Wall clock time and date at job start Mon Mar 30 2020 03:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 H 1.08996 * 109.46708 * 178.05248 * 3 2 1 5 5 C 1.50694 * 109.47169 * 298.05194 * 3 2 1 6 6 H 1.08003 * 120.00673 * 119.99974 * 5 3 2 7 7 C 1.37883 * 120.00357 * 300.00138 * 5 3 2 8 8 N 1.31512 * 120.00247 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99499 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46770 * 90.00164 * 9 7 5 11 11 H 1.48498 * 109.47300 * 209.99766 * 9 7 5 12 12 H 1.48496 * 109.47414 * 330.00666 * 9 7 5 13 13 N 1.46905 * 109.47067 * 58.05127 * 3 2 1 14 14 C 1.46897 * 110.99600 * 184.86780 * 13 3 2 15 15 C 1.46898 * 110.99746 * 60.91925 * 13 3 2 16 16 C 1.53002 * 109.46876 * 195.61566 * 15 13 3 17 17 H 1.09002 * 109.47315 * 54.15767 * 16 15 13 18 18 O 1.42901 * 109.46866 * 294.16092 * 16 15 13 19 19 C 1.52993 * 109.47087 * 174.16061 * 16 15 13 20 20 C 1.53000 * 117.49916 * 248.74183 * 19 16 15 21 21 C 1.53007 * 117.49688 * 180.08391 * 19 16 15 22 22 H 1.08998 * 109.47411 * 305.18668 * 1 2 3 23 23 H 1.09004 * 109.46602 * 65.18820 * 1 2 3 24 24 H 1.09000 * 109.47033 * 185.18057 * 1 2 3 25 25 H 1.08996 * 109.47365 * 239.99879 * 2 1 3 26 26 H 1.09000 * 109.46702 * 119.99657 * 2 1 3 27 27 H 0.96999 * 119.99918 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.47347 * 53.77816 * 14 13 3 29 29 H 1.08999 * 109.46971 * 173.77359 * 14 13 3 30 30 H 1.08994 * 109.47893 * 293.77515 * 14 13 3 31 31 H 1.09004 * 109.47293 * 315.60977 * 15 13 3 32 32 H 1.08995 * 109.47568 * 75.61505 * 15 13 3 33 33 H 0.96702 * 114.00232 * 299.99794 * 18 16 15 34 34 H 1.09000 * 115.55175 * 34.42011 * 19 16 15 35 35 H 1.08997 * 117.49971 * 0.02562 * 20 19 16 36 36 H 1.09004 * 117.49659 * 145.01801 * 20 19 16 37 37 H 1.09006 * 117.49636 * 214.98114 * 21 19 16 38 38 H 1.08995 * 117.49891 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0349 5 6 1.5775 2.1388 -1.2538 6 1 0.9539 3.0179 -1.1848 7 6 1.9504 1.6537 -2.4895 8 7 1.5464 2.2611 -3.5837 9 14 3.0296 0.1337 -2.6091 10 1 2.1731 -1.0780 -2.6680 11 1 3.8611 0.2123 -3.8370 12 1 3.9124 0.0583 -1.4174 13 7 1.5122 2.1485 1.1752 14 6 1.8867 3.5687 1.1482 15 6 1.9616 1.5091 2.4191 16 6 1.1058 2.0061 3.5860 17 1 0.0520 1.8463 3.3576 18 8 1.3428 3.4004 3.7905 19 6 1.4755 1.2345 4.8543 20 6 0.4350 0.2662 5.4206 21 6 0.7236 1.5864 6.1396 22 1 -0.3634 0.5922 0.8399 23 1 -0.3633 0.4313 -0.9329 24 1 -0.3633 -1.0235 0.0928 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8091 1.9200 -4.4529 28 1 1.5777 4.0080 0.1997 29 1 1.3928 4.0903 1.9681 30 1 2.9672 3.6618 1.2569 31 1 1.8602 0.4276 2.3290 32 1 3.0061 1.7622 2.6010 33 1 2.2620 3.6168 3.9984 34 1 2.5251 0.9553 4.9457 35 1 -0.5127 0.1785 4.8894 36 1 0.8002 -0.6500 5.8848 37 1 1.2786 1.5383 7.0766 38 1 -0.0340 2.3678 6.0816 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690147821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:42 Heat of formation + Delta-G solvation = -14.257275 kcal Electronic energy + Delta-G solvation = -16838.628330 eV Core-core repulsion = 14296.440881 eV Total energy + Delta-G solvation = -2542.187449 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.88876 -36.97412 -35.26550 -32.75057 -31.44565 -29.23002 -26.63906 -25.06804 -22.74815 -22.40259 -22.00941 -20.72485 -19.03220 -16.55350 -16.37866 -15.86142 -15.24232 -15.10420 -14.29717 -13.72593 -13.58177 -13.13674 -12.97497 -12.63800 -12.20951 -12.00924 -11.58790 -11.31981 -11.10033 -10.92471 -10.79883 -10.69334 -10.55252 -10.45518 -10.17742 -10.07801 -9.97175 -9.38579 -9.20990 -8.81802 -8.51521 -7.25917 -6.04529 -4.01593 3.27022 3.36502 3.38379 3.68577 4.41186 4.43289 4.66387 4.88478 5.03879 5.08043 5.27693 5.29401 5.57988 5.60059 5.68440 5.81230 5.95471 6.04010 6.07577 6.13569 6.16532 6.31234 6.39340 6.50605 6.56730 6.72320 6.92181 7.07619 7.09295 7.20493 7.44482 7.64347 7.85073 8.00725 8.17227 8.69550 9.02977 9.57936 11.08164 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040146 B = 0.007448 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.292634 B = 3758.407724 C = 4077.979818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.182 3.818 4 H -0.007 1.007 5 C -0.497 4.497 6 H 0.084 0.916 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.271 1.271 13 N -0.517 5.517 14 C 0.022 3.978 15 C 0.020 3.980 16 C 0.144 3.856 17 H 0.104 0.896 18 O -0.551 6.551 19 C -0.191 4.191 20 C -0.173 4.173 21 C -0.168 4.168 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.021 0.979 25 H 0.045 0.955 26 H 0.032 0.968 27 H 0.263 0.737 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.002 0.998 31 H 0.080 0.920 32 H 0.023 0.977 33 H 0.367 0.633 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -3.111 15.821 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.075 3.925 4 H 0.011 0.989 5 C -0.536 4.536 6 H 0.102 0.898 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.241 5.241 14 C -0.126 4.126 15 C -0.109 4.109 16 C 0.085 3.915 17 H 0.122 0.878 18 O -0.356 6.356 19 C -0.210 4.210 20 C -0.211 4.211 21 C -0.205 4.205 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.040 0.960 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.020 0.980 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.213 0.787 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.450 -3.102 15.458 15.773 hybrid contribution 2.254 -1.099 -0.132 2.511 sum 1.804 -4.202 15.327 15.994 Atomic orbital electron populations 1.21464 0.95275 0.98072 1.03386 1.21900 0.97651 0.98194 0.98117 1.19738 0.92295 0.90743 0.89721 0.98916 1.20942 1.31729 1.13197 0.87689 0.89811 1.24895 0.95691 0.96721 0.95770 1.69877 1.45767 1.40571 0.97630 0.86946 0.80912 0.84109 0.76787 1.20458 1.22543 1.19604 1.61871 1.59261 1.02533 1.00415 1.22627 0.96656 0.89574 1.03717 1.22828 0.95676 1.00421 0.91968 1.21539 1.00607 0.79725 0.89634 0.87830 1.86602 1.32439 1.24041 1.92495 1.23103 0.97862 1.04055 0.95948 1.22939 1.00331 0.93781 1.04003 1.22834 1.03525 0.98996 0.95187 0.92255 0.91639 0.96002 0.93698 0.94909 0.92701 0.90396 0.90373 0.97984 0.90142 0.95918 0.78666 0.88090 0.88466 0.88990 0.89215 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.50 37.16 0.35 -2.24 16 2 C -0.12 -2.66 4.85 -26.73 -0.13 -2.79 16 3 C 0.18 4.33 1.35 -68.86 -0.09 4.23 16 4 H -0.01 -0.17 7.20 -51.93 -0.37 -0.54 16 5 C -0.50 -13.76 7.36 -34.44 -0.25 -14.01 16 6 H 0.08 2.53 6.60 -52.48 -0.35 2.19 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 8 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 9 Si 0.88 22.11 24.39 -169.99 -4.15 17.96 16 10 H -0.28 -6.80 6.85 56.52 0.39 -6.41 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 13 N -0.52 -10.60 3.64 -236.29 -0.86 -11.46 16 14 C 0.02 0.44 8.84 60.06 0.53 0.97 16 15 C 0.02 0.33 4.63 -3.82 -0.02 0.32 16 16 C 0.14 2.02 3.36 -26.73 -0.09 1.93 16 17 H 0.10 1.60 7.90 -51.93 -0.41 1.19 16 18 O -0.55 -7.72 10.17 -35.23 -0.36 -8.08 16 19 C -0.19 -2.18 5.36 -90.62 -0.49 -2.67 16 20 C -0.17 -1.80 10.18 -26.69 -0.27 -2.07 16 21 C -0.17 -1.72 10.16 -26.69 -0.27 -1.99 16 22 H 0.06 1.19 7.39 -51.93 -0.38 0.81 16 23 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 1.05 3.24 -51.93 -0.17 0.88 16 26 H 0.03 0.64 6.22 -51.93 -0.32 0.31 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.08 1.76 5.98 -51.93 -0.31 1.45 16 29 H 0.08 1.41 5.43 -51.93 -0.28 1.13 16 30 H 0.00 0.03 8.07 -51.93 -0.42 -0.39 16 31 H 0.08 1.34 5.71 -51.93 -0.30 1.05 16 32 H 0.02 0.37 8.01 -51.93 -0.42 -0.05 16 33 H 0.37 4.07 9.05 45.56 0.41 4.48 16 34 H 0.10 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 288.96 15.07 4.35 4.35 Total: -1.00 -29.91 288.96 -6.48 -36.39 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.42 Total: 3.83 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.83 Total: -16.40 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.09 Total: -38.06 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.36 Total: -8.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.15 Total: 17.96 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.91 -6.48 -36.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690147821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.131 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds