Wall clock time and date at job start Mon Mar 30 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47597 * 2 1 4 4 H 1.09002 * 109.46335 * 323.16500 * 3 2 1 5 5 C 1.50699 * 109.47253 * 203.16897 * 3 2 1 6 6 H 1.08002 * 119.99435 * 244.54539 * 5 3 2 7 7 C 1.37874 * 120.00380 * 64.54608 * 5 3 2 8 8 N 1.31511 * 119.99765 * 196.13647 * 7 5 3 9 9 Si 1.86798 * 119.99816 * 16.13333 * 7 5 3 10 10 H 1.48506 * 109.46951 * 89.92131 * 9 7 5 11 11 H 1.48501 * 109.47179 * 209.91786 * 9 7 5 12 12 H 1.48494 * 109.47361 * 329.92115 * 9 7 5 13 13 N 1.46895 * 109.47353 * 83.16257 * 3 2 1 14 14 C 1.46898 * 110.99906 * 54.37917 * 13 3 2 15 15 C 1.46902 * 111.00050 * 290.42613 * 13 3 2 16 16 H 1.09006 * 110.01635 * 72.75925 * 15 13 3 17 17 C 1.53871 * 110.03512 * 311.36997 * 15 13 3 18 18 C 1.54267 * 106.64037 * 240.69376 * 17 15 13 19 19 C 1.54964 * 104.16114 * 336.44151 * 18 17 15 20 20 C 1.54269 * 110.03459 * 194.20051 * 15 13 3 21 21 H 1.09009 * 110.48143 * 24.21580 * 20 15 13 22 22 O 1.42895 * 110.48739 * 261.57506 * 20 15 13 23 23 H 1.08997 * 109.46731 * 64.12831 * 1 2 3 24 24 H 1.09004 * 109.46965 * 184.12985 * 1 2 3 25 25 H 1.09000 * 109.47346 * 304.12794 * 1 2 3 26 26 H 1.08999 * 109.47510 * 239.99071 * 2 1 3 27 27 H 1.09004 * 109.47028 * 119.99904 * 2 1 3 28 28 H 0.97003 * 119.99546 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47263 * 296.04888 * 14 13 3 30 30 H 1.08999 * 109.47126 * 56.04704 * 14 13 3 31 31 H 1.09000 * 109.47257 * 176.04394 * 14 13 3 32 32 H 1.09005 * 110.02837 * 359.97438 * 17 15 13 33 33 H 1.08997 * 110.03512 * 121.37743 * 17 15 13 34 34 H 1.08996 * 110.48849 * 95.09202 * 18 17 15 35 35 H 1.09006 * 110.48505 * 217.73111 * 18 17 15 36 36 H 1.09001 * 110.71834 * 279.58141 * 19 18 17 37 37 H 1.08993 * 110.92857 * 156.29768 * 19 18 17 38 38 H 0.96707 * 114.00001 * 179.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3857 2.0591 -0.6161 5 6 3.4390 1.4806 -0.5590 6 1 4.2638 1.7818 0.0699 7 6 3.6661 1.1309 -1.8732 8 7 4.8864 0.8552 -2.2788 9 14 2.2406 1.0486 -3.0775 10 1 2.0581 2.3750 -3.7198 11 1 2.5302 0.0301 -4.1186 12 1 1.0001 0.6754 -2.3514 13 7 2.0479 1.9591 1.3751 14 6 2.8133 1.0758 2.2649 15 6 0.6793 2.1506 1.8733 16 1 0.2185 1.1844 2.0791 17 6 -0.1558 2.9227 0.8369 18 6 -0.6158 4.2258 1.5225 19 6 -0.5679 3.8954 3.0358 20 6 0.6985 3.0114 3.1534 21 1 1.5949 3.6310 3.1830 22 8 0.6236 2.1822 4.3148 23 1 -0.3633 0.4484 -0.9247 24 1 -0.3633 -1.0250 0.0740 25 1 -0.3634 0.5766 0.8507 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0461 0.6088 -3.2033 29 1 2.3230 0.1040 2.3219 30 1 3.8226 0.9510 1.8728 31 1 2.8624 1.5170 3.2605 32 1 0.4547 3.1558 -0.0356 33 1 -1.0217 2.3313 0.5396 34 1 0.0678 5.0419 1.2886 35 1 -1.6316 4.4788 1.2185 36 1 -1.4559 3.3400 3.3375 37 1 -0.4617 4.8033 3.6294 38 1 0.6324 2.6717 5.1488 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708560352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:59 Heat of formation + Delta-G solvation = -57.947663 kcal Electronic energy + Delta-G solvation = -17411.640955 eV Core-core repulsion = 14867.558949 eV Total energy + Delta-G solvation = -2544.082006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80289 -37.99960 -35.72733 -34.44550 -33.03617 -29.90021 -29.13958 -27.86366 -25.77533 -23.96909 -22.19273 -21.46114 -19.88757 -18.84074 -18.46838 -17.16058 -16.76359 -16.23668 -15.73093 -14.91284 -14.82707 -14.71550 -14.29595 -14.05878 -13.80175 -13.28366 -13.19903 -13.07255 -12.66964 -12.57622 -12.38333 -12.17760 -11.99787 -11.82405 -11.60720 -11.50696 -11.39979 -11.11255 -11.00196 -10.71245 -10.43073 -8.82810 -8.26475 -6.22450 1.35610 1.38665 1.48533 2.38589 3.06551 3.14610 3.49622 3.69772 3.95257 4.08042 4.29672 4.37940 4.41746 4.47636 4.56140 4.60465 4.65611 4.70202 4.80413 4.88156 4.98736 5.04919 5.13096 5.15331 5.17211 5.20974 5.28135 5.30272 5.35615 5.46800 5.62256 5.71250 6.12619 6.47032 6.79089 6.82281 7.00307 7.39785 8.90009 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.009580 C = 0.008855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.922863 B = 2922.011386 C = 3161.161688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.157 4.157 3 C 0.190 3.810 4 H 0.050 0.950 5 C -0.508 4.508 6 H 0.032 0.968 7 C 0.017 3.983 8 N -0.945 5.945 9 Si 0.920 3.080 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.219 1.219 13 N -0.531 5.531 14 C 0.045 3.955 15 C 0.075 3.925 16 H 0.049 0.951 17 C -0.132 4.132 18 C -0.115 4.115 19 C -0.141 4.141 20 C 0.106 3.894 21 H 0.060 0.940 22 O -0.579 6.579 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.263 0.737 29 H 0.020 0.980 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 4.702 9.869 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.196 4.196 3 C 0.082 3.918 4 H 0.067 0.933 5 C -0.546 4.546 6 H 0.050 0.950 7 C -0.180 4.180 8 N -0.586 5.586 9 Si 0.744 3.256 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.142 1.142 13 N -0.255 5.255 14 C -0.103 4.103 15 C -0.034 4.034 16 H 0.066 0.934 17 C -0.170 4.170 18 C -0.153 4.153 19 C -0.179 4.179 20 C 0.047 3.953 21 H 0.078 0.922 22 O -0.387 6.387 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -14.153 4.643 9.278 17.549 hybrid contribution 0.128 -0.673 -0.577 0.895 sum -14.026 3.970 8.702 16.976 Atomic orbital electron populations 1.22353 0.95424 1.01912 1.02425 1.22508 0.95982 1.00581 1.00565 1.19644 0.94808 0.90208 0.87107 0.93250 1.21176 0.93237 1.43994 0.96174 0.94956 1.25704 0.97917 0.94217 1.00211 1.70126 1.23272 1.47705 1.17447 0.86261 0.82567 0.77927 0.78861 1.20116 1.21957 1.14182 1.62252 1.12491 1.48200 1.02517 1.22134 0.97680 0.94327 0.96194 1.22454 0.89092 0.97903 0.93911 0.93356 1.22496 0.98900 0.97375 0.98216 1.22241 1.01967 0.96394 0.94653 1.23078 0.97779 1.00022 0.97030 1.22688 0.97443 0.90685 0.84531 0.92202 1.86478 1.97160 1.38193 1.16901 0.92861 0.92621 0.90479 0.94219 0.93008 0.92814 0.96215 0.93846 0.91334 0.91745 0.90515 0.91611 0.89595 0.90184 0.89390 0.75846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.65 8.52 71.98 0.61 -5.04 16 2 C -0.16 -6.75 4.32 30.59 0.13 -6.62 16 3 C 0.19 8.82 1.23 44.17 0.05 8.88 16 4 H 0.05 2.27 3.85 -2.39 -0.01 2.27 16 5 C -0.51 -29.23 8.42 25.60 0.22 -29.02 16 6 H 0.03 2.10 7.17 -2.91 -0.02 2.08 16 7 C 0.02 0.98 5.15 84.65 0.44 1.42 16 8 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 9 Si 0.92 43.52 25.82 68.60 1.77 45.29 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.22 -9.23 4.38 99.48 0.44 -8.79 16 13 N -0.53 -22.07 4.52 -871.97 -3.94 -26.01 16 14 C 0.04 1.85 8.64 127.69 1.10 2.95 16 15 C 0.07 2.48 1.61 45.64 0.07 2.55 16 16 H 0.05 1.69 5.57 -2.38 -0.01 1.68 16 17 C -0.13 -3.92 4.99 31.32 0.16 -3.76 16 18 C -0.11 -2.59 6.84 31.70 0.22 -2.38 16 19 C -0.14 -2.86 6.62 31.91 0.21 -2.65 16 20 C 0.11 2.86 3.11 31.67 0.10 2.96 16 21 H 0.06 1.77 8.05 -2.38 -0.02 1.75 16 22 O -0.58 -14.62 12.86 -148.98 -1.92 -16.53 16 23 H 0.05 1.79 6.84 -2.39 -0.02 1.77 16 24 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.08 2.46 3.14 -2.39 -0.01 2.45 16 26 H 0.04 1.85 5.60 -2.39 -0.01 1.83 16 27 H 0.05 2.25 5.35 -2.39 -0.01 2.24 16 28 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.02 0.79 5.99 -2.39 -0.01 0.78 16 30 H 0.04 2.03 6.64 -2.39 -0.02 2.02 16 31 H 0.07 2.51 7.05 -2.39 -0.02 2.49 16 32 H 0.06 2.26 5.58 -2.38 -0.01 2.25 16 33 H 0.08 2.05 6.83 -2.39 -0.02 2.03 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.39 5.95 9.12 -74.05 -0.68 5.28 16 Total: -1.00 -67.77 271.00 -0.36 -68.12 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.12 Total: 19.33 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 3.31 Total: -30.70 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -3.64 Total: -85.50 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.92 Total: -16.53 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.77 Total: 45.29 kcal Total: -67.77 -0.36 -68.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708560352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.174 kcal (2) G-P(sol) polarization free energy of solvation -67.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds