Wall clock time and date at job start Mon Mar 30 2020 03:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47094 * 2 1 4 4 H 1.08994 * 109.46991 * 180.83529 * 3 2 1 5 5 C 1.50697 * 109.47341 * 60.83354 * 3 2 1 6 6 H 1.07993 * 120.00325 * 240.00029 * 5 3 2 7 7 C 1.37875 * 119.99856 * 60.00040 * 5 3 2 8 8 N 1.31522 * 120.00106 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00140 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46930 * 60.00195 * 9 7 5 11 11 H 1.48499 * 109.47139 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47128 * 299.99998 * 9 7 5 13 13 N 1.46898 * 109.46927 * 300.83332 * 3 2 1 14 14 C 1.46899 * 110.99943 * 174.14581 * 13 3 2 15 15 C 1.46900 * 111.00401 * 298.09734 * 13 3 2 16 16 C 1.52998 * 109.47120 * 166.47266 * 15 13 3 17 17 H 1.08998 * 109.46887 * 60.01155 * 16 15 13 18 18 O 1.42894 * 109.47561 * 300.00425 * 16 15 13 19 19 C 1.53000 * 109.46929 * 180.02562 * 16 15 13 20 20 C 1.53006 * 117.49946 * 248.75180 * 19 16 15 21 21 C 1.53001 * 117.49761 * 180.09041 * 19 16 15 22 22 H 1.09005 * 109.47162 * 174.83574 * 1 2 3 23 23 H 1.09002 * 109.47478 * 54.83379 * 1 2 3 24 24 H 1.09001 * 109.47255 * 294.83950 * 1 2 3 25 25 H 1.09003 * 109.46662 * 119.99862 * 2 1 3 26 26 H 1.08995 * 109.47168 * 239.99524 * 2 1 3 27 27 H 0.96997 * 119.99841 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47351 * 60.00362 * 14 13 3 29 29 H 1.09006 * 109.47500 * 180.02562 * 14 13 3 30 30 H 1.09005 * 109.47402 * 300.00159 * 14 13 3 31 31 H 1.08997 * 109.47216 * 286.48039 * 15 13 3 32 32 H 1.09007 * 109.46366 * 46.48185 * 15 13 3 33 33 H 0.96698 * 114.00170 * 300.00167 * 18 16 15 34 34 H 1.09003 * 115.55041 * 34.41920 * 19 16 15 35 35 H 1.09004 * 117.49620 * 359.97438 * 20 19 16 36 36 H 1.08992 * 117.50181 * 145.01935 * 20 19 16 37 37 H 1.08998 * 117.49992 * 214.97433 * 21 19 16 38 38 H 1.08999 * 117.49926 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 -0.0150 5 6 1.5546 2.1469 1.2406 6 1 0.9325 3.0254 1.1544 7 6 1.9049 1.6698 2.4859 8 7 2.6630 0.6002 2.5910 9 14 1.3039 2.5434 4.0238 10 1 -0.1811 2.5439 4.0444 11 1 1.8149 1.8371 5.2259 12 1 1.7994 3.9433 4.0235 13 7 1.5339 2.1407 -1.1892 14 6 1.8878 3.5660 -1.1533 15 6 2.0249 1.5074 -2.4204 16 6 1.2277 2.0316 -3.6165 17 1 1.3510 3.1121 -3.6898 18 8 -0.1558 1.7208 -3.4400 19 6 1.7387 1.3714 -4.8987 20 6 2.4825 2.2565 -5.9009 21 6 1.0658 1.7684 -6.2142 22 1 -0.3634 -1.0235 -0.0925 23 1 -0.3634 0.5919 -0.8401 24 1 -0.3634 0.4317 0.9326 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 2.9090 0.2644 3.4671 28 1 2.9723 3.6704 -1.1218 29 1 1.5007 4.0592 -2.0450 30 1 1.4526 4.0262 -0.2661 31 1 3.0802 1.7444 -2.5550 32 1 1.9016 0.4268 -2.3471 33 1 -0.3402 0.7743 -3.3670 34 1 2.0716 0.3387 -4.7953 35 1 2.6074 3.3091 -5.6470 36 1 3.3044 1.8059 -6.4571 37 1 0.9564 0.9970 -6.9764 38 1 0.2588 2.4995 -6.1661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690147818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:40 Heat of formation + Delta-G solvation = -42.909573 kcal Electronic energy + Delta-G solvation = -16771.868133 eV Core-core repulsion = 14228.438227 eV Total energy + Delta-G solvation = -2543.429905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97366 -38.26505 -36.16225 -34.78694 -32.85873 -30.32379 -28.05179 -27.00690 -24.70694 -23.27432 -23.03922 -21.67255 -20.65617 -18.14512 -17.41379 -17.20304 -16.70130 -16.10100 -15.81328 -15.22754 -14.98963 -14.77161 -14.17494 -13.80152 -13.60808 -13.55109 -12.88229 -12.78427 -12.60620 -12.48028 -12.36920 -12.18058 -11.91274 -11.79124 -11.53825 -11.36947 -11.25982 -11.02734 -10.78744 -10.53699 -10.43853 -8.80721 -8.07188 -6.16734 1.42519 1.43937 1.51020 2.43797 2.83820 3.20267 3.29431 3.74295 3.85487 4.01661 4.13274 4.26078 4.38887 4.54444 4.58953 4.65172 4.78172 4.80451 4.81202 4.85050 4.96733 5.04422 5.07938 5.17100 5.28042 5.32656 5.36444 5.46010 5.56234 5.75568 5.81345 5.92973 6.32991 6.43422 6.78681 6.96059 7.02544 7.50927 8.98246 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046149 B = 0.006643 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.578360 B = 4214.248701 C = 4353.532038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C 0.221 3.779 4 H -0.048 1.048 5 C -0.507 4.507 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.526 5.526 14 C 0.041 3.959 15 C 0.024 3.976 16 C 0.155 3.845 17 H 0.085 0.915 18 O -0.558 6.558 19 C -0.201 4.201 20 C -0.173 4.173 21 C -0.157 4.157 22 H 0.038 0.962 23 H 0.061 0.939 24 H 0.026 0.974 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.259 0.741 28 H 0.002 0.998 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.380 0.620 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 0.776 -14.044 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.143 4.143 3 C 0.114 3.886 4 H -0.030 1.030 5 C -0.545 4.545 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.250 5.250 14 C -0.107 4.107 15 C -0.104 4.104 16 C 0.096 3.904 17 H 0.103 0.897 18 O -0.364 6.364 19 C -0.220 4.220 20 C -0.210 4.210 21 C -0.194 4.194 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.021 0.979 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.228 0.772 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.348 1.281 -13.919 14.174 hybrid contribution 1.143 -0.245 1.283 1.735 sum -1.205 1.037 -12.636 12.736 Atomic orbital electron populations 1.21321 0.95540 0.98675 1.01016 1.21423 0.96598 0.97171 0.99102 1.19061 0.89915 0.92113 0.87467 1.03023 1.21299 1.30614 1.11766 0.90827 0.92567 1.25611 0.95443 0.95749 1.01643 1.70008 1.37789 1.23958 1.24258 0.85710 0.78762 0.78667 0.79096 1.19796 1.21136 1.19907 1.61974 1.59278 1.02131 1.01599 1.22199 0.96759 0.90192 1.01587 1.22859 0.96256 0.99995 0.91308 1.21265 0.81024 0.98368 0.89767 0.89739 1.86530 1.24064 1.30240 1.95533 1.23005 1.06798 1.00722 0.91446 1.23042 0.95978 0.99731 1.02203 1.22875 0.95641 1.03714 0.97205 0.94300 0.92028 0.95476 0.92263 0.95181 0.93148 0.97902 0.91268 0.92371 0.95940 0.90718 0.77236 0.87330 0.88858 0.87473 0.87412 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.49 71.98 0.68 -3.98 16 2 C -0.10 -4.98 5.20 30.59 0.16 -4.82 16 3 C 0.22 11.21 1.76 44.17 0.08 11.29 16 4 H -0.05 -2.76 8.14 -2.39 -0.02 -2.77 16 5 C -0.51 -27.75 6.80 25.60 0.17 -27.57 16 6 H 0.06 3.09 6.26 -2.91 -0.02 3.08 16 7 C 0.01 0.77 5.30 84.65 0.45 1.22 16 8 N -0.92 -53.16 11.31 21.45 0.24 -52.92 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.53 -22.25 3.57 -901.48 -3.22 -25.47 16 14 C 0.04 1.65 9.04 127.69 1.15 2.80 16 15 C 0.02 0.85 4.47 86.30 0.39 1.23 16 16 C 0.16 4.42 3.11 30.59 0.10 4.51 16 17 H 0.08 2.50 6.36 -2.39 -0.02 2.49 16 18 O -0.56 -16.81 13.11 -148.98 -1.95 -18.76 16 19 C -0.20 -4.49 5.36 -10.79 -0.06 -4.55 16 20 C -0.17 -3.29 10.18 30.62 0.31 -2.98 16 21 C -0.16 -2.98 10.16 30.62 0.31 -2.67 16 22 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.06 2.52 7.42 -2.39 -0.02 2.50 16 24 H 0.03 1.28 7.43 -2.39 -0.02 1.26 16 25 H 0.06 3.21 6.05 -2.39 -0.01 3.20 16 26 H 0.03 1.29 6.22 -2.39 -0.01 1.27 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.07 2.37 6.45 -2.38 -0.02 2.35 16 30 H 0.06 2.52 6.13 -2.38 -0.01 2.50 16 31 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.07 2.59 5.80 -2.38 -0.01 2.58 16 33 H 0.38 9.50 9.04 -74.06 -0.67 8.83 16 34 H 0.11 2.33 8.11 -2.39 -0.02 2.31 16 35 H 0.09 1.79 8.05 -2.39 -0.02 1.77 16 36 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -60.95 298.30 1.20 -59.75 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.36 Total: 16.77 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.74 Total: -25.51 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.98 Total: -78.39 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.95 Total: -18.76 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -60.95 1.20 -59.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690147818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.843 kcal (2) G-P(sol) polarization free energy of solvation -60.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds