Wall clock time and date at job start Mon Mar 30 2020 03:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 H 1.08996 * 109.46708 * 178.05248 * 3 2 1 5 5 C 1.50694 * 109.47169 * 298.05194 * 3 2 1 6 6 H 1.08003 * 120.00673 * 119.99974 * 5 3 2 7 7 C 1.37883 * 120.00357 * 300.00138 * 5 3 2 8 8 N 1.31512 * 120.00247 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99499 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46770 * 90.00164 * 9 7 5 11 11 H 1.48498 * 109.47300 * 209.99766 * 9 7 5 12 12 H 1.48496 * 109.47414 * 330.00666 * 9 7 5 13 13 N 1.46905 * 109.47067 * 58.05127 * 3 2 1 14 14 C 1.46897 * 110.99600 * 184.86780 * 13 3 2 15 15 C 1.46898 * 110.99746 * 60.91925 * 13 3 2 16 16 C 1.53002 * 109.46876 * 195.61566 * 15 13 3 17 17 H 1.09002 * 109.47315 * 54.15767 * 16 15 13 18 18 O 1.42901 * 109.46866 * 294.16092 * 16 15 13 19 19 C 1.52993 * 109.47087 * 174.16061 * 16 15 13 20 20 C 1.53000 * 117.49916 * 248.74183 * 19 16 15 21 21 C 1.53007 * 117.49688 * 180.08391 * 19 16 15 22 22 H 1.08998 * 109.47411 * 305.18668 * 1 2 3 23 23 H 1.09004 * 109.46602 * 65.18820 * 1 2 3 24 24 H 1.09000 * 109.47033 * 185.18057 * 1 2 3 25 25 H 1.08996 * 109.47365 * 239.99879 * 2 1 3 26 26 H 1.09000 * 109.46702 * 119.99657 * 2 1 3 27 27 H 0.96999 * 119.99918 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.47347 * 53.77816 * 14 13 3 29 29 H 1.08999 * 109.46971 * 173.77359 * 14 13 3 30 30 H 1.08994 * 109.47893 * 293.77515 * 14 13 3 31 31 H 1.09004 * 109.47293 * 315.60977 * 15 13 3 32 32 H 1.08995 * 109.47568 * 75.61505 * 15 13 3 33 33 H 0.96702 * 114.00232 * 299.99794 * 18 16 15 34 34 H 1.09000 * 115.55175 * 34.42011 * 19 16 15 35 35 H 1.08997 * 117.49971 * 0.02562 * 20 19 16 36 36 H 1.09004 * 117.49659 * 145.01801 * 20 19 16 37 37 H 1.09006 * 117.49636 * 214.98114 * 21 19 16 38 38 H 1.08995 * 117.49891 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0349 5 6 1.5775 2.1388 -1.2538 6 1 0.9539 3.0179 -1.1848 7 6 1.9504 1.6537 -2.4895 8 7 1.5464 2.2611 -3.5837 9 14 3.0296 0.1337 -2.6091 10 1 2.1731 -1.0780 -2.6680 11 1 3.8611 0.2123 -3.8370 12 1 3.9124 0.0583 -1.4174 13 7 1.5122 2.1485 1.1752 14 6 1.8867 3.5687 1.1482 15 6 1.9616 1.5091 2.4191 16 6 1.1058 2.0061 3.5860 17 1 0.0520 1.8463 3.3576 18 8 1.3428 3.4004 3.7905 19 6 1.4755 1.2345 4.8543 20 6 0.4350 0.2662 5.4206 21 6 0.7236 1.5864 6.1396 22 1 -0.3634 0.5922 0.8399 23 1 -0.3633 0.4313 -0.9329 24 1 -0.3633 -1.0235 0.0928 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8091 1.9200 -4.4529 28 1 1.5777 4.0080 0.1997 29 1 1.3928 4.0903 1.9681 30 1 2.9672 3.6618 1.2569 31 1 1.8602 0.4276 2.3290 32 1 3.0061 1.7622 2.6010 33 1 2.2620 3.6168 3.9984 34 1 2.5251 0.9553 4.9457 35 1 -0.5127 0.1785 4.8894 36 1 0.8002 -0.6500 5.8848 37 1 1.2786 1.5383 7.0766 38 1 -0.0340 2.3678 6.0816 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690147821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:41 Heat of formation + Delta-G solvation = -35.786289 kcal Electronic energy + Delta-G solvation = -16839.561898 eV Core-core repulsion = 14296.440881 eV Total energy + Delta-G solvation = -2543.121017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12521 -38.38963 -36.34303 -34.64683 -33.33217 -30.62710 -28.48933 -26.68416 -24.44241 -23.58582 -23.12637 -21.71969 -20.81036 -18.49759 -17.55805 -17.37299 -16.59172 -16.36741 -16.02315 -15.30616 -14.85780 -14.73636 -14.63561 -14.22633 -13.76243 -13.53306 -12.94632 -12.75676 -12.57418 -12.50239 -12.41352 -12.31330 -11.99750 -11.91015 -11.71418 -11.31357 -11.26829 -11.03555 -10.85337 -10.66778 -10.41502 -8.90428 -8.25977 -6.26791 1.28168 1.32297 1.41801 2.31639 2.84088 3.07584 3.19369 3.68829 3.84320 4.03320 4.16353 4.20579 4.34589 4.35983 4.45070 4.54786 4.58698 4.66401 4.80591 4.84418 4.97931 5.01039 5.04462 5.09920 5.21360 5.31296 5.31825 5.33995 5.38258 5.45012 5.65328 5.76065 6.07439 6.43375 6.75218 6.79911 6.91161 7.36730 8.90430 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040146 B = 0.007448 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.292634 B = 3758.407724 C = 4077.979818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.122 4.122 3 C 0.186 3.814 4 H -0.019 1.019 5 C -0.492 4.492 6 H 0.042 0.958 7 C 0.014 3.986 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.265 1.265 11 H -0.300 1.300 12 H -0.254 1.254 13 N -0.528 5.528 14 C 0.032 3.968 15 C 0.022 3.978 16 C 0.154 3.846 17 H 0.087 0.913 18 O -0.564 6.564 19 C -0.195 4.195 20 C -0.171 4.171 21 C -0.161 4.161 22 H 0.063 0.937 23 H 0.028 0.972 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.264 0.736 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.007 0.993 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.381 0.619 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 -5.034 18.395 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.159 4.159 3 C 0.078 3.922 4 H -0.001 1.001 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.183 4.183 8 N -0.590 5.590 9 Si 0.769 3.231 10 H -0.191 1.191 11 H -0.228 1.228 12 H -0.179 1.179 13 N -0.251 5.251 14 C -0.116 4.116 15 C -0.106 4.106 16 C 0.095 3.905 17 H 0.105 0.895 18 O -0.370 6.370 19 C -0.214 4.214 20 C -0.208 4.208 21 C -0.198 4.198 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.026 0.974 31 H 0.103 0.897 32 H 0.050 0.950 33 H 0.230 0.770 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.404 -5.025 18.069 18.759 hybrid contribution 1.936 -0.385 -0.867 2.156 sum 2.340 -5.410 17.202 18.183 Atomic orbital electron populations 1.21366 0.94648 0.99804 1.01583 1.21868 0.98210 0.96690 0.99148 1.19571 0.91415 0.91968 0.89283 1.00147 1.21137 1.30200 1.11913 0.89815 0.94009 1.25685 0.97297 0.99930 0.95365 1.70029 1.47940 1.42732 0.98297 0.85965 0.79394 0.80645 0.77091 1.19064 1.22796 1.17870 1.61817 1.59602 1.02582 1.01132 1.22521 0.97086 0.89628 1.02401 1.22936 0.96673 1.00379 0.90656 1.21320 0.99106 0.80068 0.90030 0.89474 1.86553 1.33843 1.24168 1.92475 1.22945 0.98726 1.04694 0.95056 1.23037 0.99733 0.94448 1.03627 1.22875 1.02984 0.98656 0.95269 0.91819 0.95271 0.92853 0.94849 0.91465 0.92716 0.94219 0.88302 0.97415 0.89657 0.94983 0.77043 0.86968 0.88942 0.87384 0.87467 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.67 9.50 71.98 0.68 -3.99 16 2 C -0.12 -5.07 4.85 30.60 0.15 -4.92 16 3 C 0.19 8.68 1.35 44.17 0.06 8.74 16 4 H -0.02 -0.92 7.20 -2.39 -0.02 -0.94 16 5 C -0.49 -28.04 7.36 25.60 0.19 -27.85 16 6 H 0.04 2.68 6.60 -2.91 -0.02 2.66 16 7 C 0.01 0.82 5.45 84.66 0.46 1.28 16 8 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 9 Si 0.94 45.47 24.39 68.60 1.67 47.15 16 10 H -0.26 -12.15 6.85 99.48 0.68 -11.47 16 11 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 12 H -0.25 -11.52 6.53 99.48 0.65 -10.87 16 13 N -0.53 -21.19 3.64 -901.48 -3.28 -24.47 16 14 C 0.03 1.26 8.84 127.69 1.13 2.39 16 15 C 0.02 0.67 4.63 86.30 0.40 1.07 16 16 C 0.15 3.96 3.36 30.59 0.10 4.06 16 17 H 0.09 2.55 7.90 -2.39 -0.02 2.53 16 18 O -0.56 -14.59 10.17 -148.98 -1.51 -16.11 16 19 C -0.20 -3.82 5.36 -10.79 -0.06 -3.88 16 20 C -0.17 -3.00 10.18 30.62 0.31 -2.69 16 21 C -0.16 -2.77 10.16 30.62 0.31 -2.46 16 22 H 0.06 2.46 7.39 -2.39 -0.02 2.44 16 23 H 0.03 1.35 7.46 -2.38 -0.02 1.33 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.03 1.47 3.24 -2.39 -0.01 1.47 16 26 H 0.07 2.35 6.22 -2.39 -0.01 2.34 16 27 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.04 1.86 5.98 -2.39 -0.01 1.85 16 29 H 0.10 3.50 5.43 -2.39 -0.01 3.49 16 30 H 0.01 0.28 8.07 -2.39 -0.02 0.26 16 31 H 0.09 2.54 5.71 -2.38 -0.01 2.52 16 32 H 0.03 0.94 8.01 -2.39 -0.02 0.92 16 33 H 0.38 7.45 9.05 -74.06 -0.67 6.78 16 34 H 0.11 1.99 8.11 -2.39 -0.02 1.97 16 35 H 0.09 1.71 8.05 -2.39 -0.02 1.69 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -65.86 288.96 1.20 -64.66 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.29 Total: 16.52 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.74 Total: -28.25 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.98 Total: -83.98 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.51 Total: -16.11 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.15 kcal Total: -65.86 1.20 -64.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690147821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.877 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds