Wall clock time and date at job start Mon Mar 30 2020 03:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 H 1.09000 * 109.46938 * 55.09731 * 3 2 1 5 5 C 1.50691 * 109.47000 * 175.10384 * 3 2 1 6 6 H 1.08002 * 120.00698 * 119.99996 * 5 3 2 7 7 C 1.37886 * 120.00070 * 299.99841 * 5 3 2 8 8 N 1.31512 * 119.99793 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00039 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47317 * 59.99431 * 9 7 5 11 11 H 1.48500 * 109.46896 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46893 * 299.99482 * 9 7 5 13 13 N 1.46901 * 109.46943 * 295.10160 * 3 2 1 14 14 C 1.46897 * 110.99893 * 154.21577 * 13 3 2 15 15 C 1.53003 * 109.46993 * 185.19906 * 14 13 3 16 16 C 1.53003 * 109.47095 * 180.02562 * 15 14 13 17 17 C 1.53785 * 113.61300 * 272.50047 * 16 15 14 18 18 C 1.53786 * 87.07909 * 220.01815 * 17 16 15 19 19 O 1.42899 * 113.68842 * 139.99364 * 18 17 16 20 20 C 1.53778 * 113.61387 * 175.00312 * 16 15 14 21 21 H 1.09001 * 109.47279 * 180.45523 * 1 2 3 22 22 H 1.09004 * 109.47151 * 300.44809 * 1 2 3 23 23 H 1.08998 * 109.47398 * 60.44640 * 1 2 3 24 24 H 1.08999 * 109.46419 * 239.99820 * 2 1 3 25 25 H 1.08998 * 109.46916 * 120.00412 * 2 1 3 26 26 H 0.97003 * 119.99770 * 180.02562 * 8 7 5 27 27 H 1.00901 * 110.99828 * 278.17403 * 13 3 2 28 28 H 1.09002 * 109.46942 * 65.20293 * 14 13 3 29 29 H 1.08998 * 109.46920 * 305.20081 * 14 13 3 30 30 H 1.08993 * 109.47558 * 300.00313 * 15 14 13 31 31 H 1.09002 * 109.46960 * 60.00399 * 15 14 13 32 32 H 1.09001 * 112.84703 * 43.80417 * 16 15 14 33 33 H 1.08997 * 113.61824 * 334.56490 * 17 16 15 34 34 H 1.09003 * 113.61071 * 105.47127 * 17 16 15 35 35 H 1.09002 * 113.61154 * 270.88451 * 18 17 16 36 36 H 0.96698 * 113.99822 * 82.46709 * 19 18 17 37 37 H 1.08994 * 113.61405 * 254.52828 * 20 16 15 38 38 H 1.08998 * 113.61775 * 25.43291 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 0.8428 5 6 3.5421 1.4441 0.1213 6 1 4.1462 1.8891 -0.6556 7 6 4.1453 0.8775 1.2241 8 7 3.4099 0.3352 2.1699 9 14 6.0073 0.8802 1.3748 10 1 6.5019 2.2804 1.3750 11 1 6.4022 0.2160 2.6428 12 1 6.5978 0.1468 0.2265 13 7 1.6493 2.1000 -1.2542 14 6 1.5527 3.5551 -1.0779 15 6 1.0202 4.1904 -2.3639 16 6 0.9202 5.7061 -2.1804 17 6 -0.4164 6.1665 -1.5749 18 6 -0.3670 7.3454 -2.5612 19 8 -1.6352 7.6662 -3.1363 20 6 0.5091 6.4555 -3.4588 21 1 -0.3634 -1.0276 0.0082 22 1 -0.3634 0.5208 0.8860 23 1 -0.3634 0.5069 -0.8939 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8343 -0.0630 2.9459 27 1 2.2893 1.8676 -1.9989 28 1 2.5396 3.9603 -0.8541 29 1 0.8736 3.7770 -0.2547 30 1 1.6992 3.9685 -3.1870 31 1 0.0333 3.7853 -2.5876 32 1 1.7942 6.1313 -1.6869 33 1 -1.2400 5.4769 -1.7596 34 1 -0.3415 6.4679 -0.5300 35 1 0.1542 8.2196 -2.1710 36 1 -2.1907 8.2257 -2.5764 37 1 1.3309 6.9903 -3.9348 38 1 -0.0616 5.8450 -4.1585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702503750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:08 Heat of formation + Delta-G solvation = -72.592769 kcal Electronic energy + Delta-G solvation = -15916.639687 eV Core-core repulsion = 13371.922622 eV Total energy + Delta-G solvation = -2544.717065 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33576 -38.09302 -36.27545 -34.57101 -33.20540 -30.61556 -28.01678 -26.63209 -25.16796 -23.92743 -22.17140 -21.32906 -20.38458 -18.73866 -18.32237 -16.80826 -16.54613 -15.83975 -15.70663 -15.43613 -14.95367 -14.72306 -14.26746 -13.71945 -13.34847 -13.32626 -13.11262 -13.00603 -12.85099 -12.59327 -12.43567 -12.21824 -12.06388 -11.87447 -11.60924 -11.51354 -11.19204 -11.06637 -10.96550 -10.56910 -10.46531 -9.04005 -8.05506 -6.28488 1.38989 1.39681 1.47445 2.39849 3.13502 3.31439 3.64685 3.70744 3.75482 3.97659 4.05707 4.39620 4.47380 4.61588 4.64400 4.76217 4.82915 4.85386 4.88006 4.92641 4.95214 5.03023 5.16037 5.23584 5.31722 5.36827 5.41537 5.51303 5.60036 5.64317 5.77316 6.10543 6.20651 6.39679 6.83076 6.94264 7.02446 7.43132 8.90795 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031837 B = 0.005424 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.267770 B = 5160.584312 C = 5716.419505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.221 3.779 4 H -0.004 1.004 5 C -0.562 4.562 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.684 5.684 14 C 0.073 3.927 15 C -0.089 4.089 16 C -0.108 4.108 17 C -0.164 4.164 18 C 0.080 3.920 19 O -0.580 6.580 20 C -0.124 4.124 21 H 0.045 0.955 22 H 0.029 0.971 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.262 0.738 27 H 0.329 0.671 28 H 0.009 0.991 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.393 0.607 37 H 0.082 0.918 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 11.755 -7.670 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.601 4.601 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.313 5.313 14 C -0.057 4.057 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.202 4.202 18 C 0.021 3.979 19 O -0.388 6.388 20 C -0.161 4.161 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.448 11.194 -7.869 15.126 hybrid contribution 1.818 0.284 1.088 2.137 sum -4.631 11.478 -6.781 14.113 Atomic orbital electron populations 1.21561 0.96471 0.99745 1.00462 1.21364 0.94379 0.98403 1.00014 1.18923 0.91639 0.91564 0.86709 0.98597 1.22149 0.94038 1.38196 1.05715 0.93212 1.25688 1.02260 0.94682 0.95423 1.70005 1.36559 1.38669 1.09799 0.85714 0.80838 0.78226 0.77461 1.20012 1.20827 1.19651 1.60826 1.54436 1.07756 1.08249 1.21746 0.97620 0.88504 0.97784 1.21384 1.01259 0.93661 0.96386 1.22290 0.97987 0.94734 0.97730 1.23721 0.97722 0.99131 0.99636 1.23390 0.84762 0.95498 0.94207 1.86479 1.29442 1.73850 1.49006 1.23093 0.98737 0.97645 0.96624 0.93551 0.95212 0.92406 0.95287 0.92105 0.92853 0.85497 0.97296 0.93490 0.91901 0.91797 0.88910 0.90328 0.91143 0.88301 0.75680 0.89891 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 9.79 71.98 0.70 -4.48 16 2 C -0.10 -5.05 5.45 30.59 0.17 -4.89 16 3 C 0.22 11.24 1.98 44.17 0.09 11.32 16 4 H 0.00 -0.23 7.70 -2.39 -0.02 -0.24 16 5 C -0.56 -30.82 8.47 25.60 0.22 -30.61 16 6 H 0.05 2.69 7.73 -2.91 -0.02 2.66 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -52.56 11.29 21.45 0.24 -52.31 16 9 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.68 -29.04 5.68 -495.46 -2.81 -31.86 16 14 C 0.07 2.75 5.50 86.30 0.47 3.22 16 15 C -0.09 -2.57 5.35 30.60 0.16 -2.41 16 16 C -0.11 -2.58 3.65 -10.27 -0.04 -2.62 16 17 C -0.16 -3.65 7.47 31.12 0.23 -3.42 16 18 C 0.08 1.52 5.21 31.12 0.16 1.69 16 19 O -0.58 -11.37 13.67 -148.98 -2.04 -13.41 16 20 C -0.12 -2.58 7.47 31.12 0.23 -2.35 16 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 2.27 7.76 -2.39 -0.02 2.25 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.33 13.69 8.46 -89.69 -0.76 12.93 16 28 H 0.01 0.36 8.11 -2.39 -0.02 0.34 16 29 H 0.05 1.85 7.92 -2.39 -0.02 1.83 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.89 7.85 -2.39 -0.02 1.87 16 32 H 0.09 2.18 8.13 -2.39 -0.02 2.16 16 33 H 0.08 1.93 7.90 -2.39 -0.02 1.91 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.39 4.14 9.12 -74.06 -0.68 3.47 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -61.45 307.16 -0.14 -61.59 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.41 Total: 23.52 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 2.85 Total: -33.01 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -2.57 Total: -84.17 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -2.04 Total: -13.41 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -61.45 -0.14 -61.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702503750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.007 kcal (2) G-P(sol) polarization free energy of solvation -61.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds