Wall clock time and date at job start Mon Mar 30 2020 03:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47191 * 2 1 4 4 C 1.42903 * 113.99857 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.78513 * 328.20588 * 4 3 2 6 6 C 1.54592 * 110.71919 * 91.45742 * 4 3 2 7 7 C 1.53998 * 105.13820 * 140.31457 * 6 4 3 8 8 N 1.47905 * 107.05802 * 1.22282 * 7 6 4 9 9 C 1.46894 * 110.99780 * 214.15651 * 8 7 6 10 10 H 1.09000 * 109.47321 * 200.73943 * 9 8 7 11 11 C 1.50698 * 109.47558 * 320.73584 * 9 8 7 12 12 H 1.08003 * 119.99915 * 5.92799 * 11 9 8 13 13 C 1.37875 * 120.00255 * 185.92352 * 11 9 8 14 14 N 1.31510 * 120.00204 * 5.88801 * 13 11 9 15 15 Si 1.86808 * 119.99989 * 185.89563 * 13 11 9 16 16 H 1.48505 * 109.46851 * 269.99678 * 15 13 11 17 17 H 1.48499 * 109.47012 * 149.99928 * 15 13 11 18 18 H 1.48491 * 109.47103 * 29.99591 * 15 13 11 19 19 C 1.53006 * 109.47245 * 80.74179 * 9 8 7 20 20 C 1.53005 * 109.46749 * 297.71574 * 19 9 8 21 21 C 1.48527 * 105.81748 * 334.66963 * 8 7 6 22 22 H 1.09001 * 109.46949 * 299.99297 * 1 2 3 23 23 H 1.08994 * 109.47603 * 59.99879 * 1 2 3 24 24 H 1.09004 * 109.47485 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46734 * 240.00202 * 2 1 3 26 26 H 1.08999 * 109.47329 * 120.00513 * 2 1 3 27 27 H 1.08998 * 110.31276 * 21.40242 * 6 4 3 28 28 H 1.09000 * 110.31118 * 259.22849 * 6 4 3 29 29 H 1.09005 * 109.91882 * 241.86770 * 7 6 4 30 30 H 1.08997 * 110.08113 * 120.66879 * 7 6 4 31 31 H 0.96999 * 119.99751 * 355.26655 * 14 13 11 32 32 H 1.08997 * 109.47152 * 57.72027 * 19 9 8 33 33 H 1.09002 * 109.46984 * 177.72362 * 19 9 8 34 34 H 1.08997 * 109.46758 * 188.05508 * 20 19 9 35 35 H 1.08993 * 109.47032 * 308.05927 * 20 19 9 36 36 H 1.09002 * 109.46392 * 68.05789 * 20 19 9 37 37 H 1.09001 * 110.66591 * 157.63888 * 21 8 7 38 38 H 1.09003 * 110.66929 * 280.77127 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8846 0.6272 0.5378 6 6 3.9738 1.5397 -1.4447 7 6 5.1074 2.5806 -1.3916 8 7 5.2138 3.0351 0.0118 9 6 5.5924 4.4528 0.0787 10 1 6.0166 4.6698 1.0591 11 6 6.6145 4.7508 -0.9878 12 1 6.8787 3.9921 -1.7096 13 6 7.2124 5.9920 -1.0422 14 7 6.9788 6.8764 -0.0973 15 14 8.3541 6.4175 -2.4582 16 1 9.7453 6.0380 -2.1035 17 1 8.2916 7.8774 -2.7229 18 1 7.9332 5.6755 -3.6736 19 6 4.3536 5.3227 -0.1447 20 6 3.7913 5.0595 -1.5432 21 6 3.8735 2.8132 0.6120 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.1893 1.8691 -2.1260 28 1 4.3642 0.5708 -1.7561 29 1 4.8671 3.4247 -2.0381 30 1 6.0470 2.1272 -1.7074 31 1 6.3337 6.6817 0.6004 32 1 3.5986 5.0784 0.6024 33 1 4.6269 6.3740 -0.0550 34 1 2.9995 5.7773 -1.7573 35 1 4.5870 5.1656 -2.2805 36 1 3.3870 4.0483 -1.5877 37 1 3.9452 2.7398 1.6971 38 1 3.1863 3.6087 0.3237 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701709630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:03 Heat of formation + Delta-G solvation = -32.469657 kcal Electronic energy + Delta-G solvation = -16990.420771 eV Core-core repulsion = 14447.443575 eV Total energy + Delta-G solvation = -2542.977197 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42581 -37.32869 -33.96114 -31.56639 -30.84418 -29.27600 -28.04071 -25.37794 -23.84153 -22.79340 -21.17237 -20.26877 -19.16823 -17.13771 -16.41060 -15.47307 -15.18925 -14.87127 -13.99893 -13.74846 -13.59431 -13.08194 -12.92636 -12.59429 -12.37108 -11.74185 -11.67213 -11.27682 -11.13275 -11.10325 -10.90864 -10.77936 -10.62511 -10.41569 -10.13398 -10.11411 -9.79557 -9.64174 -9.30731 -8.51272 -8.22926 -7.23383 -6.31413 -4.03791 3.43655 3.46282 3.61676 3.76440 4.52535 4.94121 5.03735 5.07959 5.24532 5.27262 5.36581 5.38462 5.44929 5.57813 5.77986 5.84188 6.00863 6.09044 6.12983 6.14874 6.19789 6.29825 6.37293 6.42161 6.68985 6.71603 6.77956 7.05396 7.15299 7.29249 7.32425 7.48310 7.69112 8.08904 8.36593 8.54493 8.89252 9.65859 11.03989 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052322 B = 0.006685 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.023098 B = 4187.539993 C = 4327.448148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.382 6.382 4 C 0.085 3.915 5 H 0.067 0.933 6 C -0.157 4.157 7 C 0.034 3.966 8 N -0.503 5.503 9 C 0.192 3.808 10 H 0.035 0.965 11 C -0.588 4.588 12 H 0.059 0.941 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 1.068 2.932 16 H -0.288 1.288 17 H -0.285 1.285 18 H -0.289 1.289 19 C -0.155 4.155 20 C -0.144 4.144 21 C 0.024 3.976 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.271 0.729 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 -10.827 -1.435 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.301 6.301 4 C 0.026 3.974 5 H 0.085 0.915 6 C -0.195 4.195 7 C -0.093 4.093 8 N -0.227 5.227 9 C 0.084 3.916 10 H 0.053 0.947 11 C -0.627 4.627 12 H 0.077 0.923 13 C -0.182 4.182 14 N -0.549 5.549 15 Si 0.896 3.104 16 H -0.215 1.215 17 H -0.211 1.211 18 H -0.215 1.215 19 C -0.194 4.194 20 C -0.201 4.201 21 C -0.104 4.104 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.054 -9.767 -1.739 12.779 hybrid contribution -1.425 -0.983 0.208 1.744 sum -9.480 -10.750 -1.532 14.414 Atomic orbital electron populations 1.21737 0.94128 1.01848 1.03049 1.22424 0.95229 0.84542 0.99758 1.87909 1.21488 1.25683 1.94980 1.23073 0.79645 0.98820 0.95823 0.91494 1.23005 0.99280 1.00073 0.97151 1.23047 0.96317 0.97232 0.92724 1.65023 1.22129 1.21959 1.13635 1.19596 0.92214 0.81679 0.98070 0.94744 1.21993 1.25057 1.00530 1.15083 0.92320 1.25693 0.98860 0.93010 1.00674 1.70754 1.33383 1.38205 1.12568 0.83561 0.75844 0.76002 0.74964 1.21506 1.21125 1.21507 1.22268 0.98786 1.02862 0.95496 1.21970 0.99700 0.99189 0.99195 1.23418 0.92833 0.95044 0.99122 0.91942 0.91963 0.91441 0.93707 0.93683 0.91291 0.92092 0.90112 0.91735 0.91676 0.94644 0.91520 0.95492 0.90975 0.93429 0.91052 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 37.15 0.38 -1.10 16 2 C 0.06 0.69 6.53 37.15 0.24 0.93 16 3 O -0.38 -6.02 10.08 -35.23 -0.36 -6.37 16 4 C 0.08 1.40 3.51 -24.87 -0.09 1.31 16 5 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 6 C -0.16 -2.60 6.20 -25.37 -0.16 -2.76 16 7 C 0.03 0.69 4.26 -2.75 -0.01 0.68 16 8 N -0.50 -11.00 5.46 -223.88 -1.22 -12.23 16 9 C 0.19 4.77 2.42 -68.87 -0.17 4.60 16 10 H 0.03 0.96 7.63 -51.93 -0.40 0.56 16 11 C -0.59 -15.80 6.31 -34.44 -0.22 -16.01 16 12 H 0.06 1.58 6.02 -52.48 -0.32 1.26 16 13 C 0.02 0.61 5.27 -17.82 -0.09 0.52 16 14 N -0.91 -26.81 13.17 55.43 0.73 -26.08 16 15 Si 1.07 24.84 29.91 -169.99 -5.08 19.76 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.15 -3.57 4.82 -26.73 -0.13 -3.70 16 20 C -0.14 -3.05 7.88 37.16 0.29 -2.76 16 21 C 0.02 0.46 5.34 -1.90 -0.01 0.45 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.50 8.11 -51.93 -0.42 0.07 16 27 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.72 3.53 -51.93 -0.18 1.54 16 30 H 0.06 1.33 7.67 -51.93 -0.40 0.93 16 31 H 0.27 7.94 5.70 -40.82 -0.23 7.71 16 32 H 0.04 0.76 5.91 -51.93 -0.31 0.45 16 33 H 0.07 1.69 6.20 -51.93 -0.32 1.36 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.65 6.14 -51.93 -0.32 1.33 16 36 H 0.05 0.95 4.32 -51.93 -0.22 0.72 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.40 4.23 -51.93 -0.22 1.18 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -28.86 280.91 -7.56 -36.42 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.91 Total: 2.10 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 0.04 Total: -17.84 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.49 Total: -38.30 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.36 Total: -6.37 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.76 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.86 -7.56 -36.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701709630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.955 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds