Wall clock time and date at job start Mon Mar 30 2020 03:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47633 * 2 1 4 4 H 1.09000 * 109.47113 * 304.18568 * 3 2 1 5 5 C 1.50693 * 109.47777 * 184.18170 * 3 2 1 6 6 H 1.08001 * 120.00123 * 240.00525 * 5 3 2 7 7 C 1.37879 * 120.00080 * 59.99986 * 5 3 2 8 8 N 1.31507 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00004 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47160 * 90.00026 * 9 7 5 11 11 H 1.48498 * 109.47000 * 209.99852 * 9 7 5 12 12 H 1.48499 * 109.47024 * 329.99909 * 9 7 5 13 13 N 1.46904 * 109.46837 * 64.17732 * 3 2 1 14 14 C 1.46896 * 111.00097 * 206.02711 * 13 3 2 15 15 H 1.09003 * 110.83180 * 327.59750 * 14 13 3 16 16 C 1.55222 * 111.02522 * 91.30860 * 14 13 3 17 17 O 1.44377 * 103.57215 * 155.07278 * 16 14 13 18 18 C 1.43747 * 106.97245 * 320.01134 * 17 16 14 19 19 C 1.54104 * 107.29322 * 26.51322 * 18 17 16 20 20 H 1.09002 * 110.48906 * 239.15939 * 19 18 17 21 21 C 1.53002 * 110.48809 * 116.64847 * 19 18 17 22 22 C 1.53000 * 109.47222 * 68.24190 * 21 19 18 23 23 H 1.09004 * 109.46996 * 54.79557 * 1 2 3 24 24 H 1.08998 * 109.46998 * 174.79726 * 1 2 3 25 25 H 1.08996 * 109.46807 * 294.79535 * 1 2 3 26 26 H 1.08999 * 109.47383 * 239.99658 * 2 1 3 27 27 H 1.09002 * 109.47278 * 120.00554 * 2 1 3 28 28 H 0.97001 * 119.99703 * 179.97438 * 8 7 5 29 29 H 1.00904 * 111.00090 * 82.07378 * 13 3 2 30 30 H 1.09004 * 110.51876 * 36.57130 * 16 14 13 31 31 H 1.09004 * 110.77797 * 273.69704 * 16 14 13 32 32 H 1.08999 * 109.88031 * 267.09141 * 18 17 16 33 33 H 1.09001 * 110.00512 * 146.00382 * 18 17 16 34 34 H 1.09005 * 109.46943 * 308.24016 * 21 19 18 35 35 H 1.08999 * 109.46816 * 188.24442 * 21 19 18 36 36 H 1.08997 * 109.46822 * 179.97438 * 22 21 19 37 37 H 1.08999 * 109.47430 * 299.99875 * 22 21 19 38 38 H 1.08996 * 109.46894 * 60.00486 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6169 1.9775 -0.8501 5 6 3.5435 1.4437 -0.1036 6 1 4.1383 1.8919 0.6785 7 6 4.1597 0.8726 -1.1968 8 7 3.4354 0.3263 -2.1489 9 14 6.0233 0.8736 -1.3249 10 1 6.5638 -0.3555 -0.6903 11 1 6.4211 0.9082 -2.7552 12 1 6.5665 2.0688 -0.6309 13 7 1.6346 2.1052 1.2467 14 6 1.5346 3.5590 1.0617 15 1 2.2645 3.9079 0.3312 16 6 0.0964 3.9700 0.6470 17 8 -0.0035 5.3421 1.0851 18 6 0.6501 5.4232 2.3628 19 6 1.7047 4.3005 2.4100 20 1 1.5073 3.6265 3.2436 21 6 3.1114 4.8916 2.5225 22 6 3.2799 5.5500 3.8933 23 1 -0.3633 0.5925 -0.8397 24 1 -0.3633 -1.0234 -0.0932 25 1 -0.3633 0.4310 0.9329 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 3.8689 -0.0752 -2.9182 29 1 2.2679 1.8791 1.9990 30 1 -0.6404 3.3495 1.1571 31 1 -0.0287 3.9021 -0.4337 32 1 -0.0782 5.2814 3.1613 33 1 1.1359 6.3928 2.4723 34 1 3.2556 5.6376 1.7409 35 1 3.8493 4.0976 2.4076 36 1 4.2822 5.9706 3.9735 37 1 2.5420 6.3440 4.0082 38 1 3.1357 4.8040 4.6748 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699469481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:23 Heat of formation + Delta-G solvation = -85.192449 kcal Electronic energy + Delta-G solvation = -16786.834808 eV Core-core repulsion = 14241.571380 eV Total energy + Delta-G solvation = -2545.263428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68190 -37.63939 -35.56607 -34.19641 -32.83572 -29.92039 -29.02366 -27.56419 -24.94401 -24.58408 -22.19872 -21.57772 -20.84518 -18.63119 -17.52101 -17.08449 -16.68446 -15.92086 -15.52251 -15.35575 -14.98142 -14.68746 -14.38742 -13.93987 -13.67257 -13.26829 -13.21801 -13.00709 -12.77563 -12.69079 -12.51859 -12.40352 -12.15303 -11.70907 -11.60341 -11.49570 -11.44032 -11.18623 -10.99945 -10.57048 -10.46488 -9.11637 -8.07000 -6.28314 1.36489 1.38409 1.46611 2.38619 2.99939 3.14549 3.57323 3.59723 3.96328 4.01399 4.30338 4.36282 4.48967 4.58149 4.61762 4.65249 4.77169 4.81053 4.87447 4.92897 4.95405 4.99770 5.15912 5.18008 5.19877 5.29917 5.43028 5.45105 5.52557 5.62740 5.75623 5.94457 6.10859 6.19315 6.37810 6.78988 6.99628 7.43055 8.90119 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.009182 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.446429 B = 3048.703335 C = 3866.697696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.223 3.777 4 H -0.002 1.002 5 C -0.557 4.557 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.663 5.663 14 C 0.064 3.936 15 H 0.030 0.970 16 C 0.063 3.937 17 O -0.401 6.401 18 C 0.054 3.946 19 C -0.116 4.116 20 H 0.096 0.904 21 C -0.114 4.114 22 C -0.145 4.145 23 H 0.030 0.970 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.334 0.666 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 7.161 9.949 12.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.016 0.984 5 C -0.596 4.596 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.294 5.294 14 C -0.047 4.047 15 H 0.048 0.952 16 C -0.014 4.014 17 O -0.320 6.320 18 C -0.022 4.022 19 C -0.135 4.135 20 H 0.115 0.885 21 C -0.152 4.152 22 C -0.202 4.202 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.777 7.146 9.562 12.521 hybrid contribution 2.192 -0.220 -0.660 2.299 sum -1.586 6.926 8.902 11.390 Atomic orbital electron populations 1.21556 0.96345 0.99563 1.00689 1.21360 0.94426 0.98268 1.00095 1.18957 0.91500 0.91479 0.86590 0.98396 1.22148 0.93959 1.37665 1.05797 0.93142 1.25645 1.01975 0.94879 0.95507 1.70002 1.36388 1.38592 1.09955 0.85723 0.81320 0.78477 0.77107 1.20044 1.21116 1.19702 1.60809 1.54577 1.05643 1.08351 1.22956 0.95911 0.89567 0.96298 0.95188 1.23480 0.96467 0.82022 0.99434 1.88792 1.78500 1.27880 1.36822 1.23339 0.93895 0.99335 0.85674 1.22684 0.96251 0.97231 0.97325 0.88532 1.21527 0.95050 0.99655 0.98965 1.21764 1.02202 1.00868 0.95337 0.95129 0.93785 0.92214 0.92197 0.95165 0.92925 0.84839 0.90944 0.90933 0.90828 0.88639 0.92731 0.93351 0.92204 0.91399 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.73 71.98 0.70 -4.21 16 2 C -0.10 -4.86 5.45 30.59 0.17 -4.69 16 3 C 0.22 10.91 1.86 44.17 0.08 11.00 16 4 H 0.00 -0.11 7.84 -2.39 -0.02 -0.13 16 5 C -0.56 -29.68 8.37 25.60 0.21 -29.46 16 6 H 0.05 2.65 7.73 -2.91 -0.02 2.63 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -51.86 11.29 21.45 0.24 -51.62 16 9 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 N -0.66 -26.51 5.62 -466.27 -2.62 -29.13 16 14 C 0.06 2.35 2.76 46.30 0.13 2.48 16 15 H 0.03 1.32 7.48 -2.39 -0.02 1.30 16 16 C 0.06 2.21 7.42 72.74 0.54 2.75 16 17 O -0.40 -13.32 11.52 -148.98 -1.72 -15.03 16 18 C 0.05 1.40 6.94 72.36 0.50 1.90 16 19 C -0.12 -3.27 2.56 -9.80 -0.03 -3.30 16 20 H 0.10 2.54 7.95 -2.39 -0.02 2.52 16 21 C -0.11 -3.06 5.13 30.59 0.16 -2.90 16 22 C -0.14 -2.84 9.75 71.98 0.70 -2.14 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 25 H 0.06 2.19 7.88 -2.39 -0.02 2.17 16 26 H 0.06 3.22 5.97 -2.39 -0.01 3.20 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.33 13.05 8.03 -89.69 -0.72 12.33 16 30 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 2.15 6.82 -2.39 -0.02 2.13 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.14 6.99 -2.39 -0.02 1.12 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -57.88 300.98 1.84 -56.04 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.29 Total: 21.54 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 3.62 Total: -27.02 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -2.38 Total: -80.75 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -1.72 Total: -15.03 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -57.88 1.84 -56.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699469481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.150 kcal (2) G-P(sol) polarization free energy of solvation -57.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds