Wall clock time and date at job start Mon Mar 30 2020 03:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47378 * 2 1 4 4 H 1.09003 * 109.47200 * 306.24038 * 3 2 1 5 5 C 1.50698 * 109.47165 * 186.23529 * 3 2 1 6 6 H 1.07999 * 120.00147 * 240.00349 * 5 3 2 7 7 C 1.37882 * 119.99860 * 59.72841 * 5 3 2 8 8 N 1.31514 * 120.00049 * 0.27472 * 7 5 3 9 9 Si 1.86804 * 119.99822 * 180.27434 * 7 5 3 10 10 H 1.48494 * 109.47353 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46968 * 120.00278 * 9 7 5 12 12 H 1.48499 * 109.47067 * 239.99813 * 9 7 5 13 13 N 1.46899 * 109.46846 * 66.23995 * 3 2 1 14 14 C 1.46908 * 110.99626 * 255.30058 * 13 3 2 15 15 H 1.08997 * 110.46115 * 46.18609 * 14 13 3 16 16 C 1.54485 * 110.50714 * 283.58365 * 14 13 3 17 17 O 1.44433 * 104.80007 * 217.37684 * 16 14 13 18 18 C 1.44426 * 105.27281 * 40.51331 * 17 16 14 19 19 C 1.54475 * 104.80447 * 319.48456 * 18 17 16 20 20 H 1.08996 * 110.51292 * 265.33196 * 19 18 17 21 21 C 1.53007 * 110.50950 * 142.62332 * 19 18 17 22 22 C 1.53003 * 109.46916 * 69.19451 * 21 19 18 23 23 H 1.09005 * 109.46839 * 299.49458 * 1 2 3 24 24 H 1.08999 * 109.47244 * 59.48898 * 1 2 3 25 25 H 1.09003 * 109.47194 * 179.49617 * 1 2 3 26 26 H 1.09007 * 109.46457 * 240.00203 * 2 1 3 27 27 H 1.08997 * 109.47536 * 120.00975 * 2 1 3 28 28 H 0.96993 * 119.99870 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00067 * 19.24774 * 13 3 2 30 30 H 1.09000 * 110.37319 * 336.20508 * 16 14 13 31 31 H 1.08999 * 110.37293 * 98.44050 * 16 14 13 32 32 H 1.09003 * 110.37230 * 78.32130 * 18 17 16 33 33 H 1.09002 * 110.37036 * 200.65139 * 18 17 16 34 34 H 1.09002 * 109.47356 * 189.19340 * 21 19 18 35 35 H 1.09001 * 109.47087 * 309.19395 * 21 19 18 36 36 H 1.09002 * 109.47017 * 300.00097 * 22 21 19 37 37 H 1.09001 * 109.47287 * 60.00067 * 22 21 19 38 38 H 1.08995 * 109.46781 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5884 1.9876 -0.8289 5 6 3.5391 1.4452 -0.1543 6 1 4.1601 1.8842 0.6125 7 6 4.1181 0.8823 -1.2719 8 7 3.3619 0.3477 -2.2057 9 14 5.9767 0.8788 -1.4595 10 1 6.5945 1.5370 -0.2805 11 1 6.4618 -0.5213 -1.5562 12 1 6.3512 1.6186 -2.6915 13 7 1.6772 2.0901 1.2676 14 6 0.5558 3.0207 1.0811 15 1 -0.2306 2.5555 0.4870 16 6 1.0409 4.3252 0.4106 17 8 0.2740 5.3727 1.0436 18 6 0.2205 5.0134 2.4414 19 6 0.0037 3.4840 2.4478 20 1 -1.0574 3.2489 2.5307 21 6 0.7884 2.8361 3.5905 22 6 0.1631 3.2346 4.9288 23 1 -0.3633 0.5060 0.8945 24 1 -0.3634 0.5217 -0.8853 25 1 -0.3634 -1.0276 -0.0090 26 1 1.8932 -0.5139 -0.8901 27 1 1.8934 -0.5140 0.8898 28 1 3.7693 -0.0486 -2.9917 29 1 1.4637 1.4041 1.9760 30 1 2.1056 4.4719 0.5920 31 1 0.8392 4.2991 -0.6602 32 1 1.1594 5.2657 2.9343 33 1 -0.6132 5.5169 2.9310 34 1 0.7575 1.7518 3.4835 35 1 1.8239 3.1750 3.5580 36 1 0.1940 4.3189 5.0357 37 1 -0.8724 2.8957 4.9613 38 1 0.7218 2.7727 5.7427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699469483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:27 Heat of formation + Delta-G solvation = -56.795376 kcal Electronic energy + Delta-G solvation = -16923.674357 eV Core-core repulsion = 14379.642318 eV Total energy + Delta-G solvation = -2544.032039 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45433 -36.11143 -34.29535 -32.27525 -30.86701 -28.56847 -27.57645 -25.97909 -23.74557 -22.76990 -21.44339 -19.74884 -19.03838 -16.52680 -15.87378 -15.45763 -15.05530 -14.80837 -14.55250 -13.66915 -13.53232 -13.02792 -12.94484 -12.66119 -12.23604 -11.81746 -11.76057 -11.27590 -11.10193 -11.05527 -10.81810 -10.64379 -10.53964 -10.30515 -10.24277 -9.97295 -9.75308 -9.70502 -9.35601 -9.04302 -8.32893 -7.23304 -5.97314 -4.00477 3.31739 3.39983 3.45081 4.35634 4.47031 4.89538 4.96578 5.18388 5.27531 5.33261 5.45275 5.55378 5.59539 5.81385 5.86440 5.99620 6.07847 6.10069 6.10800 6.15113 6.20379 6.35691 6.37359 6.43711 6.53182 6.63510 6.77836 6.93443 7.13987 7.18346 7.42984 7.74650 7.91457 8.29936 8.53837 8.60104 9.07923 9.64765 11.08600 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027965 B = 0.007890 C = 0.007492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.026182 B = 3547.789009 C = 3736.312278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.215 3.785 4 H 0.028 0.972 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.672 5.672 14 C 0.060 3.940 15 H 0.045 0.955 16 C 0.057 3.943 17 O -0.387 6.387 18 C 0.056 3.944 19 C -0.121 4.121 20 H 0.073 0.927 21 C -0.108 4.108 22 C -0.153 4.153 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.101 0.899 27 H 0.035 0.965 28 H 0.258 0.742 29 H 0.328 0.672 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 3.911 9.071 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.046 0.954 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.306 5.306 14 C -0.051 4.051 15 H 0.063 0.937 16 C -0.020 4.020 17 O -0.306 6.306 18 C -0.021 4.021 19 C -0.140 4.140 20 H 0.091 0.909 21 C -0.145 4.145 22 C -0.210 4.210 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.119 0.881 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.157 4.505 8.733 11.596 hybrid contribution 0.263 -1.001 -0.310 1.080 sum -5.895 3.504 8.424 10.862 Atomic orbital electron populations 1.21900 0.99546 0.99422 0.99734 1.22208 0.91470 1.01899 1.03013 1.19247 0.95587 0.88909 0.85505 0.95442 1.21272 0.91268 1.35860 1.04385 0.91862 1.24970 0.98042 0.95689 0.95980 1.69875 1.34517 1.39769 1.09611 0.86495 0.85827 0.77463 0.77931 1.19773 1.21279 1.21238 1.61031 1.35576 1.22295 1.11730 1.22832 0.93149 0.95095 0.94046 0.93699 1.23504 0.96414 0.84968 0.97121 1.89047 1.74854 1.46771 1.19885 1.23385 1.00856 0.93870 0.84000 1.22649 0.99677 0.95928 0.95792 0.90891 1.21425 1.00296 1.00453 0.92375 1.21839 1.00454 1.01100 0.97635 0.94854 0.93739 0.94621 0.88089 0.94655 0.93167 0.85191 0.90641 0.89764 0.92305 0.90212 0.91695 0.90276 0.93011 0.93253 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.96 37.16 0.33 -2.52 16 2 C -0.15 -3.35 5.08 -26.73 -0.14 -3.48 16 3 C 0.21 5.13 1.95 -68.87 -0.13 5.00 16 4 H 0.03 0.73 7.32 -51.93 -0.38 0.35 16 5 C -0.49 -13.14 8.84 -34.44 -0.30 -13.45 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.45 5.28 -17.82 -0.09 1.36 16 8 N -0.90 -25.23 11.28 55.43 0.63 -24.60 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.67 -13.41 5.05 -99.31 -0.50 -13.91 16 14 C 0.06 1.07 2.65 -66.14 -0.18 0.89 16 15 H 0.05 0.84 6.57 -51.93 -0.34 0.50 16 16 C 0.06 1.06 6.79 37.94 0.26 1.32 16 17 O -0.39 -6.81 11.65 -35.23 -0.41 -7.22 16 18 C 0.06 0.80 6.45 37.93 0.24 1.05 16 19 C -0.12 -1.76 3.13 -89.05 -0.28 -2.04 16 20 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 21 C -0.11 -1.43 4.23 -26.73 -0.11 -1.54 16 22 C -0.15 -1.64 9.78 37.16 0.36 -1.27 16 23 H 0.03 0.58 6.55 -51.93 -0.34 0.24 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 2.63 5.92 -51.92 -0.31 2.33 16 27 H 0.03 0.79 8.02 -51.93 -0.42 0.37 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.33 6.15 5.36 -39.30 -0.21 5.94 16 30 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 31 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.06 0.83 7.76 -51.93 -0.40 0.42 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.89 6.48 -51.93 -0.34 0.55 16 35 H 0.08 1.16 7.85 -51.93 -0.41 0.76 16 36 H 0.05 0.52 7.59 -51.93 -0.39 0.12 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -27.47 292.59 -7.39 -34.87 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.46 Total: 4.85 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.04 Total: -14.69 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.12 Total: -38.51 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.41 Total: -7.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.47 -7.39 -34.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699469483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.930 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds