Wall clock time and date at job start Mon Mar 30 2020 03:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47378 * 2 1 4 4 H 1.09003 * 109.47200 * 306.24038 * 3 2 1 5 5 C 1.50698 * 109.47165 * 186.23529 * 3 2 1 6 6 H 1.07999 * 120.00147 * 240.00349 * 5 3 2 7 7 C 1.37882 * 119.99860 * 59.72841 * 5 3 2 8 8 N 1.31514 * 120.00049 * 0.27472 * 7 5 3 9 9 Si 1.86804 * 119.99822 * 180.27434 * 7 5 3 10 10 H 1.48494 * 109.47353 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46968 * 120.00278 * 9 7 5 12 12 H 1.48499 * 109.47067 * 239.99813 * 9 7 5 13 13 N 1.46899 * 109.46846 * 66.23995 * 3 2 1 14 14 C 1.46908 * 110.99626 * 255.30058 * 13 3 2 15 15 H 1.08997 * 110.46115 * 46.18609 * 14 13 3 16 16 C 1.54485 * 110.50714 * 283.58365 * 14 13 3 17 17 O 1.44433 * 104.80007 * 217.37684 * 16 14 13 18 18 C 1.44426 * 105.27281 * 40.51331 * 17 16 14 19 19 C 1.54475 * 104.80447 * 319.48456 * 18 17 16 20 20 H 1.08996 * 110.51292 * 265.33196 * 19 18 17 21 21 C 1.53007 * 110.50950 * 142.62332 * 19 18 17 22 22 C 1.53003 * 109.46916 * 69.19451 * 21 19 18 23 23 H 1.09005 * 109.46839 * 299.49458 * 1 2 3 24 24 H 1.08999 * 109.47244 * 59.48898 * 1 2 3 25 25 H 1.09003 * 109.47194 * 179.49617 * 1 2 3 26 26 H 1.09007 * 109.46457 * 240.00203 * 2 1 3 27 27 H 1.08997 * 109.47536 * 120.00975 * 2 1 3 28 28 H 0.96993 * 119.99870 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00067 * 19.24774 * 13 3 2 30 30 H 1.09000 * 110.37319 * 336.20508 * 16 14 13 31 31 H 1.08999 * 110.37293 * 98.44050 * 16 14 13 32 32 H 1.09003 * 110.37230 * 78.32130 * 18 17 16 33 33 H 1.09002 * 110.37036 * 200.65139 * 18 17 16 34 34 H 1.09002 * 109.47356 * 189.19340 * 21 19 18 35 35 H 1.09001 * 109.47087 * 309.19395 * 21 19 18 36 36 H 1.09002 * 109.47017 * 300.00097 * 22 21 19 37 37 H 1.09001 * 109.47287 * 60.00067 * 22 21 19 38 38 H 1.08995 * 109.46781 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5884 1.9876 -0.8289 5 6 3.5391 1.4452 -0.1543 6 1 4.1601 1.8842 0.6125 7 6 4.1181 0.8823 -1.2719 8 7 3.3619 0.3477 -2.2057 9 14 5.9767 0.8788 -1.4595 10 1 6.5945 1.5370 -0.2805 11 1 6.4618 -0.5213 -1.5562 12 1 6.3512 1.6186 -2.6915 13 7 1.6772 2.0901 1.2676 14 6 0.5558 3.0207 1.0811 15 1 -0.2306 2.5555 0.4870 16 6 1.0409 4.3252 0.4106 17 8 0.2740 5.3727 1.0436 18 6 0.2205 5.0134 2.4414 19 6 0.0037 3.4840 2.4478 20 1 -1.0574 3.2489 2.5307 21 6 0.7884 2.8361 3.5905 22 6 0.1631 3.2346 4.9288 23 1 -0.3633 0.5060 0.8945 24 1 -0.3634 0.5217 -0.8853 25 1 -0.3634 -1.0276 -0.0090 26 1 1.8932 -0.5139 -0.8901 27 1 1.8934 -0.5140 0.8898 28 1 3.7693 -0.0486 -2.9917 29 1 1.4637 1.4041 1.9760 30 1 2.1056 4.4719 0.5920 31 1 0.8392 4.2991 -0.6602 32 1 1.1594 5.2657 2.9343 33 1 -0.6132 5.5169 2.9310 34 1 0.7575 1.7518 3.4835 35 1 1.8239 3.1750 3.5580 36 1 0.1940 4.3189 5.0357 37 1 -0.8724 2.8957 4.9613 38 1 0.7218 2.7727 5.7427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699469483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:26 Heat of formation + Delta-G solvation = -73.868514 kcal Electronic energy + Delta-G solvation = -16924.414704 eV Core-core repulsion = 14379.642318 eV Total energy + Delta-G solvation = -2544.772386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82280 -37.81032 -35.59038 -34.13347 -32.47528 -29.98182 -28.95914 -27.81169 -25.05845 -24.41477 -22.76323 -21.54555 -20.38176 -18.42397 -17.34278 -16.94010 -16.62757 -16.36177 -16.04699 -15.34097 -14.83849 -14.72189 -14.10311 -14.05959 -13.70492 -13.43356 -13.14512 -13.00121 -12.71497 -12.51231 -12.37084 -12.23480 -11.93975 -11.90618 -11.60659 -11.56667 -11.34668 -11.33935 -10.95368 -10.72504 -10.40448 -8.92133 -8.05271 -6.15640 1.40918 1.43781 1.55018 2.45221 3.04916 3.21292 3.61078 3.65094 3.95656 3.98876 4.33555 4.41630 4.43688 4.46459 4.53477 4.62073 4.66597 4.68613 4.88311 4.90087 4.96157 4.97812 5.05199 5.12946 5.18555 5.29549 5.36685 5.40782 5.53909 5.58634 5.75012 5.86530 5.90807 6.37109 6.69327 6.90154 6.99200 7.53779 8.98469 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027965 B = 0.007890 C = 0.007492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.026182 B = 3547.789009 C = 3736.312278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.223 3.777 4 H -0.004 1.004 5 C -0.505 4.505 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.670 5.670 14 C 0.058 3.942 15 H 0.039 0.961 16 C 0.061 3.939 17 O -0.398 6.398 18 C 0.052 3.948 19 C -0.112 4.112 20 H 0.092 0.908 21 C -0.104 4.104 22 C -0.147 4.147 23 H 0.052 0.948 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.259 0.741 29 H 0.337 0.663 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 4.108 10.817 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.181 4.181 3 C 0.115 3.885 4 H 0.014 0.986 5 C -0.544 4.544 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.304 5.304 14 C -0.053 4.053 15 H 0.057 0.943 16 C -0.017 4.017 17 O -0.316 6.316 18 C -0.024 4.024 19 C -0.131 4.131 20 H 0.110 0.890 21 C -0.142 4.142 22 C -0.204 4.204 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.158 0.842 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.945 4.707 10.501 13.441 hybrid contribution 0.489 -1.021 -0.830 1.404 sum -6.456 3.686 9.671 12.198 Atomic orbital electron populations 1.21753 0.96605 1.00848 1.00195 1.22032 0.94095 1.00563 1.01395 1.18968 0.93922 0.89483 0.86165 0.98612 1.21565 0.92987 1.35669 1.04203 0.92961 1.25663 1.01953 0.95518 0.95824 1.70002 1.35975 1.40321 1.09925 0.85577 0.81187 0.77507 0.77746 1.19450 1.20754 1.21108 1.60869 1.37098 1.22335 1.10085 1.22846 0.92160 0.93987 0.96323 0.94338 1.23309 0.95467 0.86066 0.96838 1.89035 1.74405 1.46462 1.21738 1.23632 1.02372 0.94011 0.82417 1.22643 1.00637 0.95932 0.93863 0.88999 1.21365 0.99351 0.99961 0.93534 1.21784 1.00922 1.01789 0.95902 0.92910 0.94712 0.92665 0.91428 0.94431 0.93219 0.84198 0.92659 0.91015 0.92060 0.87089 0.92150 0.92083 0.92114 0.92097 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.96 71.98 0.64 -4.45 16 2 C -0.14 -6.48 5.08 30.59 0.16 -6.33 16 3 C 0.22 10.85 1.95 44.17 0.09 10.94 16 4 H 0.00 -0.22 7.32 -2.39 -0.02 -0.24 16 5 C -0.51 -27.70 8.84 25.60 0.23 -27.47 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.45 5.28 84.66 0.45 0.90 16 8 N -0.92 -52.86 11.28 21.45 0.24 -52.62 16 9 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 N -0.67 -26.65 5.05 -468.10 -2.36 -29.01 16 14 C 0.06 2.03 2.65 45.93 0.12 2.15 16 15 H 0.04 1.42 6.57 -2.39 -0.02 1.40 16 16 C 0.06 2.29 6.79 72.49 0.49 2.78 16 17 O -0.40 -13.59 11.65 -148.98 -1.74 -15.32 16 18 C 0.05 1.37 6.45 72.48 0.47 1.83 16 19 C -0.11 -2.97 3.13 -9.78 -0.03 -3.00 16 20 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 21 C -0.10 -2.53 4.23 30.60 0.13 -2.40 16 22 C -0.15 -2.64 9.78 71.98 0.70 -1.93 16 23 H 0.05 1.74 6.55 -2.38 -0.02 1.73 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 3.59 5.92 -2.38 -0.01 3.58 16 27 H 0.04 1.66 8.02 -2.39 -0.02 1.64 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.34 12.32 5.36 -89.70 -0.48 11.83 16 30 H 0.06 2.28 8.06 -2.39 -0.02 2.27 16 31 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.06 1.59 7.76 -2.39 -0.02 1.57 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 1.52 6.48 -2.39 -0.02 1.50 16 35 H 0.06 1.71 7.85 -2.39 -0.02 1.69 16 36 H 0.06 0.99 7.59 -2.39 -0.02 0.97 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -59.35 292.59 2.15 -57.20 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.54 Total: 20.50 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 3.44 Total: -26.99 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -2.12 Total: -81.63 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -1.74 Total: -15.32 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -59.35 2.15 -57.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699469483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.670 kcal (2) G-P(sol) polarization free energy of solvation -59.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds