Wall clock time and date at job start Mon Mar 30 2020 03:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47668 * 2 1 4 4 C 1.42894 * 114.00022 * 179.97438 * 3 2 1 5 5 H 1.08992 * 110.65002 * 328.30268 * 4 3 2 6 6 C 1.54601 * 110.72137 * 91.45575 * 4 3 2 7 7 C 1.53998 * 105.13875 * 140.31452 * 6 4 3 8 8 N 1.47906 * 107.05864 * 1.22110 * 7 6 4 9 9 C 1.46897 * 111.00034 * 214.15629 * 8 7 6 10 10 H 1.08997 * 109.47111 * 178.05551 * 9 8 7 11 11 C 1.50700 * 109.46850 * 58.05263 * 9 8 7 12 12 H 1.07996 * 120.00456 * 354.41380 * 11 9 8 13 13 C 1.37882 * 119.99653 * 174.42012 * 11 9 8 14 14 N 1.31513 * 119.99686 * 180.02562 * 13 11 9 15 15 Si 1.86793 * 120.00194 * 359.97438 * 13 11 9 16 16 H 1.48500 * 109.47077 * 90.00049 * 15 13 11 17 17 H 1.48499 * 109.47284 * 210.00303 * 15 13 11 18 18 H 1.48502 * 109.47137 * 330.00016 * 15 13 11 19 19 C 1.53003 * 109.47373 * 298.05340 * 9 8 7 20 20 C 1.52999 * 109.46988 * 294.83146 * 19 9 8 21 21 C 1.48530 * 105.81890 * 334.67417 * 8 7 6 22 22 H 1.08995 * 109.47285 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47236 * 300.00502 * 1 2 3 24 24 H 1.09007 * 109.46813 * 60.00008 * 1 2 3 25 25 H 1.08999 * 109.47236 * 239.99498 * 2 1 3 26 26 H 1.09007 * 109.46813 * 119.99992 * 2 1 3 27 27 H 1.08989 * 110.30976 * 21.39675 * 6 4 3 28 28 H 1.09000 * 110.30531 * 259.22282 * 6 4 3 29 29 H 1.08995 * 109.91388 * 241.86688 * 7 6 4 30 30 H 1.09002 * 110.07956 * 120.66660 * 7 6 4 31 31 H 0.97002 * 120.00004 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.47121 * 54.82503 * 19 9 8 33 33 H 1.08994 * 109.47130 * 174.82583 * 19 9 8 34 34 H 1.08999 * 109.47463 * 55.11952 * 20 19 9 35 35 H 1.08994 * 109.47407 * 175.12906 * 20 19 9 36 36 H 1.09006 * 109.46772 * 295.12823 * 20 19 9 37 37 H 1.08999 * 110.66577 * 157.64379 * 21 8 7 38 38 H 1.09007 * 110.66419 * 280.76717 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4599 0.0006 5 1 3.8823 0.6253 0.5368 6 6 3.9740 1.5395 -1.4447 7 6 5.1077 2.5804 -1.3917 8 7 5.2140 3.0349 0.0118 9 6 5.5927 4.4527 0.0787 10 1 5.6302 4.7700 1.1208 11 6 4.5741 5.2801 -0.6621 12 1 3.7804 4.7952 -1.2110 13 6 4.6555 6.6564 -0.6393 14 7 3.7663 7.3785 -1.2854 15 14 6.0280 7.4951 0.3104 16 1 7.2001 7.6885 -0.5806 17 1 5.5559 8.8149 0.8008 18 1 6.4192 6.6487 1.4662 19 6 6.9687 4.6439 -0.5624 20 6 8.0238 3.9074 0.2655 21 6 3.8736 2.8130 0.6119 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 3.1896 1.8688 -2.1260 28 1 4.3644 0.5706 -1.7560 29 1 4.8673 3.4243 -2.0382 30 1 6.0472 2.1268 -1.7074 31 1 3.8238 8.3466 -1.2696 32 1 6.9566 4.2422 -1.5756 33 1 7.2095 5.7064 -0.5957 34 1 7.7372 2.8612 0.3715 35 1 8.9890 3.9707 -0.2368 36 1 8.0967 4.3658 1.2518 37 1 3.9454 2.7398 1.6971 38 1 3.1865 3.6087 0.3236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701709632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:04 Heat of formation + Delta-G solvation = -67.473731 kcal Electronic energy + Delta-G solvation = -16761.344172 eV Core-core repulsion = 14216.849085 eV Total energy + Delta-G solvation = -2544.495087 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46879 -38.45392 -35.54393 -34.00334 -32.12921 -30.95561 -29.14500 -28.25173 -24.59143 -23.73960 -22.93720 -21.84904 -20.78841 -18.96934 -17.92540 -17.24917 -16.38766 -16.15258 -15.83153 -15.47382 -14.78593 -14.51264 -14.29172 -14.13097 -13.71756 -13.50681 -13.43202 -13.07328 -12.85973 -12.66481 -12.32788 -12.24654 -12.12739 -11.99349 -11.89022 -11.58286 -11.47751 -11.26414 -11.19307 -10.71635 -10.40547 -9.07451 -8.31743 -6.35535 1.29608 1.34275 1.44696 2.30646 2.66905 3.03127 3.52688 3.76756 3.87356 4.12281 4.21118 4.34938 4.39023 4.44724 4.46731 4.52831 4.64761 4.66057 4.84143 4.91621 4.96985 4.98622 5.04901 5.09275 5.14219 5.17330 5.24297 5.29771 5.31439 5.47476 5.52744 5.60256 6.09661 6.21295 6.33336 6.46095 6.72088 7.31152 8.84748 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.007925 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.881472 B = 3532.193994 C = 4066.596283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.408 6.408 4 C 0.096 3.904 5 H 0.095 0.905 6 C -0.144 4.144 7 C 0.038 3.962 8 N -0.494 5.494 9 C 0.174 3.826 10 H 0.033 0.967 11 C -0.535 4.535 12 H 0.036 0.964 13 C 0.014 3.986 14 N -0.949 5.949 15 Si 0.942 3.058 16 H -0.264 1.264 17 H -0.298 1.298 18 H -0.243 1.243 19 C -0.118 4.118 20 C -0.137 4.137 21 C 0.039 3.961 22 H 0.097 0.903 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.264 0.736 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -14.868 3.404 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.327 6.327 4 C 0.037 3.963 5 H 0.113 0.887 6 C -0.182 4.182 7 C -0.090 4.090 8 N -0.218 5.218 9 C 0.065 3.935 10 H 0.051 0.949 11 C -0.574 4.574 12 H 0.054 0.946 13 C -0.183 4.183 14 N -0.589 5.589 15 Si 0.768 3.232 16 H -0.190 1.190 17 H -0.225 1.225 18 H -0.167 1.167 19 C -0.156 4.156 20 C -0.194 4.194 21 C -0.089 4.089 22 H 0.115 0.885 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.357 -14.841 3.646 15.462 hybrid contribution -0.449 1.531 -0.495 1.670 sum 1.908 -13.310 3.150 13.810 Atomic orbital electron populations 1.21775 0.93148 1.03432 1.02311 1.22728 0.96214 0.82792 1.01022 1.87946 1.21261 1.28454 1.95051 1.22952 0.80365 0.97572 0.95364 0.88728 1.22856 0.97755 1.00115 0.97481 1.22733 0.98502 0.96810 0.91000 1.65062 1.24072 1.18563 1.14059 1.19764 0.92559 0.85652 0.95541 0.94915 1.21840 1.12121 0.91931 1.31503 0.94633 1.25833 0.98227 0.98311 0.95964 1.70077 1.37859 1.06222 1.44751 0.85906 0.79442 0.77414 0.80402 1.18953 1.22522 1.16688 1.21776 0.95538 0.98478 0.99831 1.21682 0.97434 1.01326 0.98965 1.23067 0.90824 0.95740 0.99309 0.88480 0.92566 0.93037 0.92543 0.91947 0.92820 0.88550 0.95176 0.89627 0.92694 0.92621 0.94600 0.91141 0.92188 0.93702 0.89982 0.95207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 10.28 71.98 0.74 -2.30 16 2 C 0.05 1.13 6.53 71.98 0.47 1.60 16 3 O -0.41 -13.70 10.08 -148.98 -1.50 -15.20 16 4 C 0.10 3.12 3.51 31.80 0.11 3.23 16 5 H 0.09 2.55 7.88 -2.39 -0.02 2.53 16 6 C -0.14 -4.67 6.69 31.48 0.21 -4.46 16 7 C 0.04 1.44 5.00 86.45 0.43 1.87 16 8 N -0.49 -20.01 4.69 -862.23 -4.04 -24.05 16 9 C 0.17 8.10 1.41 44.17 0.06 8.16 16 10 H 0.03 1.60 6.80 -2.39 -0.02 1.58 16 11 C -0.54 -30.46 6.84 25.60 0.18 -30.29 16 12 H 0.04 2.29 6.30 -2.91 -0.02 2.27 16 13 C 0.01 0.84 5.45 84.66 0.46 1.30 16 14 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 15 Si 0.94 45.18 24.69 68.60 1.69 46.87 16 16 H -0.26 -12.02 6.86 99.48 0.68 -11.34 16 17 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 18 H -0.24 -10.82 6.38 99.48 0.64 -10.19 16 19 C -0.12 -4.91 4.88 30.59 0.15 -4.76 16 20 C -0.14 -4.49 9.86 71.98 0.71 -3.78 16 21 C 0.04 1.58 6.07 86.65 0.53 2.10 16 22 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.23 8.11 -2.38 -0.02 1.21 16 27 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.03 1.39 5.95 -2.39 -0.01 1.38 16 30 H 0.09 2.83 8.09 -2.39 -0.02 2.81 16 31 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 32 H 0.06 2.30 6.99 -2.38 -0.02 2.28 16 33 H 0.04 1.57 4.02 -2.39 -0.01 1.57 16 34 H 0.07 2.21 7.63 -2.39 -0.02 2.19 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.03 1.48 6.32 -2.38 -0.02 1.47 16 Total: -1.00 -66.73 289.90 1.41 -65.32 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.91 Total: 14.38 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 4.05 Total: -27.31 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -3.74 Total: -84.06 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.50 Total: -15.20 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.69 Total: 46.87 kcal Total: -66.73 1.41 -65.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701709632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.155 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds