Wall clock time and date at job start Mon Mar 30 2020 03:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 H 1.08998 * 109.47042 * 304.20997 * 3 2 1 5 5 C 1.50705 * 109.46925 * 184.21618 * 3 2 1 6 6 H 1.08000 * 119.99418 * 240.00067 * 5 3 2 7 7 C 1.37878 * 120.00179 * 59.99719 * 5 3 2 8 8 N 1.31510 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99902 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47119 * 59.99865 * 9 7 5 11 11 H 1.48495 * 109.46901 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46984 * 300.00225 * 9 7 5 13 13 N 1.46902 * 109.47316 * 64.21642 * 3 2 1 14 14 C 1.46896 * 111.00056 * 205.49940 * 13 3 2 15 15 H 1.08998 * 110.45527 * 313.31509 * 14 13 3 16 16 C 1.54484 * 110.50999 * 75.91473 * 14 13 3 17 17 O 1.44424 * 104.80035 * 142.62105 * 16 14 13 18 18 C 1.44420 * 105.27884 * 319.48948 * 17 16 14 19 19 C 1.54484 * 104.80080 * 40.51429 * 18 17 16 20 20 H 1.08998 * 110.51528 * 94.66829 * 19 18 17 21 21 C 1.53000 * 110.50710 * 217.37715 * 19 18 17 22 22 C 1.53003 * 109.47034 * 291.19780 * 21 19 18 23 23 H 1.08997 * 109.47377 * 64.43935 * 1 2 3 24 24 H 1.08998 * 109.47271 * 184.44174 * 1 2 3 25 25 H 1.09001 * 109.46732 * 304.43697 * 1 2 3 26 26 H 1.09002 * 109.47032 * 240.00014 * 2 1 3 27 27 H 1.09003 * 109.46870 * 120.00244 * 2 1 3 28 28 H 0.96996 * 119.99745 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00073 * 81.54165 * 13 3 2 30 30 H 1.08997 * 110.37735 * 261.45403 * 16 14 13 31 31 H 1.08999 * 110.37140 * 23.68486 * 16 14 13 32 32 H 1.09005 * 110.37383 * 159.33665 * 18 17 16 33 33 H 1.08994 * 110.37738 * 281.67858 * 18 17 16 34 34 H 1.09001 * 109.47587 * 51.19985 * 21 19 18 35 35 H 1.09000 * 109.47047 * 171.20077 * 21 19 18 36 36 H 1.08994 * 109.47358 * 60.00348 * 22 21 19 37 37 H 1.09002 * 109.46882 * 180.02562 * 22 21 19 38 38 H 1.08999 * 109.47026 * 299.99728 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6164 1.9776 -0.8498 5 6 3.5434 1.4437 -0.1045 6 1 4.1386 1.8919 0.6774 7 6 4.1590 0.8728 -1.1981 8 7 3.4341 0.3275 -2.1504 9 14 6.0225 0.8737 -1.3272 10 1 6.5993 0.1442 -0.1694 11 1 6.4316 0.2046 -2.5881 12 1 6.5180 2.2737 -1.3268 13 7 1.6352 2.1050 1.2471 14 6 1.5472 3.5601 1.0657 15 1 2.4286 3.9329 0.5440 16 6 0.2628 3.9323 0.2923 17 8 -0.1917 5.1605 0.9014 18 6 0.0177 4.9824 2.3191 19 6 1.3823 4.2668 2.4297 20 1 2.1821 4.9911 2.5837 21 6 1.3596 3.2417 3.5652 22 6 1.2820 3.9702 4.9085 23 1 -0.3634 0.4434 -0.9270 24 1 -0.3634 -1.0245 0.0796 25 1 -0.3633 0.5812 0.8476 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8672 -0.0739 -2.9199 29 1 2.2641 1.8720 2.0009 30 1 0.4875 4.0923 -0.7622 31 1 -0.4882 3.1504 0.4051 32 1 0.0544 5.9490 2.8217 33 1 -0.7714 4.3624 2.7444 34 1 0.4903 2.5937 3.4526 35 1 2.2680 2.6402 3.5300 36 1 0.3737 4.5715 4.9437 37 1 1.2663 3.2398 5.7175 38 1 2.1513 4.6180 5.0212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699469484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:29 Heat of formation + Delta-G solvation = -61.124536 kcal Electronic energy + Delta-G solvation = -16910.159784 eV Core-core repulsion = 14365.940019 eV Total energy + Delta-G solvation = -2544.219765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39405 -35.89043 -34.29219 -32.22678 -31.05101 -28.49863 -27.58832 -25.74141 -23.76099 -22.72176 -21.45132 -19.53732 -18.92239 -16.65926 -16.07267 -15.42524 -15.06710 -14.74982 -14.32119 -13.67441 -13.48172 -13.01490 -12.88157 -12.65216 -12.14148 -11.75684 -11.47470 -11.21174 -11.16029 -11.03209 -10.95758 -10.66490 -10.51464 -10.29351 -10.16919 -10.02587 -9.60568 -9.46864 -9.37270 -9.07078 -8.39543 -7.32223 -6.02424 -4.15539 3.25964 3.31538 3.33650 4.36675 4.38411 4.95412 5.02075 5.20626 5.22736 5.33726 5.48505 5.57251 5.63156 5.84160 5.91616 6.03638 6.12313 6.16676 6.22948 6.35962 6.39817 6.43808 6.49868 6.61925 6.67564 6.70719 7.04277 7.14618 7.21294 7.42509 7.58306 7.75359 8.05614 8.11357 8.29970 8.61308 8.96465 9.52254 10.97786 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.008243 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.199214 B = 3396.053893 C = 3667.029494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.213 3.787 4 H 0.033 0.967 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.065 3.935 15 H 0.054 0.946 16 C 0.056 3.944 17 O -0.386 6.386 18 C 0.056 3.944 19 C -0.121 4.121 20 H 0.074 0.926 21 C -0.107 4.107 22 C -0.153 4.153 23 H 0.035 0.965 24 H 0.024 0.976 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.333 0.667 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 5.106 8.751 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.105 3.895 4 H 0.051 0.949 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.046 4.046 15 H 0.072 0.928 16 C -0.021 4.021 17 O -0.305 6.305 18 C -0.021 4.021 19 C -0.140 4.140 20 H 0.092 0.908 21 C -0.145 4.145 22 C -0.210 4.210 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.467 5.091 8.341 11.197 hybrid contribution 2.239 -0.004 -0.164 2.245 sum -3.228 5.087 8.177 10.157 Atomic orbital electron populations 1.21728 0.99044 0.98520 1.00345 1.21488 0.92040 0.99210 1.01667 1.19174 0.92672 0.91233 0.86451 0.94925 1.21808 0.92694 1.38206 1.05902 0.93013 1.24923 0.97939 0.94950 0.95636 1.69859 1.34994 1.37859 1.09494 0.86723 0.86093 0.78180 0.77380 1.20300 1.21205 1.20420 1.61131 1.55652 1.04476 1.09887 1.22640 0.97353 0.90989 0.93607 0.92780 1.23497 0.95408 0.85825 0.97335 1.89050 1.85304 1.37377 1.18728 1.23393 0.95777 0.99739 0.83224 1.22645 0.97796 0.97625 0.95953 0.90798 1.21412 1.03274 0.97399 0.92381 1.21841 1.01232 1.00348 0.97625 0.94563 0.95651 0.93137 0.89206 0.95148 0.92787 0.84766 0.89743 0.91433 0.90212 0.92461 0.90586 0.91462 0.93102 0.92973 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.85 37.16 0.37 -2.43 16 2 C -0.11 -2.46 5.45 -26.73 -0.15 -2.61 16 3 C 0.21 5.06 1.85 -68.86 -0.13 4.93 16 4 H 0.03 0.86 7.30 -51.93 -0.38 0.48 16 5 C -0.55 -14.41 8.32 -34.44 -0.29 -14.70 16 6 H 0.05 1.36 7.73 -52.49 -0.41 0.95 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.66 11.30 55.43 0.63 -24.03 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.41 4.55 -99.31 -0.45 -13.86 16 14 C 0.07 1.21 3.27 -66.15 -0.22 0.99 16 15 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 16 C 0.06 1.02 6.59 37.94 0.25 1.27 16 17 O -0.39 -6.74 11.65 -35.23 -0.41 -7.15 16 18 C 0.06 0.80 6.44 37.94 0.24 1.04 16 19 C -0.12 -1.81 3.13 -89.05 -0.28 -2.09 16 20 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 21 C -0.11 -1.44 4.23 -26.73 -0.11 -1.55 16 22 C -0.15 -1.68 9.78 37.16 0.36 -1.31 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.97 7.61 -51.93 -0.40 0.57 16 26 H 0.09 2.36 5.97 -51.93 -0.31 2.05 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.33 6.51 5.96 -39.29 -0.23 6.27 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.78 7.77 -51.93 -0.40 0.38 16 34 H 0.08 1.08 7.85 -51.93 -0.41 0.67 16 35 H 0.07 0.96 6.51 -51.93 -0.34 0.63 16 36 H 0.05 0.51 7.57 -51.93 -0.39 0.12 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 296.18 15.07 4.46 4.46 Total: -1.00 -26.94 296.18 -7.44 -34.38 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.61 Total: 4.97 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.04 Total: -14.70 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.17 Total: -37.89 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.41 Total: -7.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.94 -7.44 -34.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699469484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.742 kcal (2) G-P(sol) polarization free energy of solvation -26.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds