Wall clock time and date at job start Mon Mar 30 2020 03:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47391 * 2 1 4 4 H 1.09001 * 109.47464 * 181.64974 * 3 2 1 5 5 C 1.50707 * 109.47055 * 61.65108 * 3 2 1 6 6 H 1.07995 * 120.00028 * 239.72672 * 5 3 2 7 7 C 1.37884 * 119.99589 * 60.00303 * 5 3 2 8 8 N 1.31516 * 120.00185 * 359.72168 * 7 5 3 9 9 Si 1.86796 * 119.99636 * 179.72838 * 7 5 3 10 10 H 1.48496 * 109.47634 * 59.99637 * 9 7 5 11 11 H 1.48502 * 109.47008 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47099 * 299.99398 * 9 7 5 13 13 N 1.46897 * 109.47445 * 301.65228 * 3 2 1 14 14 C 1.46894 * 110.99937 * 302.05327 * 13 3 2 15 15 C 1.53003 * 109.47133 * 302.94340 * 14 13 3 16 16 H 1.09000 * 109.47337 * 54.83930 * 15 14 13 17 17 C 1.53000 * 109.47160 * 174.83953 * 15 14 13 18 18 O 1.42896 * 109.46891 * 294.83872 * 15 14 13 19 19 C 1.46894 * 111.00195 * 178.09499 * 13 3 2 20 20 C 1.52998 * 117.50274 * 252.35838 * 19 13 3 21 21 C 1.53007 * 117.49832 * 183.69785 * 19 13 3 22 22 H 1.09001 * 109.46824 * 63.62134 * 1 2 3 23 23 H 1.09000 * 109.47597 * 183.61960 * 1 2 3 24 24 H 1.08998 * 109.47370 * 303.62014 * 1 2 3 25 25 H 1.09003 * 109.47106 * 239.99758 * 2 1 3 26 26 H 1.09008 * 109.47377 * 120.00277 * 2 1 3 27 27 H 0.97001 * 119.99891 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47416 * 62.93907 * 14 13 3 29 29 H 1.09000 * 109.47486 * 182.94446 * 14 13 3 30 30 H 1.08998 * 109.47528 * 59.99819 * 17 15 14 31 31 H 1.09002 * 109.47138 * 180.02562 * 17 15 14 32 32 H 1.09006 * 109.47150 * 299.99832 * 17 15 14 33 33 H 0.96700 * 113.99769 * 299.99432 * 18 15 14 34 34 H 1.09007 * 115.54901 * 38.03710 * 19 13 3 35 35 H 1.08996 * 117.49640 * 0.02562 * 20 19 13 36 36 H 1.09005 * 117.49955 * 145.02035 * 20 19 13 37 37 H 1.08997 * 117.50032 * 214.97885 * 21 19 13 38 38 H 1.08992 * 117.49794 * 0.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1296 1.4426 -0.0296 5 6 1.5713 2.1410 1.2505 6 1 0.9518 3.0224 1.1767 7 6 1.9384 1.6579 2.4887 8 7 2.6928 0.5844 2.5785 9 14 1.3638 2.5281 4.0385 10 1 -0.1205 2.5344 4.0814 11 1 1.8899 1.8153 5.2303 12 1 1.8649 3.9260 4.0359 13 7 1.5181 2.1464 -1.1789 14 6 1.9150 1.4644 -2.4179 15 6 3.4401 1.3549 -2.4736 16 1 3.8025 0.8650 -1.5699 17 6 3.8480 0.5329 -3.6979 18 8 4.0084 2.6627 -2.5670 19 6 1.9513 3.5500 -1.1885 20 6 0.8986 4.6165 -0.8796 21 6 1.4192 4.4459 -2.3090 22 1 -0.3633 0.4566 -0.9207 23 1 -0.3634 -1.0256 0.0649 24 1 -0.3634 0.5690 0.8557 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9507 0.2443 3.4496 28 1 1.4782 0.4660 -2.4391 29 1 1.5601 2.0346 -3.2763 30 1 3.4857 1.0228 -4.6016 31 1 4.9345 0.4546 -3.7373 32 1 3.4145 -0.4647 -3.6266 33 1 3.7291 3.1579 -3.3493 34 1 2.9681 3.7306 -0.8398 35 1 -0.1153 4.2765 -0.6688 36 1 1.2229 5.4988 -0.3278 37 1 2.0858 5.2161 -2.6969 38 1 0.7475 3.9939 -3.0386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691373900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:42 Heat of formation + Delta-G solvation = -43.038670 kcal Electronic energy + Delta-G solvation = -17380.354146 eV Core-core repulsion = 14836.918643 eV Total energy + Delta-G solvation = -2543.435503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33562 -37.49405 -36.49871 -34.16889 -32.42639 -31.29838 -28.67876 -25.94295 -25.24844 -23.22815 -22.66823 -21.61504 -20.34950 -18.39452 -17.20336 -17.14821 -16.39270 -16.14904 -15.98020 -15.27423 -14.86813 -14.69750 -14.12009 -13.79880 -13.41102 -13.20696 -12.80617 -12.71315 -12.62021 -12.48487 -12.28324 -12.12860 -11.91055 -11.88268 -11.55898 -11.44642 -11.23388 -10.96009 -10.66943 -10.60181 -10.31222 -8.60658 -8.02417 -6.09270 1.41840 1.42345 1.49452 2.46091 3.18279 3.27552 3.36654 3.59309 4.00148 4.27513 4.30807 4.34142 4.44309 4.60147 4.64426 4.69072 4.77465 4.90341 4.90976 4.98182 5.01158 5.09148 5.19370 5.28711 5.29771 5.36025 5.48192 5.49698 5.62458 5.81929 5.87929 5.92868 6.40891 6.57749 6.85288 6.98624 7.05894 7.57345 9.02923 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025481 B = 0.010542 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.607800 B = 2655.512116 C = 3076.452427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C 0.229 3.771 4 H -0.037 1.037 5 C -0.494 4.494 6 H 0.058 0.942 7 C 0.010 3.990 8 N -0.922 5.922 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.502 5.502 14 C 0.027 3.973 15 C 0.067 3.933 16 H 0.060 0.940 17 C -0.169 4.169 18 O -0.570 6.570 19 C 0.038 3.962 20 C -0.180 4.180 21 C -0.153 4.153 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.257 0.743 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.380 0.620 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 2.705 -12.237 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.122 3.878 4 H -0.019 1.019 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.224 5.224 14 C -0.101 4.101 15 C 0.006 3.994 16 H 0.078 0.922 17 C -0.227 4.227 18 O -0.377 6.377 19 C -0.071 4.071 20 C -0.218 4.218 21 C -0.191 4.191 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.228 0.772 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.822 2.398 -11.503 11.891 hybrid contribution 0.649 0.287 0.911 1.155 sum -1.173 2.685 -10.593 10.990 Atomic orbital electron populations 1.21320 0.95844 0.98448 1.00907 1.21464 0.96306 0.97679 0.99284 1.18980 0.90442 0.91090 0.87298 1.01923 1.21341 1.29924 1.11250 0.90759 0.92412 1.25567 0.95763 0.95858 1.01527 1.70001 1.38160 1.23853 1.24340 0.85806 0.78707 0.78635 0.79640 1.19788 1.21401 1.20244 1.62070 1.57966 1.00411 1.01985 1.22944 0.93179 1.00255 0.93719 1.22527 0.94732 0.83654 0.98438 0.92156 1.22340 1.01798 1.00815 0.97757 1.86628 1.72766 1.28414 1.49914 1.21863 0.94644 0.87056 1.03510 1.22942 0.99379 1.00310 0.99150 1.23083 1.03223 1.01680 0.91080 0.92813 0.94631 0.94830 0.95188 0.92231 0.93434 0.90428 0.89192 0.90186 0.92564 0.91285 0.77166 0.92401 0.90059 0.89724 0.87451 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.52 71.98 0.69 -3.94 16 2 C -0.11 -5.16 5.01 30.59 0.15 -5.01 16 3 C 0.23 11.38 1.21 44.17 0.05 11.44 16 4 H -0.04 -2.11 6.26 -2.39 -0.01 -2.12 16 5 C -0.49 -27.06 6.83 25.60 0.17 -26.89 16 6 H 0.06 3.18 6.46 -2.91 -0.02 3.16 16 7 C 0.01 0.58 5.30 84.66 0.45 1.03 16 8 N -0.92 -54.02 11.30 21.45 0.24 -53.78 16 9 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.50 -20.32 3.94 -850.27 -3.35 -23.67 16 14 C 0.03 0.89 4.58 86.31 0.39 1.28 16 15 C 0.07 2.18 3.26 30.60 0.10 2.28 16 16 H 0.06 2.55 6.12 -2.39 -0.01 2.53 16 17 C -0.17 -4.05 9.53 71.98 0.69 -3.36 16 18 O -0.57 -18.50 10.61 -148.98 -1.58 -20.08 16 19 C 0.04 1.47 2.51 44.92 0.11 1.58 16 20 C -0.18 -6.28 9.43 30.62 0.29 -5.99 16 21 C -0.15 -4.27 9.44 30.62 0.29 -3.98 16 22 H 0.05 2.12 7.63 -2.39 -0.02 2.10 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.03 1.59 7.15 -2.39 -0.02 1.57 16 25 H 0.03 1.27 6.53 -2.39 -0.02 1.26 16 26 H 0.06 3.24 6.02 -2.38 -0.01 3.23 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.08 2.52 6.42 -2.38 -0.02 2.51 16 29 H 0.09 2.38 6.89 -2.39 -0.02 2.37 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.38 8.85 8.80 -74.06 -0.65 8.20 16 34 H 0.06 2.61 7.17 -2.38 -0.02 2.60 16 35 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.10 2.54 7.49 -2.39 -0.02 2.52 16 Total: -1.00 -62.63 291.58 1.10 -61.53 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.38 Total: 20.57 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 3.39 Total: -31.56 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -3.11 Total: -77.45 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -1.58 Total: -20.08 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.63 1.10 -61.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691373900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.488 kcal (2) G-P(sol) polarization free energy of solvation -62.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds