Wall clock time and date at job start Mon Mar 30 2020 03:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47002 * 2 1 4 4 H 1.08996 * 110.56947 * 52.31570 * 3 2 1 5 5 C 1.54481 * 110.50928 * 289.63786 * 3 2 1 6 6 O 1.44421 * 104.80441 * 217.37960 * 5 3 2 7 7 C 1.44429 * 105.27588 * 40.51048 * 6 5 3 8 8 C 1.54474 * 104.80182 * 319.49226 * 7 6 5 9 9 H 1.08999 * 110.51176 * 265.19045 * 8 7 6 10 10 N 1.46903 * 110.51372 * 142.62149 * 8 7 6 11 11 C 1.46900 * 111.00036 * 86.44718 * 10 8 7 12 12 H 1.09007 * 109.47162 * 35.00305 * 11 10 8 13 13 C 1.52995 * 109.47628 * 275.00445 * 11 10 8 14 14 C 1.53004 * 109.47273 * 154.99995 * 11 10 8 15 15 C 1.50701 * 109.47211 * 295.00838 * 14 11 10 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 11 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 H 1.09004 * 109.46839 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47138 * 300.00740 * 1 2 3 25 25 H 1.08999 * 109.46826 * 60.00234 * 1 2 3 26 26 H 1.08997 * 109.47138 * 239.99260 * 2 1 3 27 27 H 1.08999 * 109.46826 * 119.99766 * 2 1 3 28 28 H 1.08994 * 110.37065 * 98.54693 * 5 3 2 29 29 H 1.09000 * 110.37257 * 336.21256 * 5 3 2 30 30 H 1.09003 * 110.37586 * 200.65444 * 7 6 5 31 31 H 1.09005 * 110.37140 * 78.31845 * 7 6 5 32 32 H 1.00905 * 110.99858 * 322.50256 * 10 8 7 33 33 H 1.09001 * 109.47261 * 179.97438 * 13 11 10 34 34 H 1.09000 * 109.46927 * 299.99835 * 13 11 10 35 35 H 1.09004 * 109.46944 * 59.99592 * 13 11 10 36 36 H 1.09000 * 109.47211 * 174.99865 * 14 11 10 37 37 H 1.09007 * 109.46376 * 55.00407 * 14 11 10 38 38 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 2.0115 0.8076 5 6 1.7620 2.1149 -1.3627 6 8 2.9178 2.9456 -1.6070 7 6 4.0497 2.1592 -1.1752 8 6 3.5797 1.4724 0.1261 9 1 3.8824 2.0548 0.9963 10 7 4.1158 0.1072 0.2103 11 6 5.4540 0.1036 0.8162 12 1 5.5083 0.8778 1.5817 13 6 6.5032 0.3789 -0.2627 14 6 5.7223 -1.2619 1.4521 15 6 4.7658 -1.4801 2.5961 16 1 4.0396 -0.7205 2.8450 17 6 4.8221 -2.6466 3.3287 18 7 3.9911 -2.8347 4.3306 19 14 6.0787 -3.9602 2.8985 20 1 7.3309 -3.7152 3.6582 21 1 5.5383 -5.2972 3.2528 22 1 6.3658 -3.9124 1.4423 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.8607 2.7253 -1.3077 29 1 1.6640 1.3617 -2.1445 30 1 4.9059 2.8039 -0.9763 31 1 4.3026 1.4128 -1.9283 32 1 4.1289 -0.3327 -0.6977 33 1 7.4961 0.3766 0.1871 34 1 6.4490 -0.3953 -1.0281 35 1 6.3121 1.3517 -0.7156 36 1 6.7466 -1.2949 1.8233 37 1 5.5808 -2.0440 0.7060 38 1 4.0304 -3.6555 4.8459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699875283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:36 Heat of formation + Delta-G solvation = -77.347706 kcal Electronic energy + Delta-G solvation = -16747.161073 eV Core-core repulsion = 14202.237818 eV Total energy + Delta-G solvation = -2544.923255 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91095 -37.78970 -35.46405 -34.59357 -32.43282 -29.77315 -29.06457 -28.37455 -24.65747 -24.55801 -23.09235 -21.41128 -20.53073 -18.74229 -17.61735 -16.97670 -16.43993 -16.26098 -15.72320 -15.15963 -14.98856 -14.65920 -14.39195 -13.95769 -13.86653 -13.75763 -13.37246 -13.21308 -12.89560 -12.62301 -12.38694 -12.14198 -12.05247 -11.83477 -11.60027 -11.40257 -11.30388 -11.26095 -11.03311 -10.76389 -10.64946 -8.99542 -8.14550 -6.12709 1.38437 1.40547 1.51285 2.44322 2.94610 3.20090 3.49067 3.73267 3.82904 3.98186 4.13011 4.28781 4.34385 4.42752 4.47758 4.55569 4.58747 4.64124 4.79923 4.86359 4.95893 4.97281 4.98168 5.11382 5.16832 5.21266 5.31486 5.35623 5.49641 5.54430 5.71976 5.79232 5.82742 6.36142 6.52927 6.72716 6.95557 7.47722 9.02825 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028388 B = 0.008053 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.106502 B = 3476.315755 C = 4195.538973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.111 4.111 4 H 0.074 0.926 5 C 0.053 3.947 6 O -0.395 6.395 7 C 0.025 3.975 8 C 0.061 3.939 9 H 0.072 0.928 10 N -0.661 5.661 11 C 0.101 3.899 12 H 0.054 0.946 13 C -0.176 4.176 14 C -0.003 4.003 15 C -0.484 4.484 16 H 0.034 0.966 17 C -0.006 4.006 18 N -0.960 5.960 19 Si 0.945 3.055 20 H -0.272 1.272 21 H -0.292 1.292 22 H -0.248 1.248 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.341 0.659 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 8.018 -13.754 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.130 4.130 4 H 0.092 0.908 5 C -0.024 4.024 6 O -0.314 6.314 7 C -0.054 4.054 8 C -0.050 4.050 9 H 0.090 0.910 10 N -0.292 5.292 11 C -0.009 4.009 12 H 0.072 0.928 13 C -0.234 4.234 14 C -0.040 4.040 15 C -0.522 4.522 16 H 0.052 0.948 17 C -0.200 4.200 18 N -0.603 5.603 19 Si 0.770 3.230 20 H -0.198 1.198 21 H -0.219 1.219 22 H -0.171 1.171 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.161 0.839 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.352 7.970 -13.136 15.425 hybrid contribution 0.842 -0.657 0.031 1.068 sum -0.510 7.313 -13.105 15.016 Atomic orbital electron populations 1.21815 0.95511 1.01559 1.01807 1.21152 0.95059 0.94638 1.02199 1.22521 0.94640 0.97620 0.98223 0.90799 1.23632 0.89490 0.94155 0.95101 1.89065 1.16591 1.40393 1.85325 1.24378 0.90131 0.95566 0.95286 1.22960 0.95208 0.89516 0.97319 0.90997 1.60437 1.24402 1.16292 1.28046 1.21412 0.86913 0.97389 0.95159 0.92813 1.22574 0.99909 1.01806 0.99151 1.19570 0.95000 0.94625 0.94835 1.21287 1.16237 1.02189 1.12506 0.94802 1.25951 0.98089 1.00931 0.95068 1.70091 1.40506 1.27411 1.22271 0.85746 0.79221 0.78085 0.79982 1.19791 1.21871 1.17137 0.93133 0.93427 0.91260 0.92007 0.93300 0.87863 0.91225 0.88628 0.91353 0.83947 0.91944 0.92029 0.91553 0.96521 0.96420 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.79 71.98 0.70 -3.01 16 2 C -0.09 -2.74 4.36 30.60 0.13 -2.61 16 3 C -0.11 -3.03 3.11 -9.78 -0.03 -3.06 16 4 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 5 C 0.05 1.20 6.51 72.49 0.47 1.67 16 6 O -0.40 -10.50 11.65 -148.98 -1.74 -12.24 16 7 C 0.02 0.61 5.68 72.48 0.41 1.02 16 8 C 0.06 1.80 3.40 45.93 0.16 1.96 16 9 H 0.07 2.34 7.51 -2.39 -0.02 2.32 16 10 N -0.66 -22.27 4.04 -464.29 -1.88 -24.15 16 11 C 0.10 3.64 2.53 44.92 0.11 3.75 16 12 H 0.05 2.10 7.47 -2.38 -0.02 2.08 16 13 C -0.18 -4.72 8.96 71.98 0.64 -4.08 16 14 C 0.00 -0.11 3.72 29.85 0.11 0.00 16 15 C -0.48 -27.55 9.39 25.60 0.24 -27.31 16 16 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 17 C -0.01 -0.35 5.47 84.65 0.46 0.11 16 18 N -0.96 -61.39 13.96 21.45 0.30 -61.10 16 19 Si 0.94 44.98 27.46 68.60 1.88 46.86 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.25 -10.86 6.55 99.48 0.65 -10.21 16 23 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.36 7.63 -2.39 -0.02 1.34 16 26 H 0.06 1.72 7.56 -2.39 -0.02 1.70 16 27 H 0.05 1.93 7.63 -2.39 -0.02 1.91 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.44 7.74 -2.39 -0.02 1.42 16 30 H 0.10 2.16 7.40 -2.39 -0.02 2.14 16 31 H 0.07 1.53 7.61 -2.38 -0.02 1.51 16 32 H 0.34 10.26 7.51 -89.69 -0.67 9.59 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 35 H 0.07 1.50 5.88 -2.38 -0.01 1.49 16 36 H 0.02 0.74 7.56 -2.39 -0.02 0.72 16 37 H 0.02 0.79 7.21 -2.38 -0.02 0.77 16 38 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -66.07 294.66 2.28 -63.79 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.29 Total: 18.38 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 3.42 Total: -31.56 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -1.58 Total: -85.24 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.74 Total: -12.24 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -66.07 2.28 -63.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699875283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.558 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds