Wall clock time and date at job start Mon Mar 30 2020 03:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47391 * 2 1 4 4 H 1.09001 * 109.47464 * 181.64974 * 3 2 1 5 5 C 1.50707 * 109.47055 * 61.65108 * 3 2 1 6 6 H 1.07995 * 120.00028 * 239.72672 * 5 3 2 7 7 C 1.37884 * 119.99589 * 60.00303 * 5 3 2 8 8 N 1.31516 * 120.00185 * 359.72168 * 7 5 3 9 9 Si 1.86796 * 119.99636 * 179.72838 * 7 5 3 10 10 H 1.48496 * 109.47634 * 59.99637 * 9 7 5 11 11 H 1.48502 * 109.47008 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47099 * 299.99398 * 9 7 5 13 13 N 1.46897 * 109.47445 * 301.65228 * 3 2 1 14 14 C 1.46894 * 110.99937 * 302.05327 * 13 3 2 15 15 C 1.53003 * 109.47133 * 302.94340 * 14 13 3 16 16 H 1.09000 * 109.47337 * 54.83930 * 15 14 13 17 17 C 1.53000 * 109.47160 * 174.83953 * 15 14 13 18 18 O 1.42896 * 109.46891 * 294.83872 * 15 14 13 19 19 C 1.46894 * 111.00195 * 178.09499 * 13 3 2 20 20 C 1.52998 * 117.50274 * 252.35838 * 19 13 3 21 21 C 1.53007 * 117.49832 * 183.69785 * 19 13 3 22 22 H 1.09001 * 109.46824 * 63.62134 * 1 2 3 23 23 H 1.09000 * 109.47597 * 183.61960 * 1 2 3 24 24 H 1.08998 * 109.47370 * 303.62014 * 1 2 3 25 25 H 1.09003 * 109.47106 * 239.99758 * 2 1 3 26 26 H 1.09008 * 109.47377 * 120.00277 * 2 1 3 27 27 H 0.97001 * 119.99891 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47416 * 62.93907 * 14 13 3 29 29 H 1.09000 * 109.47486 * 182.94446 * 14 13 3 30 30 H 1.08998 * 109.47528 * 59.99819 * 17 15 14 31 31 H 1.09002 * 109.47138 * 180.02562 * 17 15 14 32 32 H 1.09006 * 109.47150 * 299.99832 * 17 15 14 33 33 H 0.96700 * 113.99769 * 299.99432 * 18 15 14 34 34 H 1.09007 * 115.54901 * 38.03710 * 19 13 3 35 35 H 1.08996 * 117.49640 * 0.02562 * 20 19 13 36 36 H 1.09005 * 117.49955 * 145.02035 * 20 19 13 37 37 H 1.08997 * 117.50032 * 214.97885 * 21 19 13 38 38 H 1.08992 * 117.49794 * 0.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1296 1.4426 -0.0296 5 6 1.5713 2.1410 1.2505 6 1 0.9518 3.0224 1.1767 7 6 1.9384 1.6579 2.4887 8 7 2.6928 0.5844 2.5785 9 14 1.3638 2.5281 4.0385 10 1 -0.1205 2.5344 4.0814 11 1 1.8899 1.8153 5.2303 12 1 1.8649 3.9260 4.0359 13 7 1.5181 2.1464 -1.1789 14 6 1.9150 1.4644 -2.4179 15 6 3.4401 1.3549 -2.4736 16 1 3.8025 0.8650 -1.5699 17 6 3.8480 0.5329 -3.6979 18 8 4.0084 2.6627 -2.5670 19 6 1.9513 3.5500 -1.1885 20 6 0.8986 4.6165 -0.8796 21 6 1.4192 4.4459 -2.3090 22 1 -0.3633 0.4566 -0.9207 23 1 -0.3634 -1.0256 0.0649 24 1 -0.3634 0.5690 0.8557 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9507 0.2443 3.4496 28 1 1.4782 0.4660 -2.4391 29 1 1.5601 2.0346 -3.2763 30 1 3.4857 1.0228 -4.6016 31 1 4.9345 0.4546 -3.7373 32 1 3.4145 -0.4647 -3.6266 33 1 3.7291 3.1579 -3.3493 34 1 2.9681 3.7306 -0.8398 35 1 -0.1153 4.2765 -0.6688 36 1 1.2229 5.4988 -0.3278 37 1 2.0858 5.2161 -2.6969 38 1 0.7475 3.9939 -3.0386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691373900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:42 Heat of formation + Delta-G solvation = -24.022529 kcal Electronic energy + Delta-G solvation = -17379.529545 eV Core-core repulsion = 14836.918643 eV Total energy + Delta-G solvation = -2542.610902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83746 -36.09750 -34.80543 -32.34931 -30.78396 -29.83296 -26.87424 -24.38995 -23.37459 -21.88283 -21.27796 -19.96133 -18.64183 -16.61187 -15.83780 -15.29655 -14.88607 -14.58345 -14.31814 -13.65438 -13.37170 -13.10541 -12.51260 -12.03617 -11.94229 -11.81238 -11.40955 -11.07325 -10.85309 -10.77374 -10.70351 -10.51649 -10.29636 -10.25946 -9.93828 -9.73257 -9.58527 -9.32403 -9.09164 -8.71700 -8.30267 -6.96629 -5.92780 -3.94110 3.36846 3.40983 3.44209 4.46972 4.61736 4.78995 4.90004 5.25254 5.39194 5.49092 5.59711 5.73654 5.79328 5.81415 5.98343 6.14973 6.15633 6.26542 6.39247 6.49680 6.52340 6.57666 6.62480 6.79829 6.80558 6.94221 7.12252 7.31231 7.50200 7.72314 7.77529 7.93848 8.05293 8.27342 8.41832 8.68569 9.12019 9.68974 11.14064 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025481 B = 0.010542 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.607800 B = 2655.512116 C = 3076.452427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.217 3.783 4 H 0.006 0.994 5 C -0.489 4.489 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.500 5.500 14 C 0.027 3.973 15 C 0.061 3.939 16 H 0.107 0.893 17 C -0.179 4.179 18 O -0.554 6.554 19 C 0.064 3.936 20 C -0.168 4.168 21 C -0.200 4.200 22 H 0.039 0.961 23 H 0.014 0.986 24 H 0.059 0.941 25 H 0.011 0.989 26 H 0.093 0.907 27 H 0.259 0.741 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.362 0.638 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 1.951 -10.175 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.023 0.977 5 C -0.528 4.528 6 H 0.083 0.917 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.223 5.223 14 C -0.102 4.102 15 C 0.000 4.000 16 H 0.125 0.875 17 C -0.238 4.238 18 O -0.358 6.358 19 C -0.045 4.045 20 C -0.206 4.206 21 C -0.238 4.238 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.078 0.922 25 H 0.030 0.970 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.208 0.792 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.789 1.630 -9.417 9.590 hybrid contribution 0.298 0.477 0.320 0.648 sum -0.491 2.108 -9.097 9.351 Atomic orbital electron populations 1.21468 0.97378 0.97497 1.01480 1.21611 0.95135 0.98381 1.00072 1.19312 0.92988 0.90336 0.86230 0.97673 1.21078 1.30644 1.11574 0.89471 0.91742 1.24883 0.95390 0.95158 0.98830 1.69857 1.37008 1.22657 1.24096 0.86664 0.78978 0.79666 0.82702 1.20391 1.21565 1.20466 1.62169 1.58315 0.99839 1.01996 1.22846 0.92809 1.00123 0.94409 1.22787 0.95302 0.83230 0.98632 0.87508 1.22453 1.01686 1.00980 0.98659 1.86653 1.72561 1.28115 1.48514 1.22024 0.95818 0.87138 0.99497 1.22913 1.00451 1.00722 0.96469 1.23032 1.04608 1.03640 0.92517 0.94224 0.96645 0.92198 0.96994 0.88876 0.93131 0.90373 0.92201 0.92957 0.92530 0.91872 0.79194 0.89110 0.88999 0.90085 0.90071 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.52 37.15 0.35 -2.28 16 2 C -0.11 -2.65 5.01 -26.74 -0.13 -2.79 16 3 C 0.22 5.26 1.21 -68.87 -0.08 5.17 16 4 H 0.01 0.16 6.26 -51.93 -0.32 -0.17 16 5 C -0.49 -13.06 6.83 -34.43 -0.24 -13.29 16 6 H 0.06 1.74 6.46 -52.49 -0.34 1.40 16 7 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 8 N -0.90 -25.36 11.30 55.43 0.63 -24.73 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.50 -10.26 3.94 -220.10 -0.87 -11.13 16 14 C 0.03 0.46 4.58 -3.83 -0.02 0.45 16 15 C 0.06 1.01 3.26 -26.73 -0.09 0.93 16 16 H 0.11 2.15 6.12 -51.93 -0.32 1.84 16 17 C -0.18 -2.36 9.53 37.16 0.35 -2.01 16 18 O -0.55 -9.26 10.61 -35.23 -0.37 -9.63 16 19 C 0.06 1.25 2.51 -67.71 -0.17 1.08 16 20 C -0.17 -3.04 9.43 -26.69 -0.25 -3.29 16 21 C -0.20 -3.13 9.44 -26.69 -0.25 -3.39 16 22 H 0.04 0.81 7.63 -51.93 -0.40 0.42 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 1.43 7.15 -51.93 -0.37 1.06 16 25 H 0.01 0.25 6.53 -51.93 -0.34 -0.09 16 26 H 0.09 2.46 6.02 -51.92 -0.31 2.14 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.08 1.36 6.42 -51.93 -0.33 1.02 16 29 H 0.06 0.92 6.89 -51.93 -0.36 0.56 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.36 4.72 8.80 45.56 0.40 5.12 16 34 H 0.09 2.00 7.17 -51.93 -0.37 1.63 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.27 7.49 -51.93 -0.39 0.88 16 LS Contribution 291.58 15.07 4.39 4.39 Total: -1.00 -28.01 291.58 -7.41 -35.42 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.55 Total: 7.09 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.62 Total: -17.94 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.24 Total: -35.86 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.37 Total: -9.63 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.01 -7.41 -35.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691373900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.396 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds