Wall clock time and date at job start Mon Mar 30 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47597 * 2 1 4 4 H 1.09002 * 109.46335 * 323.16500 * 3 2 1 5 5 C 1.50699 * 109.47253 * 203.16897 * 3 2 1 6 6 H 1.08002 * 119.99435 * 244.54539 * 5 3 2 7 7 C 1.37874 * 120.00380 * 64.54608 * 5 3 2 8 8 N 1.31511 * 119.99765 * 196.13647 * 7 5 3 9 9 Si 1.86798 * 119.99816 * 16.13333 * 7 5 3 10 10 H 1.48506 * 109.46951 * 89.92131 * 9 7 5 11 11 H 1.48501 * 109.47179 * 209.91786 * 9 7 5 12 12 H 1.48494 * 109.47361 * 329.92115 * 9 7 5 13 13 N 1.46895 * 109.47353 * 83.16257 * 3 2 1 14 14 C 1.46898 * 110.99906 * 54.37917 * 13 3 2 15 15 C 1.46902 * 111.00050 * 290.42613 * 13 3 2 16 16 H 1.09006 * 110.01635 * 72.75925 * 15 13 3 17 17 C 1.53871 * 110.03512 * 311.36997 * 15 13 3 18 18 C 1.54267 * 106.64037 * 240.69376 * 17 15 13 19 19 C 1.54964 * 104.16114 * 336.44151 * 18 17 15 20 20 C 1.54269 * 110.03459 * 194.20051 * 15 13 3 21 21 H 1.09009 * 110.48143 * 24.21580 * 20 15 13 22 22 O 1.42895 * 110.48739 * 261.57506 * 20 15 13 23 23 H 1.08997 * 109.46731 * 64.12831 * 1 2 3 24 24 H 1.09004 * 109.46965 * 184.12985 * 1 2 3 25 25 H 1.09000 * 109.47346 * 304.12794 * 1 2 3 26 26 H 1.08999 * 109.47510 * 239.99071 * 2 1 3 27 27 H 1.09004 * 109.47028 * 119.99904 * 2 1 3 28 28 H 0.97003 * 119.99546 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47263 * 296.04888 * 14 13 3 30 30 H 1.08999 * 109.47126 * 56.04704 * 14 13 3 31 31 H 1.09000 * 109.47257 * 176.04394 * 14 13 3 32 32 H 1.09005 * 110.02837 * 359.97438 * 17 15 13 33 33 H 1.08997 * 110.03512 * 121.37743 * 17 15 13 34 34 H 1.08996 * 110.48849 * 95.09202 * 18 17 15 35 35 H 1.09006 * 110.48505 * 217.73111 * 18 17 15 36 36 H 1.09001 * 110.71834 * 279.58141 * 19 18 17 37 37 H 1.08993 * 110.92857 * 156.29768 * 19 18 17 38 38 H 0.96707 * 114.00001 * 179.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3857 2.0591 -0.6161 5 6 3.4390 1.4806 -0.5590 6 1 4.2638 1.7818 0.0699 7 6 3.6661 1.1309 -1.8732 8 7 4.8864 0.8552 -2.2788 9 14 2.2406 1.0486 -3.0775 10 1 2.0581 2.3750 -3.7198 11 1 2.5302 0.0301 -4.1186 12 1 1.0001 0.6754 -2.3514 13 7 2.0479 1.9591 1.3751 14 6 2.8133 1.0758 2.2649 15 6 0.6793 2.1506 1.8733 16 1 0.2185 1.1844 2.0791 17 6 -0.1558 2.9227 0.8369 18 6 -0.6158 4.2258 1.5225 19 6 -0.5679 3.8954 3.0358 20 6 0.6985 3.0114 3.1534 21 1 1.5949 3.6310 3.1830 22 8 0.6236 2.1822 4.3148 23 1 -0.3633 0.4484 -0.9247 24 1 -0.3633 -1.0250 0.0740 25 1 -0.3634 0.5766 0.8507 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0461 0.6088 -3.2033 29 1 2.3230 0.1040 2.3219 30 1 3.8226 0.9510 1.8728 31 1 2.8624 1.5170 3.2605 32 1 0.4547 3.1558 -0.0356 33 1 -1.0217 2.3313 0.5396 34 1 0.0678 5.0419 1.2886 35 1 -1.6316 4.4788 1.2185 36 1 -1.4559 3.3400 3.3375 37 1 -0.4617 4.8033 3.6294 38 1 0.6324 2.6717 5.1488 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708560352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:59 Heat of formation + Delta-G solvation = -34.197195 kcal Electronic energy + Delta-G solvation = -17410.611057 eV Core-core repulsion = 14867.558949 eV Total energy + Delta-G solvation = -2543.052108 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40067 -36.60310 -34.53650 -32.40917 -31.34207 -28.32952 -27.70377 -26.48175 -23.99952 -22.28663 -20.84584 -20.14478 -18.35016 -17.27378 -16.85819 -15.52577 -15.28406 -14.77374 -14.01158 -13.56957 -13.54009 -13.07742 -12.60248 -12.42775 -12.26551 -12.01188 -11.70598 -11.47083 -11.09716 -10.92051 -10.76540 -10.65641 -10.48709 -10.40735 -10.22758 -10.04762 -9.68859 -9.54293 -9.44566 -9.06705 -8.29842 -7.17572 -6.05339 -3.97030 3.31010 3.40492 3.42848 4.35384 4.46406 4.74394 4.84387 5.14446 5.24824 5.25411 5.62491 5.64699 5.72185 5.83473 5.90460 5.99192 6.02958 6.07045 6.15785 6.21965 6.26448 6.39144 6.44914 6.47522 6.58170 6.68332 6.72573 6.92220 6.93487 7.05978 7.37604 7.70863 7.85001 8.05100 8.21884 8.72369 9.07240 9.61153 11.07465 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.009580 C = 0.008855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.922863 B = 2922.011386 C = 3161.161688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.158 4.158 3 C 0.184 3.816 4 H 0.044 0.956 5 C -0.505 4.505 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.854 3.146 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.249 1.249 13 N -0.518 5.518 14 C 0.034 3.966 15 C 0.080 3.920 16 H 0.056 0.944 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.155 4.155 20 C 0.103 3.897 21 H 0.072 0.928 22 O -0.566 6.566 23 H 0.048 0.952 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 4.039 9.039 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.198 4.198 3 C 0.077 3.923 4 H 0.062 0.938 5 C -0.543 4.543 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.681 3.319 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.173 1.173 13 N -0.242 5.242 14 C -0.114 4.114 15 C -0.029 4.029 16 H 0.074 0.926 17 C -0.168 4.168 18 C -0.156 4.156 19 C -0.193 4.193 20 C 0.044 3.956 21 H 0.090 0.910 22 O -0.370 6.370 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.722 3.963 8.405 14.188 hybrid contribution -1.039 -0.477 -0.446 1.227 sum -11.761 3.486 7.960 14.623 Atomic orbital electron populations 1.22437 0.98589 1.00252 1.01630 1.22637 0.93205 1.02152 1.01771 1.19841 0.97790 0.89053 0.85632 0.93822 1.20906 0.91883 1.45068 0.96431 0.90351 1.24852 0.95188 0.94458 0.98239 1.69975 1.20608 1.45627 1.16980 0.87312 0.85049 0.77940 0.81574 1.20635 1.21669 1.17250 1.62334 1.09897 1.48460 1.03467 1.22286 0.99466 0.94010 0.95624 1.22302 0.91296 0.97390 0.91905 0.92641 1.22501 0.99190 0.95654 0.99407 1.22234 1.00792 0.98273 0.94315 1.23156 0.99161 0.99581 0.97415 1.22844 0.96277 0.91193 0.85332 0.90983 1.86538 1.97136 1.37416 1.15955 0.93262 0.94563 0.91792 0.92165 0.92487 0.92802 0.96298 0.90542 0.93211 0.89140 0.91811 0.91256 0.91999 0.91168 0.91854 0.78411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 8.52 37.16 0.32 -2.91 16 2 C -0.16 -3.48 4.32 -26.73 -0.12 -3.59 16 3 C 0.18 4.27 1.23 -68.87 -0.08 4.19 16 4 H 0.04 1.03 3.85 -51.93 -0.20 0.83 16 5 C -0.51 -13.99 8.42 -34.44 -0.29 -14.28 16 6 H 0.08 2.39 7.17 -52.49 -0.38 2.01 16 7 C 0.07 2.12 5.15 -17.82 -0.09 2.03 16 8 N -0.89 -27.16 13.96 55.43 0.77 -26.39 16 9 Si 0.85 20.92 25.82 -169.99 -4.39 16.53 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.25 -5.65 4.38 56.52 0.25 -5.40 16 13 N -0.52 -10.79 4.52 -226.96 -1.02 -11.82 16 14 C 0.03 0.70 8.64 60.06 0.52 1.21 16 15 C 0.08 1.41 1.61 -66.59 -0.11 1.30 16 16 H 0.06 1.04 5.57 -51.93 -0.29 0.76 16 17 C -0.13 -2.10 4.99 -25.61 -0.13 -2.23 16 18 C -0.12 -1.55 6.84 -25.03 -0.17 -1.73 16 19 C -0.15 -1.90 6.62 -24.70 -0.16 -2.06 16 20 C 0.10 1.52 3.11 -25.07 -0.08 1.45 16 21 H 0.07 1.13 8.05 -51.92 -0.42 0.71 16 22 O -0.57 -7.97 12.86 -35.23 -0.45 -8.43 16 23 H 0.05 0.92 6.84 -51.93 -0.36 0.57 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.13 3.14 -51.93 -0.16 0.96 16 26 H 0.06 1.43 5.60 -51.93 -0.29 1.14 16 27 H 0.06 1.24 5.35 -51.93 -0.28 0.97 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.38 5.99 -51.93 -0.31 0.07 16 30 H 0.08 1.70 6.64 -51.93 -0.34 1.35 16 31 H 0.05 0.92 7.05 -51.93 -0.37 0.55 16 32 H 0.09 1.67 5.58 -51.93 -0.29 1.38 16 33 H 0.06 0.97 6.83 -51.93 -0.35 0.61 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.37 3.42 9.12 45.56 0.42 3.84 16 LS Contribution 271.00 15.07 4.08 4.08 Total: -1.00 -30.33 271.00 -6.43 -36.76 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.02 Total: 5.88 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.39 Total: -16.63 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.25 Total: -38.21 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.45 Total: -8.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.39 Total: 16.53 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.33 -6.43 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708560352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.562 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds