Wall clock time and date at job start Mon Mar 30 2020 03:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47668 * 2 1 4 4 C 1.42894 * 114.00022 * 179.97438 * 3 2 1 5 5 H 1.08992 * 110.65002 * 328.30268 * 4 3 2 6 6 C 1.54601 * 110.72137 * 91.45575 * 4 3 2 7 7 C 1.53998 * 105.13875 * 140.31452 * 6 4 3 8 8 N 1.47906 * 107.05864 * 1.22110 * 7 6 4 9 9 C 1.46897 * 111.00034 * 214.15629 * 8 7 6 10 10 H 1.08997 * 109.47111 * 178.05551 * 9 8 7 11 11 C 1.50700 * 109.46850 * 58.05263 * 9 8 7 12 12 H 1.07996 * 120.00456 * 354.41380 * 11 9 8 13 13 C 1.37882 * 119.99653 * 174.42012 * 11 9 8 14 14 N 1.31513 * 119.99686 * 180.02562 * 13 11 9 15 15 Si 1.86793 * 120.00194 * 359.97438 * 13 11 9 16 16 H 1.48500 * 109.47077 * 90.00049 * 15 13 11 17 17 H 1.48499 * 109.47284 * 210.00303 * 15 13 11 18 18 H 1.48502 * 109.47137 * 330.00016 * 15 13 11 19 19 C 1.53003 * 109.47373 * 298.05340 * 9 8 7 20 20 C 1.52999 * 109.46988 * 294.83146 * 19 9 8 21 21 C 1.48530 * 105.81890 * 334.67417 * 8 7 6 22 22 H 1.08995 * 109.47285 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47236 * 300.00502 * 1 2 3 24 24 H 1.09007 * 109.46813 * 60.00008 * 1 2 3 25 25 H 1.08999 * 109.47236 * 239.99498 * 2 1 3 26 26 H 1.09007 * 109.46813 * 119.99992 * 2 1 3 27 27 H 1.08989 * 110.30976 * 21.39675 * 6 4 3 28 28 H 1.09000 * 110.30531 * 259.22282 * 6 4 3 29 29 H 1.08995 * 109.91388 * 241.86688 * 7 6 4 30 30 H 1.09002 * 110.07956 * 120.66660 * 7 6 4 31 31 H 0.97002 * 120.00004 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.47121 * 54.82503 * 19 9 8 33 33 H 1.08994 * 109.47130 * 174.82583 * 19 9 8 34 34 H 1.08999 * 109.47463 * 55.11952 * 20 19 9 35 35 H 1.08994 * 109.47407 * 175.12906 * 20 19 9 36 36 H 1.09006 * 109.46772 * 295.12823 * 20 19 9 37 37 H 1.08999 * 110.66577 * 157.64379 * 21 8 7 38 38 H 1.09007 * 110.66419 * 280.76717 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4599 0.0006 5 1 3.8823 0.6253 0.5368 6 6 3.9740 1.5395 -1.4447 7 6 5.1077 2.5804 -1.3917 8 7 5.2140 3.0349 0.0118 9 6 5.5927 4.4527 0.0787 10 1 5.6302 4.7700 1.1208 11 6 4.5741 5.2801 -0.6621 12 1 3.7804 4.7952 -1.2110 13 6 4.6555 6.6564 -0.6393 14 7 3.7663 7.3785 -1.2854 15 14 6.0280 7.4951 0.3104 16 1 7.2001 7.6885 -0.5806 17 1 5.5559 8.8149 0.8008 18 1 6.4192 6.6487 1.4662 19 6 6.9687 4.6439 -0.5624 20 6 8.0238 3.9074 0.2655 21 6 3.8736 2.8130 0.6119 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 3.1896 1.8688 -2.1260 28 1 4.3644 0.5706 -1.7560 29 1 4.8673 3.4243 -2.0382 30 1 6.0472 2.1268 -1.7074 31 1 3.8238 8.3466 -1.2696 32 1 6.9566 4.2422 -1.5756 33 1 7.2095 5.7064 -0.5957 34 1 7.7372 2.8612 0.3715 35 1 8.9890 3.9707 -0.2368 36 1 8.0967 4.3658 1.2518 37 1 3.9454 2.7398 1.6971 38 1 3.1865 3.6087 0.3236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701709632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:04 Heat of formation + Delta-G solvation = -46.643354 kcal Electronic energy + Delta-G solvation = -16760.440899 eV Core-core repulsion = 14216.849085 eV Total energy + Delta-G solvation = -2543.591814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.94773 -37.02332 -33.87123 -31.96143 -31.02983 -29.42296 -27.57339 -26.41224 -22.77589 -22.71074 -21.36385 -20.36644 -18.98987 -17.05380 -16.48443 -15.59567 -15.14955 -14.57769 -14.23744 -13.80129 -13.05126 -12.93038 -12.72484 -12.53966 -12.44165 -12.24112 -11.75968 -11.63115 -11.29492 -11.07515 -10.93563 -10.84545 -10.72347 -10.43582 -10.15255 -9.87519 -9.70515 -9.57981 -9.27119 -9.15278 -8.56302 -7.26638 -6.10488 -4.11026 3.26768 3.37273 3.39583 3.89873 4.38902 5.04786 5.12957 5.16998 5.21051 5.34366 5.36274 5.46039 5.52049 5.67380 5.86808 5.95930 6.00060 6.05826 6.14991 6.20036 6.23987 6.33305 6.52982 6.58672 6.68984 6.71144 6.82079 6.85426 6.93789 7.12333 7.22852 7.55977 7.59948 7.96213 8.09529 8.44735 8.92023 9.52334 11.02040 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.007925 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.881472 B = 3532.193994 C = 4066.596283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.378 6.378 4 C 0.085 3.915 5 H 0.064 0.936 6 C -0.150 4.150 7 C 0.037 3.963 8 N -0.506 5.506 9 C 0.170 3.830 10 H 0.042 0.958 11 C -0.544 4.544 12 H 0.080 0.920 13 C 0.075 3.925 14 N -0.897 5.897 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.262 1.262 19 C -0.119 4.119 20 C -0.146 4.146 21 C 0.045 3.955 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -12.555 2.330 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.297 6.297 4 C 0.026 3.974 5 H 0.082 0.918 6 C -0.189 4.189 7 C -0.091 4.091 8 N -0.230 5.230 9 C 0.062 3.938 10 H 0.060 0.940 11 C -0.583 4.583 12 H 0.097 0.903 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.710 3.290 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.187 1.187 19 C -0.157 4.157 20 C -0.203 4.203 21 C -0.084 4.084 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.465 -12.493 2.570 12.763 hybrid contribution 0.264 0.899 -0.116 0.944 sum 0.730 -11.594 2.454 11.873 Atomic orbital electron populations 1.21736 0.94172 1.01693 1.03205 1.22414 0.95282 0.84704 0.99532 1.87966 1.21405 1.25371 1.94909 1.23076 0.79814 0.98831 0.95638 0.91751 1.22889 0.99131 0.99278 0.97580 1.22718 0.96351 0.97387 0.92643 1.65050 1.23965 1.20759 1.13264 1.19872 0.92383 0.84765 0.96801 0.94044 1.21604 1.12519 0.91505 1.32649 0.90258 1.24967 0.95619 0.97464 0.94728 1.69922 1.35311 1.05936 1.42245 0.86909 0.82313 0.78655 0.81119 1.20364 1.22245 1.18664 1.21861 0.95823 0.98656 0.99316 1.21769 0.97619 1.01596 0.99345 1.23058 0.91943 0.94988 0.98380 0.91571 0.91900 0.91873 0.93845 0.93824 0.91016 0.92325 0.91093 0.92093 0.92668 0.92463 0.93322 0.91899 0.94745 0.94052 0.91162 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.06 0.74 6.53 37.16 0.24 0.98 16 3 O -0.38 -6.49 10.08 -35.23 -0.36 -6.84 16 4 C 0.08 1.45 3.51 -24.87 -0.09 1.36 16 5 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 6 C -0.15 -2.55 6.69 -25.37 -0.17 -2.72 16 7 C 0.04 0.72 5.00 -2.75 -0.01 0.71 16 8 N -0.51 -10.45 4.69 -223.88 -1.05 -11.50 16 9 C 0.17 3.97 1.41 -68.86 -0.10 3.88 16 10 H 0.04 1.03 6.80 -51.93 -0.35 0.67 16 11 C -0.54 -14.87 6.84 -34.44 -0.24 -15.10 16 12 H 0.08 2.38 6.30 -52.49 -0.33 2.05 16 13 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 14 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 15 Si 0.88 21.74 24.69 -169.99 -4.20 17.54 16 16 H -0.28 -6.68 6.86 56.52 0.39 -6.30 16 17 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 18 H -0.26 -6.22 6.38 56.52 0.36 -5.86 16 19 C -0.12 -2.56 4.88 -26.73 -0.13 -2.69 16 20 C -0.15 -2.66 9.86 37.16 0.37 -2.29 16 21 C 0.04 0.89 6.07 -1.90 -0.01 0.88 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.50 8.11 -51.92 -0.42 0.08 16 27 H 0.07 1.28 8.07 -51.94 -0.42 0.86 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.58 5.95 -51.93 -0.31 1.27 16 30 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.06 1.21 6.99 -51.93 -0.36 0.85 16 33 H 0.05 1.12 4.02 -51.93 -0.21 0.91 16 34 H 0.06 1.11 7.63 -51.93 -0.40 0.71 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.83 6.32 -51.93 -0.33 1.50 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -29.43 289.90 -6.84 -36.27 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.53 Total: 0.87 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 0.15 Total: -14.23 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.28 Total: -37.97 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.36 Total: -6.84 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.20 Total: 17.54 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.43 -6.84 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701709632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.376 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds