Wall clock time and date at job start Mon Mar 30 2020 03:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47633 * 2 1 4 4 H 1.09000 * 109.47113 * 304.18568 * 3 2 1 5 5 C 1.50693 * 109.47777 * 184.18170 * 3 2 1 6 6 H 1.08001 * 120.00123 * 240.00525 * 5 3 2 7 7 C 1.37879 * 120.00080 * 59.99986 * 5 3 2 8 8 N 1.31507 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00004 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47160 * 90.00026 * 9 7 5 11 11 H 1.48498 * 109.47000 * 209.99852 * 9 7 5 12 12 H 1.48499 * 109.47024 * 329.99909 * 9 7 5 13 13 N 1.46904 * 109.46837 * 64.17732 * 3 2 1 14 14 C 1.46896 * 111.00097 * 206.02711 * 13 3 2 15 15 H 1.09003 * 110.83180 * 327.59750 * 14 13 3 16 16 C 1.55222 * 111.02522 * 91.30860 * 14 13 3 17 17 O 1.44377 * 103.57215 * 155.07278 * 16 14 13 18 18 C 1.43747 * 106.97245 * 320.01134 * 17 16 14 19 19 C 1.54104 * 107.29322 * 26.51322 * 18 17 16 20 20 H 1.09002 * 110.48906 * 239.15939 * 19 18 17 21 21 C 1.53002 * 110.48809 * 116.64847 * 19 18 17 22 22 C 1.53000 * 109.47222 * 68.24190 * 21 19 18 23 23 H 1.09004 * 109.46996 * 54.79557 * 1 2 3 24 24 H 1.08998 * 109.46998 * 174.79726 * 1 2 3 25 25 H 1.08996 * 109.46807 * 294.79535 * 1 2 3 26 26 H 1.08999 * 109.47383 * 239.99658 * 2 1 3 27 27 H 1.09002 * 109.47278 * 120.00554 * 2 1 3 28 28 H 0.97001 * 119.99703 * 179.97438 * 8 7 5 29 29 H 1.00904 * 111.00090 * 82.07378 * 13 3 2 30 30 H 1.09004 * 110.51876 * 36.57130 * 16 14 13 31 31 H 1.09004 * 110.77797 * 273.69704 * 16 14 13 32 32 H 1.08999 * 109.88031 * 267.09141 * 18 17 16 33 33 H 1.09001 * 110.00512 * 146.00382 * 18 17 16 34 34 H 1.09005 * 109.46943 * 308.24016 * 21 19 18 35 35 H 1.08999 * 109.46816 * 188.24442 * 21 19 18 36 36 H 1.08997 * 109.46822 * 179.97438 * 22 21 19 37 37 H 1.08999 * 109.47430 * 299.99875 * 22 21 19 38 38 H 1.08996 * 109.46894 * 60.00486 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6169 1.9775 -0.8501 5 6 3.5435 1.4437 -0.1036 6 1 4.1383 1.8919 0.6785 7 6 4.1597 0.8726 -1.1968 8 7 3.4354 0.3263 -2.1489 9 14 6.0233 0.8736 -1.3249 10 1 6.5638 -0.3555 -0.6903 11 1 6.4211 0.9082 -2.7552 12 1 6.5665 2.0688 -0.6309 13 7 1.6346 2.1052 1.2467 14 6 1.5346 3.5590 1.0617 15 1 2.2645 3.9079 0.3312 16 6 0.0964 3.9700 0.6470 17 8 -0.0035 5.3421 1.0851 18 6 0.6501 5.4232 2.3628 19 6 1.7047 4.3005 2.4100 20 1 1.5073 3.6265 3.2436 21 6 3.1114 4.8916 2.5225 22 6 3.2799 5.5500 3.8933 23 1 -0.3633 0.5925 -0.8397 24 1 -0.3633 -1.0234 -0.0932 25 1 -0.3633 0.4310 0.9329 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 3.8689 -0.0752 -2.9182 29 1 2.2679 1.8791 1.9990 30 1 -0.6404 3.3495 1.1571 31 1 -0.0287 3.9021 -0.4337 32 1 -0.0782 5.2814 3.1613 33 1 1.1359 6.3928 2.4723 34 1 3.2556 5.6376 1.7409 35 1 3.8493 4.0976 2.4076 36 1 4.2822 5.9706 3.9735 37 1 2.5420 6.3440 4.0082 38 1 3.1357 4.8040 4.6748 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699469481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:23 Heat of formation + Delta-G solvation = -68.500745 kcal Electronic energy + Delta-G solvation = -16786.111002 eV Core-core repulsion = 14241.571380 eV Total energy + Delta-G solvation = -2544.539622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32663 -35.87191 -34.30614 -32.35705 -31.11196 -28.47666 -27.68684 -25.70636 -23.75416 -22.80168 -20.77207 -20.05343 -19.23632 -16.61558 -16.15672 -15.71084 -14.76150 -14.61200 -14.09606 -13.74689 -13.51973 -13.18268 -12.83156 -12.51285 -12.40651 -11.64540 -11.50563 -11.46266 -11.30424 -11.09772 -10.97999 -10.73725 -10.48058 -10.34857 -10.22960 -10.00820 -9.61147 -9.46940 -9.31464 -9.05791 -8.40821 -7.34950 -6.03046 -4.15983 3.24355 3.31962 3.33904 4.33062 4.36775 4.87710 4.91229 5.19537 5.20888 5.32163 5.44620 5.57013 5.60442 5.77795 5.88645 6.01687 6.03982 6.16093 6.20096 6.34822 6.37985 6.43276 6.45653 6.48275 6.67384 6.69433 7.06682 7.14316 7.22039 7.42633 7.57257 7.74669 8.04918 8.10422 8.29032 8.59997 8.95906 9.51854 10.97372 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.009182 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.446429 B = 3048.703335 C = 3866.697696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.677 5.677 14 C 0.068 3.932 15 H 0.065 0.935 16 C 0.056 3.944 17 O -0.387 6.387 18 C 0.056 3.944 19 C -0.126 4.126 20 H 0.085 0.915 21 C -0.116 4.116 22 C -0.151 4.151 23 H 0.037 0.963 24 H 0.024 0.976 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.331 0.669 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 6.476 8.129 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.308 5.308 14 C -0.043 4.043 15 H 0.083 0.917 16 C -0.021 4.021 17 O -0.306 6.306 18 C -0.021 4.021 19 C -0.145 4.145 20 H 0.103 0.897 21 C -0.154 4.154 22 C -0.208 4.208 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.716 6.450 7.724 10.727 hybrid contribution 2.183 -0.041 -0.097 2.186 sum -1.533 6.409 7.628 10.080 Atomic orbital electron populations 1.21695 0.98985 0.98344 1.00340 1.21498 0.92082 0.99187 1.01720 1.19214 0.92772 0.91181 0.86154 0.94969 1.21837 0.92590 1.38119 1.05892 0.92882 1.24926 0.97937 0.94974 0.95638 1.69871 1.34896 1.37882 1.09546 0.86667 0.86121 0.78378 0.77254 1.20651 1.21190 1.20074 1.60894 1.55205 1.04634 1.10068 1.22975 0.96124 0.90456 0.94757 0.91707 1.23634 0.97016 0.81392 1.00020 1.88807 1.78063 1.28509 1.35208 1.23126 0.93732 0.98856 0.86403 1.22735 0.95262 0.97118 0.99404 0.89676 1.21561 0.96252 1.00377 0.97173 1.21814 1.01171 1.00477 0.97385 0.94430 0.95646 0.93516 0.89151 0.95089 0.92843 0.85150 0.91786 0.89562 0.93114 0.90438 0.91847 0.91281 0.92958 0.92934 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.73 37.16 0.36 -2.39 16 2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.21 5.13 1.86 -68.87 -0.13 5.00 16 4 H 0.03 0.86 7.84 -51.93 -0.41 0.45 16 5 C -0.55 -14.29 8.37 -34.44 -0.29 -14.57 16 6 H 0.05 1.38 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.56 5.62 -98.73 -0.56 -14.12 16 14 C 0.07 1.25 2.76 -65.58 -0.18 1.07 16 15 H 0.06 1.37 7.48 -51.93 -0.39 0.98 16 16 C 0.06 1.00 7.42 38.33 0.28 1.28 16 17 O -0.39 -6.71 11.52 -35.23 -0.41 -7.11 16 18 C 0.06 0.80 6.94 37.73 0.26 1.06 16 19 C -0.13 -1.89 2.56 -89.09 -0.23 -2.11 16 20 H 0.08 1.24 7.95 -51.93 -0.41 0.82 16 21 C -0.12 -1.63 5.13 -26.73 -0.14 -1.77 16 22 C -0.15 -1.70 9.75 37.16 0.36 -1.34 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.89 7.88 -51.93 -0.41 0.49 16 26 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.33 6.56 8.03 -39.29 -0.32 6.25 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.00 6.82 -51.93 -0.35 0.64 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.54 6.99 -51.93 -0.36 0.17 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -26.91 300.98 -7.48 -34.39 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.73 Total: 5.12 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 0.07 Total: -14.66 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.07 Total: -38.12 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.41 Total: -7.11 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.91 -7.48 -34.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699469481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.113 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds