Wall clock time and date at job start Mon Mar 30 2020 03:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 H 1.08998 * 109.47042 * 304.20997 * 3 2 1 5 5 C 1.50705 * 109.46925 * 184.21618 * 3 2 1 6 6 H 1.08000 * 119.99418 * 240.00067 * 5 3 2 7 7 C 1.37878 * 120.00179 * 59.99719 * 5 3 2 8 8 N 1.31510 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99902 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47119 * 59.99865 * 9 7 5 11 11 H 1.48495 * 109.46901 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46984 * 300.00225 * 9 7 5 13 13 N 1.46902 * 109.47316 * 64.21642 * 3 2 1 14 14 C 1.46896 * 111.00056 * 205.49940 * 13 3 2 15 15 H 1.08998 * 110.45527 * 313.31509 * 14 13 3 16 16 C 1.54484 * 110.50999 * 75.91473 * 14 13 3 17 17 O 1.44424 * 104.80035 * 142.62105 * 16 14 13 18 18 C 1.44420 * 105.27884 * 319.48948 * 17 16 14 19 19 C 1.54484 * 104.80080 * 40.51429 * 18 17 16 20 20 H 1.08998 * 110.51528 * 94.66829 * 19 18 17 21 21 C 1.53000 * 110.50710 * 217.37715 * 19 18 17 22 22 C 1.53003 * 109.47034 * 291.19780 * 21 19 18 23 23 H 1.08997 * 109.47377 * 64.43935 * 1 2 3 24 24 H 1.08998 * 109.47271 * 184.44174 * 1 2 3 25 25 H 1.09001 * 109.46732 * 304.43697 * 1 2 3 26 26 H 1.09002 * 109.47032 * 240.00014 * 2 1 3 27 27 H 1.09003 * 109.46870 * 120.00244 * 2 1 3 28 28 H 0.96996 * 119.99745 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00073 * 81.54165 * 13 3 2 30 30 H 1.08997 * 110.37735 * 261.45403 * 16 14 13 31 31 H 1.08999 * 110.37140 * 23.68486 * 16 14 13 32 32 H 1.09005 * 110.37383 * 159.33665 * 18 17 16 33 33 H 1.08994 * 110.37738 * 281.67858 * 18 17 16 34 34 H 1.09001 * 109.47587 * 51.19985 * 21 19 18 35 35 H 1.09000 * 109.47047 * 171.20077 * 21 19 18 36 36 H 1.08994 * 109.47358 * 60.00348 * 22 21 19 37 37 H 1.09002 * 109.46882 * 180.02562 * 22 21 19 38 38 H 1.08999 * 109.47026 * 299.99728 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6164 1.9776 -0.8498 5 6 3.5434 1.4437 -0.1045 6 1 4.1386 1.8919 0.6774 7 6 4.1590 0.8728 -1.1981 8 7 3.4341 0.3275 -2.1504 9 14 6.0225 0.8737 -1.3272 10 1 6.5993 0.1442 -0.1694 11 1 6.4316 0.2046 -2.5881 12 1 6.5180 2.2737 -1.3268 13 7 1.6352 2.1050 1.2471 14 6 1.5472 3.5601 1.0657 15 1 2.4286 3.9329 0.5440 16 6 0.2628 3.9323 0.2923 17 8 -0.1917 5.1605 0.9014 18 6 0.0177 4.9824 2.3191 19 6 1.3823 4.2668 2.4297 20 1 2.1821 4.9911 2.5837 21 6 1.3596 3.2417 3.5652 22 6 1.2820 3.9702 4.9085 23 1 -0.3634 0.4434 -0.9270 24 1 -0.3634 -1.0245 0.0796 25 1 -0.3633 0.5812 0.8476 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8672 -0.0739 -2.9199 29 1 2.2641 1.8720 2.0009 30 1 0.4875 4.0923 -0.7622 31 1 -0.4882 3.1504 0.4051 32 1 0.0544 5.9490 2.8217 33 1 -0.7714 4.3624 2.7444 34 1 0.4903 2.5937 3.4526 35 1 2.2680 2.6402 3.5300 36 1 0.3737 4.5715 4.9437 37 1 1.2663 3.2398 5.7175 38 1 2.1513 4.6180 5.0212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699469484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:29 Heat of formation + Delta-G solvation = -77.304616 kcal Electronic energy + Delta-G solvation = -16910.861405 eV Core-core repulsion = 14365.940019 eV Total energy + Delta-G solvation = -2544.921386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76764 -37.62259 -35.60984 -34.05441 -32.72680 -29.91018 -28.96923 -27.59297 -25.08222 -24.37737 -22.78502 -21.32261 -20.32941 -18.66399 -17.42336 -16.91972 -16.62446 -16.35050 -15.78716 -15.33835 -14.81115 -14.73237 -14.17251 -14.00279 -13.58447 -13.25690 -13.13273 -13.00053 -12.74762 -12.68438 -12.30770 -12.30158 -12.03939 -11.69771 -11.58650 -11.45622 -11.34315 -11.20072 -10.97306 -10.70844 -10.44920 -9.08462 -8.06375 -6.28231 1.37658 1.38330 1.45590 2.38832 3.04574 3.15241 3.62505 3.67686 3.97342 4.01331 4.37225 4.43062 4.48686 4.61437 4.63387 4.67707 4.78933 4.89239 4.91308 4.94835 4.99291 5.04152 5.15237 5.17540 5.29841 5.40908 5.44277 5.52377 5.58061 5.63023 5.75303 5.90084 6.11954 6.20855 6.38121 6.81134 7.01181 7.43186 8.89999 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.008243 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.199214 B = 3396.053893 C = 3667.029494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.560 4.560 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.662 5.662 14 C 0.061 3.939 15 H 0.022 0.978 16 C 0.063 3.937 17 O -0.398 6.398 18 C 0.055 3.945 19 C -0.113 4.113 20 H 0.080 0.920 21 C -0.102 4.102 22 C -0.147 4.147 23 H 0.029 0.971 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.336 0.664 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 5.662 10.553 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.600 4.600 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.294 5.294 14 C -0.051 4.051 15 H 0.040 0.960 16 C -0.014 4.014 17 O -0.317 6.317 18 C -0.022 4.022 19 C -0.132 4.132 20 H 0.099 0.901 21 C -0.140 4.140 22 C -0.204 4.204 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.707 5.655 10.164 12.956 hybrid contribution 2.298 -0.141 -0.710 2.410 sum -3.408 5.515 9.454 11.463 Atomic orbital electron populations 1.21586 0.96397 0.99964 1.00446 1.21343 0.94376 0.98304 1.00000 1.18942 0.91301 0.91584 0.87053 0.98038 1.22142 0.94188 1.37821 1.05809 0.93370 1.25639 1.01973 0.94841 0.95501 1.69991 1.36453 1.38522 1.09870 0.85781 0.81304 0.78089 0.77463 1.19622 1.20937 1.20269 1.61060 1.55007 1.05267 1.08116 1.22657 0.96282 0.90176 0.95938 0.95954 1.23304 0.95117 0.86283 0.96709 1.89038 1.85264 1.36757 1.20617 1.23618 0.95387 1.01467 0.81689 1.22622 0.98663 0.97786 0.94147 0.90150 1.21351 1.02370 0.96963 0.93318 1.21786 1.02112 1.00540 0.95989 0.95218 0.93668 0.92036 0.92277 0.95280 0.92900 0.84408 0.91237 0.91524 0.87419 0.91250 0.91189 0.92646 0.91824 0.91991 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.85 71.98 0.71 -4.27 16 2 C -0.10 -4.78 5.45 30.59 0.17 -4.61 16 3 C 0.22 10.69 1.85 44.17 0.08 10.77 16 4 H 0.00 0.09 7.30 -2.39 -0.02 0.07 16 5 C -0.56 -30.02 8.32 25.60 0.21 -29.80 16 6 H 0.05 2.55 7.73 -2.91 -0.02 2.53 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -51.79 11.30 21.45 0.24 -51.55 16 9 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.66 -26.17 4.55 -468.12 -2.13 -28.30 16 14 C 0.06 2.25 3.27 45.93 0.15 2.40 16 15 H 0.02 0.97 7.87 -2.39 -0.02 0.95 16 16 C 0.06 2.30 6.59 72.49 0.48 2.78 16 17 O -0.40 -13.38 11.65 -148.98 -1.74 -15.12 16 18 C 0.05 1.42 6.44 72.49 0.47 1.89 16 19 C -0.11 -3.19 3.13 -9.78 -0.03 -3.22 16 20 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 21 C -0.10 -2.53 4.23 30.60 0.13 -2.40 16 22 C -0.15 -2.74 9.78 71.98 0.70 -2.04 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 2.27 7.61 -2.39 -0.02 2.25 16 26 H 0.06 3.17 5.97 -2.39 -0.01 3.16 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.34 13.03 5.96 -89.70 -0.53 12.50 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.07 2.43 8.06 -2.39 -0.02 2.41 16 32 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.07 1.66 7.77 -2.39 -0.02 1.65 16 34 H 0.07 1.83 7.85 -2.39 -0.02 1.81 16 35 H 0.05 1.50 6.51 -2.39 -0.02 1.49 16 36 H 0.06 1.04 7.57 -2.39 -0.02 1.02 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -57.78 296.18 2.40 -55.39 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.48 Total: 21.22 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.51 Total: -26.94 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.89 Total: -79.86 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.74 Total: -15.12 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -57.78 2.40 -55.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699469484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.917 kcal (2) G-P(sol) polarization free energy of solvation -57.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds