Wall clock time and date at job start Mon Mar 30 2020 03:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47002 * 2 1 4 4 H 1.08996 * 110.56947 * 52.31570 * 3 2 1 5 5 C 1.54481 * 110.50928 * 289.63786 * 3 2 1 6 6 O 1.44421 * 104.80441 * 217.37960 * 5 3 2 7 7 C 1.44429 * 105.27588 * 40.51048 * 6 5 3 8 8 C 1.54474 * 104.80182 * 319.49226 * 7 6 5 9 9 H 1.08999 * 110.51176 * 265.19045 * 8 7 6 10 10 N 1.46903 * 110.51372 * 142.62149 * 8 7 6 11 11 C 1.46900 * 111.00036 * 86.44718 * 10 8 7 12 12 H 1.09007 * 109.47162 * 35.00305 * 11 10 8 13 13 C 1.52995 * 109.47628 * 275.00445 * 11 10 8 14 14 C 1.53004 * 109.47273 * 154.99995 * 11 10 8 15 15 C 1.50701 * 109.47211 * 295.00838 * 14 11 10 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 11 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 H 1.09004 * 109.46839 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47138 * 300.00740 * 1 2 3 25 25 H 1.08999 * 109.46826 * 60.00234 * 1 2 3 26 26 H 1.08997 * 109.47138 * 239.99260 * 2 1 3 27 27 H 1.08999 * 109.46826 * 119.99766 * 2 1 3 28 28 H 1.08994 * 110.37065 * 98.54693 * 5 3 2 29 29 H 1.09000 * 110.37257 * 336.21256 * 5 3 2 30 30 H 1.09003 * 110.37586 * 200.65444 * 7 6 5 31 31 H 1.09005 * 110.37140 * 78.31845 * 7 6 5 32 32 H 1.00905 * 110.99858 * 322.50256 * 10 8 7 33 33 H 1.09001 * 109.47261 * 179.97438 * 13 11 10 34 34 H 1.09000 * 109.46927 * 299.99835 * 13 11 10 35 35 H 1.09004 * 109.46944 * 59.99592 * 13 11 10 36 36 H 1.09000 * 109.47211 * 174.99865 * 14 11 10 37 37 H 1.09007 * 109.46376 * 55.00407 * 14 11 10 38 38 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 2.0115 0.8076 5 6 1.7620 2.1149 -1.3627 6 8 2.9178 2.9456 -1.6070 7 6 4.0497 2.1592 -1.1752 8 6 3.5797 1.4724 0.1261 9 1 3.8824 2.0548 0.9963 10 7 4.1158 0.1072 0.2103 11 6 5.4540 0.1036 0.8162 12 1 5.5083 0.8778 1.5817 13 6 6.5032 0.3789 -0.2627 14 6 5.7223 -1.2619 1.4521 15 6 4.7658 -1.4801 2.5961 16 1 4.0396 -0.7205 2.8450 17 6 4.8221 -2.6466 3.3287 18 7 3.9911 -2.8347 4.3306 19 14 6.0787 -3.9602 2.8985 20 1 7.3309 -3.7152 3.6582 21 1 5.5383 -5.2972 3.2528 22 1 6.3658 -3.9124 1.4423 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.8607 2.7253 -1.3077 29 1 1.6640 1.3617 -2.1445 30 1 4.9059 2.8039 -0.9763 31 1 4.3026 1.4128 -1.9283 32 1 4.1289 -0.3327 -0.6977 33 1 7.4961 0.3766 0.1871 34 1 6.4490 -0.3953 -1.0281 35 1 6.3121 1.3517 -0.7156 36 1 6.7466 -1.2949 1.8233 37 1 5.5808 -2.0440 0.7060 38 1 4.0304 -3.6555 4.8459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699875283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:36 Heat of formation + Delta-G solvation = -57.459098 kcal Electronic energy + Delta-G solvation = -16746.298638 eV Core-core repulsion = 14202.237818 eV Total energy + Delta-G solvation = -2544.060820 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.75395 -36.38777 -34.23973 -32.57706 -30.92099 -28.32096 -27.66574 -27.16382 -23.55873 -22.68497 -21.92610 -19.81878 -19.32290 -16.62764 -16.40557 -15.77398 -15.31673 -14.48153 -14.29628 -13.87985 -13.55343 -13.21261 -12.91982 -12.63947 -12.61299 -12.18646 -11.86439 -11.80767 -11.70206 -11.12691 -11.01622 -10.73165 -10.59170 -10.28526 -10.24531 -10.08318 -9.70443 -9.68624 -9.53688 -9.03071 -8.42120 -7.68747 -5.90669 -3.84458 3.35649 3.43771 3.46365 4.04796 4.54785 4.70916 4.87935 4.95014 5.12201 5.26925 5.41372 5.45240 5.56600 5.60040 5.64672 5.68220 5.73032 5.80296 5.85239 6.00129 6.07073 6.11116 6.23332 6.31054 6.43434 6.47283 6.65568 6.77958 6.86179 7.03623 7.14851 7.32150 7.77907 7.89256 8.03015 8.72292 9.20585 9.72646 11.23294 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028388 B = 0.008053 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.106502 B = 3476.315755 C = 4195.538973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 C -0.111 4.111 4 H 0.080 0.920 5 C 0.046 3.954 6 O -0.383 6.383 7 C 0.016 3.984 8 C 0.062 3.938 9 H 0.089 0.911 10 N -0.645 5.645 11 C 0.096 3.904 12 H 0.071 0.929 13 C -0.187 4.187 14 C -0.004 4.004 15 C -0.488 4.488 16 H 0.077 0.923 17 C 0.060 3.940 18 N -0.909 5.909 19 Si 0.874 3.126 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.269 1.269 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.332 0.668 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.011 0.989 37 H 0.016 0.984 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 7.748 -11.237 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.130 4.130 4 H 0.098 0.902 5 C -0.030 4.030 6 O -0.301 6.301 7 C -0.063 4.063 8 C -0.050 4.050 9 H 0.107 0.893 10 N -0.274 5.274 11 C -0.013 4.013 12 H 0.089 0.911 13 C -0.246 4.246 14 C -0.042 4.042 15 C -0.526 4.526 16 H 0.095 0.905 17 C -0.139 4.139 18 N -0.549 5.549 19 Si 0.702 3.298 20 H -0.207 1.207 21 H -0.217 1.217 22 H -0.193 1.193 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.334 7.680 -10.595 13.292 hybrid contribution 1.230 -0.637 -0.806 1.602 sum -1.104 7.043 -11.400 13.446 Atomic orbital electron populations 1.21851 0.97186 1.01320 1.00724 1.21322 0.93603 0.94564 1.04404 1.22544 0.95331 0.98106 0.97038 0.90155 1.23587 0.89348 0.93861 0.96237 1.89071 1.15943 1.39712 1.85357 1.24457 0.90101 0.95385 0.96332 1.23015 0.94557 0.90632 0.96756 0.89284 1.60584 1.24850 1.14610 1.27378 1.21654 0.84825 1.00662 0.94209 0.91101 1.22729 1.01283 1.00249 1.00342 1.19600 0.96322 0.91778 0.96454 1.21019 1.16715 1.03535 1.11329 0.90512 1.25014 0.95709 0.98094 0.95086 1.69913 1.37983 1.26510 1.20511 0.86884 0.82060 0.81710 0.79115 1.20726 1.21697 1.19340 0.92899 0.93047 0.93859 0.92599 0.88417 0.89677 0.92508 0.89609 0.92626 0.84858 0.92446 0.93052 0.93745 0.97042 0.96621 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.79 37.16 0.36 -1.60 16 2 C -0.10 -1.50 4.36 -26.73 -0.12 -1.61 16 3 C -0.11 -1.55 3.11 -89.05 -0.28 -1.83 16 4 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.05 0.59 6.51 37.93 0.25 0.84 16 6 O -0.38 -5.59 11.65 -35.23 -0.41 -6.00 16 7 C 0.02 0.22 5.68 37.93 0.22 0.43 16 8 C 0.06 0.93 3.40 -66.15 -0.22 0.70 16 9 H 0.09 1.42 7.51 -51.93 -0.39 1.03 16 10 N -0.64 -10.95 4.04 -98.10 -0.40 -11.35 16 11 C 0.10 1.76 2.53 -67.71 -0.17 1.59 16 12 H 0.07 1.37 7.47 -51.92 -0.39 0.98 16 13 C -0.19 -2.79 8.96 37.16 0.33 -2.45 16 14 C 0.00 -0.09 3.72 -27.88 -0.10 -0.19 16 15 C -0.49 -13.51 9.39 -34.44 -0.32 -13.83 16 16 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.06 1.75 5.47 -17.82 -0.10 1.65 16 18 N -0.91 -28.07 13.96 55.43 0.77 -27.29 16 19 Si 0.87 21.78 27.46 -169.99 -4.67 17.11 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 H -0.27 -6.43 6.55 56.52 0.37 -6.06 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.48 7.63 -51.93 -0.40 0.08 16 26 H 0.06 0.80 7.56 -51.93 -0.39 0.41 16 27 H 0.10 1.83 7.63 -51.93 -0.40 1.44 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.68 7.74 -51.93 -0.40 0.28 16 30 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 31 H 0.06 0.72 7.61 -51.93 -0.40 0.32 16 32 H 0.33 5.25 7.51 -39.29 -0.29 4.95 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.04 0.58 5.88 -51.93 -0.31 0.27 16 36 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 37 H 0.02 0.36 7.21 -51.93 -0.37 -0.01 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 294.66 15.07 4.44 4.44 Total: -1.00 -29.88 294.66 -7.05 -36.93 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.63 Total: 2.47 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -0.16 Total: -16.31 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.38 Total: -38.64 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.41 Total: -6.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.88 -7.05 -36.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699875283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.528 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds