Wall clock time and date at job start Mon Mar 30 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 H 1.09002 * 109.47261 * 174.08982 * 3 2 1 5 5 C 1.50709 * 109.46750 * 54.09275 * 3 2 1 6 6 H 1.08005 * 119.99416 * 239.99752 * 5 3 2 7 7 C 1.37876 * 120.00120 * 60.00203 * 5 3 2 8 8 N 1.31517 * 119.99906 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99857 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47131 * 90.00019 * 9 7 5 11 11 H 1.48501 * 109.47378 * 209.99594 * 9 7 5 12 12 H 1.48497 * 109.47336 * 330.00019 * 9 7 5 13 13 N 1.46897 * 109.47207 * 294.09457 * 3 2 1 14 14 C 1.46898 * 110.99962 * 275.79571 * 13 3 2 15 15 C 1.52999 * 109.47187 * 176.17630 * 14 13 3 16 16 C 1.53002 * 109.46841 * 180.02562 * 15 14 13 17 17 C 1.53784 * 113.61367 * 272.49354 * 16 15 14 18 18 C 1.53775 * 87.08137 * 220.02187 * 17 16 15 19 19 O 1.42904 * 113.69068 * 139.99370 * 18 17 16 20 20 C 1.53782 * 87.08481 * 25.43343 * 18 17 16 21 21 H 1.09000 * 109.46622 * 178.55549 * 1 2 3 22 22 H 1.08999 * 109.46651 * 298.54720 * 1 2 3 23 23 H 1.09001 * 109.46863 * 58.54995 * 1 2 3 24 24 H 1.08999 * 109.46812 * 239.99916 * 2 1 3 25 25 H 1.09003 * 109.46845 * 120.00146 * 2 1 3 26 26 H 0.97001 * 119.99473 * 180.02562 * 8 7 5 27 27 H 1.00896 * 111.00506 * 39.75087 * 13 3 2 28 28 H 1.09003 * 109.46636 * 56.17649 * 14 13 3 29 29 H 1.08996 * 109.47297 * 296.17752 * 14 13 3 30 30 H 1.08996 * 109.47101 * 300.00241 * 15 14 13 31 31 H 1.08993 * 109.47256 * 60.00579 * 15 14 13 32 32 H 1.08993 * 112.85094 * 43.80456 * 16 15 14 33 33 H 1.09001 * 113.61408 * 334.57292 * 17 16 15 34 34 H 1.08998 * 113.60876 * 105.47460 * 17 16 15 35 35 H 1.09001 * 113.61532 * 270.88406 * 18 17 16 36 36 H 0.96698 * 113.99975 * 82.46175 * 19 18 17 37 37 H 1.08994 * 113.61929 * 220.01579 * 20 18 17 38 38 H 1.09003 * 113.61149 * 89.11019 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1250 1.4443 0.1058 5 6 1.4218 2.1938 1.1509 6 1 0.8150 3.0670 0.9619 7 6 1.6311 1.7665 2.4450 8 7 2.3697 0.7030 2.6750 9 14 0.8653 2.6982 3.8715 10 1 -0.4770 2.1358 4.1665 11 1 1.7314 2.5667 5.0705 12 1 0.7327 4.1328 3.5115 13 7 1.6703 2.0926 -1.2643 14 6 2.6507 1.7936 -2.3165 15 6 2.1836 2.4068 -3.6381 16 6 3.2045 2.0947 -4.7341 17 6 4.3416 3.1258 -4.8285 18 6 4.2288 2.9936 -6.3564 19 8 4.3595 4.2354 -7.0513 20 6 2.7694 2.5634 -6.1327 21 1 -0.3632 -1.0274 -0.0259 22 1 -0.3632 0.4911 0.9027 23 1 -0.3633 0.5362 -0.8767 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.5166 0.4022 3.5854 27 1 0.7403 1.8251 -1.5500 28 1 2.7439 0.7135 -2.4299 29 1 3.6179 2.2149 -2.0423 30 1 1.2164 1.9855 -3.9123 31 1 2.0904 3.4868 -3.5247 32 1 3.5510 1.0617 -4.7081 33 1 4.0685 4.1124 -4.4542 34 1 5.2899 2.7676 -4.4280 35 1 4.8568 2.2067 -6.7741 36 1 5.2750 4.5113 -7.1950 37 1 2.4486 1.7514 -6.7852 38 1 2.0666 3.3964 -6.1150 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702503746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:06 Heat of formation + Delta-G solvation = -68.384456 kcal Electronic energy + Delta-G solvation = -15932.741732 eV Core-core repulsion = 13388.207152 eV Total energy + Delta-G solvation = -2544.534579 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35495 -38.39144 -36.30559 -34.64046 -32.88029 -30.37815 -28.00139 -26.63749 -25.33054 -24.46313 -22.25596 -21.19492 -20.38435 -18.39943 -18.07079 -16.75185 -16.72280 -16.08212 -15.59446 -15.50559 -15.09713 -14.41436 -14.30625 -14.07847 -13.71308 -13.34453 -13.03637 -12.81392 -12.69874 -12.59116 -12.44936 -12.26569 -12.00481 -11.76663 -11.70123 -11.48321 -11.28880 -11.04382 -10.93984 -10.57965 -10.43181 -8.90048 -8.05143 -6.13729 1.43042 1.44418 1.54722 2.46244 3.23533 3.30833 3.63682 3.69753 3.74719 3.95774 4.05423 4.35393 4.41496 4.52933 4.60760 4.64750 4.71713 4.78918 4.81255 4.87836 4.90937 5.02938 5.10653 5.18482 5.27516 5.34522 5.39992 5.44145 5.59532 5.68815 5.74760 5.86240 6.33121 6.70888 6.89261 6.94073 7.00688 7.54354 9.00431 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045265 B = 0.004827 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.435125 B = 5798.997873 C = 6055.558017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.219 3.781 4 H -0.006 1.006 5 C -0.502 4.502 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.692 5.692 14 C 0.065 3.935 15 C -0.093 4.093 16 C -0.105 4.105 17 C -0.166 4.166 18 C 0.080 3.920 19 O -0.581 6.581 20 C -0.125 4.125 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.259 0.741 27 H 0.332 0.668 28 H 0.017 0.983 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.393 0.607 37 H 0.085 0.915 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 1.131 -16.067 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.110 3.890 4 H 0.012 0.988 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.324 5.324 14 C -0.065 4.065 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.204 4.204 18 C 0.021 3.979 19 O -0.389 6.389 20 C -0.162 4.162 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.151 0.849 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.243 0.757 37 H 0.103 0.897 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.170 1.615 -15.744 15.975 hybrid contribution 0.282 -0.587 1.047 1.232 sum 2.451 1.028 -14.698 14.936 Atomic orbital electron populations 1.21449 0.95855 0.99363 1.00899 1.21940 0.96591 0.99951 0.99273 1.18953 0.93499 0.89623 0.86875 0.98816 1.21303 1.30323 1.11386 0.91016 0.93069 1.25607 0.95976 0.95942 1.00983 1.70021 1.40232 1.25309 1.20653 0.85642 0.78361 0.79174 0.78967 1.20065 1.21200 1.19726 1.60730 1.05096 1.63052 1.03484 1.21893 0.95955 0.96867 0.91736 1.21419 0.98535 1.00710 0.92422 1.22284 0.96314 0.99586 0.94250 1.23729 0.99299 0.99643 0.97745 1.23409 0.97941 0.86449 0.90087 1.86483 1.33752 1.39691 1.78980 1.23102 0.96000 1.01071 0.96023 0.93748 0.94017 0.93191 0.95602 0.92117 0.93213 0.84939 0.96486 0.93401 0.91582 0.92178 0.88349 0.90673 0.90971 0.88087 0.75680 0.89656 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.39 71.98 0.68 -4.30 16 2 C -0.14 -6.53 5.50 30.60 0.17 -6.37 16 3 C 0.22 11.17 2.33 44.17 0.10 11.28 16 4 H -0.01 -0.35 7.86 -2.39 -0.02 -0.37 16 5 C -0.50 -27.82 7.35 25.60 0.19 -27.63 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.72 5.22 84.65 0.44 1.16 16 8 N -0.92 -53.26 11.39 21.45 0.24 -53.01 16 9 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.69 -29.67 6.25 -495.45 -3.10 -32.76 16 14 C 0.07 2.32 5.47 86.30 0.47 2.79 16 15 C -0.09 -2.59 5.27 30.59 0.16 -2.43 16 16 C -0.11 -2.35 3.65 -10.26 -0.04 -2.39 16 17 C -0.17 -3.58 7.47 31.12 0.23 -3.35 16 18 C 0.08 1.45 5.21 31.12 0.16 1.62 16 19 O -0.58 -11.25 13.67 -148.98 -2.04 -13.29 16 20 C -0.12 -2.48 7.47 31.12 0.23 -2.25 16 21 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.04 1.94 7.05 -2.39 -0.02 1.93 16 23 H 0.05 1.87 6.42 -2.39 -0.02 1.86 16 24 H 0.03 1.11 7.24 -2.39 -0.02 1.09 16 25 H 0.06 3.27 6.25 -2.39 -0.01 3.25 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.33 13.27 6.56 -89.70 -0.59 12.68 16 28 H 0.02 0.61 7.23 -2.39 -0.02 0.59 16 29 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.80 7.84 -2.39 -0.02 1.78 16 32 H 0.10 2.05 8.13 -2.39 -0.02 2.03 16 33 H 0.07 1.86 7.90 -2.39 -0.02 1.84 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.39 4.06 9.12 -74.06 -0.68 3.38 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -62.67 301.16 -0.29 -62.97 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.23 Total: 21.68 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 2.80 Total: -31.87 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -2.85 Total: -85.78 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -2.04 Total: -13.29 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.67 -0.29 -62.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702503746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.417 kcal (2) G-P(sol) polarization free energy of solvation -62.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds