Wall clock time and date at job start Mon Mar 30 2020 03:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47191 * 2 1 4 4 C 1.42903 * 113.99857 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.78513 * 328.20588 * 4 3 2 6 6 C 1.54592 * 110.71919 * 91.45742 * 4 3 2 7 7 C 1.53998 * 105.13820 * 140.31457 * 6 4 3 8 8 N 1.47905 * 107.05802 * 1.22282 * 7 6 4 9 9 C 1.46894 * 110.99780 * 214.15651 * 8 7 6 10 10 H 1.09000 * 109.47321 * 200.73943 * 9 8 7 11 11 C 1.50698 * 109.47558 * 320.73584 * 9 8 7 12 12 H 1.08003 * 119.99915 * 5.92799 * 11 9 8 13 13 C 1.37875 * 120.00255 * 185.92352 * 11 9 8 14 14 N 1.31510 * 120.00204 * 5.88801 * 13 11 9 15 15 Si 1.86808 * 119.99989 * 185.89563 * 13 11 9 16 16 H 1.48505 * 109.46851 * 269.99678 * 15 13 11 17 17 H 1.48499 * 109.47012 * 149.99928 * 15 13 11 18 18 H 1.48491 * 109.47103 * 29.99591 * 15 13 11 19 19 C 1.53006 * 109.47245 * 80.74179 * 9 8 7 20 20 C 1.53005 * 109.46749 * 297.71574 * 19 9 8 21 21 C 1.48527 * 105.81748 * 334.66963 * 8 7 6 22 22 H 1.09001 * 109.46949 * 299.99297 * 1 2 3 23 23 H 1.08994 * 109.47603 * 59.99879 * 1 2 3 24 24 H 1.09004 * 109.47485 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46734 * 240.00202 * 2 1 3 26 26 H 1.08999 * 109.47329 * 120.00513 * 2 1 3 27 27 H 1.08998 * 110.31276 * 21.40242 * 6 4 3 28 28 H 1.09000 * 110.31118 * 259.22849 * 6 4 3 29 29 H 1.09005 * 109.91882 * 241.86770 * 7 6 4 30 30 H 1.08997 * 110.08113 * 120.66879 * 7 6 4 31 31 H 0.96999 * 119.99751 * 355.26655 * 14 13 11 32 32 H 1.08997 * 109.47152 * 57.72027 * 19 9 8 33 33 H 1.09002 * 109.46984 * 177.72362 * 19 9 8 34 34 H 1.08997 * 109.46758 * 188.05508 * 20 19 9 35 35 H 1.08993 * 109.47032 * 308.05927 * 20 19 9 36 36 H 1.09002 * 109.46392 * 68.05789 * 20 19 9 37 37 H 1.09001 * 110.66591 * 157.63888 * 21 8 7 38 38 H 1.09003 * 110.66929 * 280.77127 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8846 0.6272 0.5378 6 6 3.9738 1.5397 -1.4447 7 6 5.1074 2.5806 -1.3916 8 7 5.2138 3.0351 0.0118 9 6 5.5924 4.4528 0.0787 10 1 6.0166 4.6698 1.0591 11 6 6.6145 4.7508 -0.9878 12 1 6.8787 3.9921 -1.7096 13 6 7.2124 5.9920 -1.0422 14 7 6.9788 6.8764 -0.0973 15 14 8.3541 6.4175 -2.4582 16 1 9.7453 6.0380 -2.1035 17 1 8.2916 7.8774 -2.7229 18 1 7.9332 5.6755 -3.6736 19 6 4.3536 5.3227 -0.1447 20 6 3.7913 5.0595 -1.5432 21 6 3.8735 2.8132 0.6120 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.1893 1.8691 -2.1260 28 1 4.3642 0.5708 -1.7561 29 1 4.8671 3.4247 -2.0381 30 1 6.0470 2.1272 -1.7074 31 1 6.3337 6.6817 0.6004 32 1 3.5986 5.0784 0.6024 33 1 4.6269 6.3740 -0.0550 34 1 2.9995 5.7773 -1.7573 35 1 4.5870 5.1656 -2.2805 36 1 3.3870 4.0483 -1.5877 37 1 3.9452 2.7398 1.6971 38 1 3.1863 3.6087 0.3237 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701709630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:02 Heat of formation + Delta-G solvation = -51.730189 kcal Electronic energy + Delta-G solvation = -16991.255971 eV Core-core repulsion = 14447.443575 eV Total energy + Delta-G solvation = -2543.812396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99519 -38.65582 -35.72108 -33.26959 -32.06463 -30.88009 -29.59756 -27.20749 -25.74871 -23.70425 -22.79298 -21.75957 -20.99759 -18.79040 -17.95571 -16.95443 -16.49703 -16.22657 -15.62453 -15.56043 -15.40724 -14.48233 -14.37326 -13.83062 -13.62163 -13.26403 -13.16142 -12.91984 -12.74972 -12.61969 -12.33914 -12.25245 -12.18514 -11.97481 -11.92349 -11.81422 -11.54821 -11.24296 -10.59227 -10.48270 -10.28745 -8.98901 -8.50881 -6.23891 1.54757 1.62491 1.79234 2.55608 2.64420 3.24714 3.49456 3.72144 3.83093 4.07074 4.19208 4.28722 4.31557 4.34257 4.42224 4.50050 4.51585 4.61874 4.75158 4.77317 4.92505 4.96017 4.97465 5.03591 5.06495 5.13836 5.27899 5.28462 5.32415 5.45310 5.50876 5.79895 6.10880 6.28612 6.42932 6.51546 6.74844 7.53756 8.84166 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052322 B = 0.006685 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.023098 B = 4187.539993 C = 4327.448148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.398 6.398 4 C 0.097 3.903 5 H 0.080 0.920 6 C -0.145 4.145 7 C 0.033 3.967 8 N -0.515 5.515 9 C 0.194 3.806 10 H -0.004 1.004 11 C -0.588 4.588 12 H 0.057 0.943 13 C -0.026 4.026 14 N -0.940 5.940 15 Si 1.111 2.889 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.269 1.269 19 C -0.146 4.146 20 C -0.132 4.132 21 C 0.021 3.979 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.260 0.740 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 -12.690 -2.540 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.317 6.317 4 C 0.038 3.962 5 H 0.098 0.902 6 C -0.184 4.184 7 C -0.095 4.095 8 N -0.240 5.240 9 C 0.086 3.914 10 H 0.013 0.987 11 C -0.626 4.626 12 H 0.075 0.925 13 C -0.225 4.225 14 N -0.578 5.578 15 Si 0.934 3.066 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.185 4.185 20 C -0.189 4.189 21 C -0.107 4.107 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.082 -11.663 -2.842 15.053 hybrid contribution -1.167 -0.485 0.614 1.406 sum -10.250 -12.149 -2.228 16.050 Atomic orbital electron populations 1.21759 0.92671 1.03439 1.02600 1.22726 0.96442 0.82837 1.00840 1.87889 1.20517 1.28275 1.95051 1.22844 0.80602 0.97324 0.95419 0.90160 1.22923 0.97950 1.00028 0.97467 1.23016 0.97485 0.97768 0.91183 1.64878 1.24221 1.19706 1.15182 1.19363 0.92589 0.84038 0.95413 0.98663 1.22237 1.25026 1.00282 1.15038 0.92482 1.26996 1.00184 0.93263 1.02022 1.70863 1.34357 1.39096 1.13468 0.83005 0.74661 0.75848 0.73117 1.20517 1.21330 1.19388 1.22122 0.98468 1.00627 0.97323 1.21840 0.99423 1.00555 0.97067 1.23428 0.91223 0.96740 0.99319 0.92406 0.92408 0.88848 0.92578 0.92600 0.90710 0.89587 0.91513 0.92560 0.92967 0.93259 0.94308 0.93782 0.92837 0.91996 0.90924 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.05 0.98 6.53 71.98 0.47 1.45 16 3 O -0.40 -11.46 10.08 -148.98 -1.50 -12.96 16 4 C 0.10 2.95 3.51 31.80 0.11 3.06 16 5 H 0.08 2.25 7.89 -2.39 -0.02 2.23 16 6 C -0.15 -4.41 6.20 31.47 0.20 -4.22 16 7 C 0.03 1.29 4.26 86.45 0.37 1.66 16 8 N -0.52 -22.44 5.46 -862.23 -4.71 -27.15 16 9 C 0.19 9.87 2.42 44.17 0.11 9.98 16 10 H 0.00 -0.26 7.63 -2.39 -0.02 -0.27 16 11 C -0.59 -31.99 6.31 25.60 0.16 -31.83 16 12 H 0.06 3.07 6.02 -2.91 -0.02 3.06 16 13 C -0.03 -1.46 5.27 84.65 0.45 -1.01 16 14 N -0.94 -56.73 13.17 21.45 0.28 -56.44 16 15 Si 1.11 49.98 29.91 68.60 2.05 52.03 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 C -0.15 -6.84 4.82 30.60 0.15 -6.69 16 20 C -0.13 -5.52 7.88 71.98 0.57 -4.95 16 21 C 0.02 0.78 5.34 86.65 0.46 1.24 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.04 8.11 -2.39 -0.02 1.02 16 27 H 0.07 2.21 7.82 -2.39 -0.02 2.19 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.79 3.53 -2.38 -0.01 2.79 16 30 H 0.06 2.25 7.67 -2.39 -0.02 2.24 16 31 H 0.26 15.87 5.70 -92.71 -0.53 15.34 16 32 H 0.05 2.14 5.91 -2.39 -0.01 2.12 16 33 H 0.04 2.02 6.20 -2.39 -0.01 2.00 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 2.43 6.14 -2.39 -0.01 2.41 16 36 H 0.06 2.39 4.32 -2.39 -0.01 2.38 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.06 2.37 4.23 -2.39 -0.01 2.36 16 Total: -1.00 -62.42 280.91 1.17 -61.24 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.27 Total: 16.33 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.78 Total: -33.05 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -4.43 Total: -83.60 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.50 Total: -12.96 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -62.42 1.17 -61.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701709630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.514 kcal (2) G-P(sol) polarization free energy of solvation -62.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds