Wall clock time and date at job start Mon Mar 30 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 H 1.09004 * 109.47426 * 320.75953 * 3 2 1 5 5 C 1.50702 * 109.47152 * 200.76302 * 3 2 1 6 6 H 1.08000 * 120.00257 * 240.00092 * 5 3 2 7 7 C 1.37876 * 120.00161 * 59.99805 * 5 3 2 8 8 N 1.31520 * 119.99724 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00484 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46749 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47287 * 119.99681 * 9 7 5 12 12 H 1.48505 * 109.47253 * 240.00307 * 9 7 5 13 13 N 1.46898 * 109.47378 * 80.76017 * 3 2 1 14 14 C 1.46901 * 110.99648 * 52.21074 * 13 3 2 15 15 C 1.46897 * 111.00137 * 288.25566 * 13 3 2 16 16 H 1.09001 * 110.01348 * 75.86664 * 15 13 3 17 17 C 1.54266 * 110.03274 * 314.42176 * 15 13 3 18 18 C 1.54890 * 104.19622 * 217.10504 * 17 15 13 19 19 C 1.54886 * 102.74710 * 37.94323 * 18 17 15 20 20 C 1.53875 * 110.03227 * 197.25780 * 15 13 3 21 21 H 1.08997 * 110.03268 * 238.62093 * 20 15 13 22 22 O 1.42903 * 110.03433 * 359.97438 * 20 15 13 23 23 H 1.08999 * 109.46927 * 298.61745 * 1 2 3 24 24 H 1.08994 * 109.46901 * 178.61949 * 1 2 3 25 25 H 1.08997 * 109.47241 * 58.61357 * 1 2 3 26 26 H 1.08999 * 109.47228 * 120.00167 * 2 1 3 27 27 H 1.08995 * 109.46650 * 239.99957 * 2 1 3 28 28 H 0.96997 * 119.99924 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.47479 * 64.31080 * 14 13 3 30 30 H 1.09008 * 109.46930 * 184.31213 * 14 13 3 31 31 H 1.09008 * 109.47162 * 304.31203 * 14 13 3 32 32 H 1.08999 * 110.48276 * 335.78563 * 17 15 13 33 33 H 1.09009 * 110.48390 * 98.42870 * 17 15 13 34 34 H 1.08999 * 110.75356 * 279.62695 * 18 17 15 35 35 H 1.08999 * 110.75623 * 156.26069 * 18 17 15 36 36 H 1.09002 * 110.48773 * 203.37779 * 19 18 17 37 37 H 1.09008 * 110.59785 * 80.79387 * 19 18 17 38 38 H 0.96696 * 114.00590 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4108 2.0504 -0.6501 5 6 3.4601 1.4733 -0.5037 6 1 4.2492 1.8528 0.1285 7 6 3.7519 1.0168 -1.7715 8 7 2.7909 0.5550 -2.5415 9 14 5.5121 1.0542 -2.3957 10 1 6.3980 1.6162 -1.3447 11 1 5.9495 -0.3257 -2.7265 12 1 5.5881 1.9027 -3.6121 13 7 1.9936 1.9783 1.3670 14 6 2.6791 1.0817 2.3073 15 6 0.6083 2.2246 1.7891 16 1 0.1200 1.2817 2.0350 17 6 -0.1661 2.9451 0.6662 18 6 -1.0926 3.9333 1.4174 19 6 -0.1983 4.4202 2.5846 20 6 0.5879 3.1626 3.0088 21 1 0.0896 2.6748 3.8466 22 8 1.9225 3.5192 3.3746 23 1 -0.3633 0.4922 0.9021 24 1 -0.3633 -1.0273 -0.0248 25 1 -0.3633 0.5352 -0.8773 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.9961 0.2342 -3.4336 29 1 3.7385 1.0323 2.0557 30 1 2.5640 1.4629 3.3221 31 1 2.2432 0.0847 2.2421 32 1 0.5209 3.4859 0.0154 33 1 -0.7560 2.2313 0.0910 34 1 -1.9773 3.4215 1.7960 35 1 -1.3732 4.7660 0.7724 36 1 -0.8116 4.7830 3.4094 37 1 0.4836 5.2001 2.2457 38 1 1.9765 4.1098 4.1383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708560353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:01 Heat of formation + Delta-G solvation = -31.262078 kcal Electronic energy + Delta-G solvation = -17439.789670 eV Core-core repulsion = 14896.864838 eV Total energy + Delta-G solvation = -2542.924832 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17975 -36.23563 -34.30351 -32.40753 -30.69853 -28.01105 -27.30975 -26.30580 -24.00058 -22.27603 -20.68295 -19.75358 -18.35687 -16.96909 -16.23006 -15.32587 -14.99770 -14.39432 -14.10739 -13.72728 -13.42447 -12.70951 -12.44113 -11.98239 -11.90525 -11.65102 -11.24887 -11.10433 -10.95513 -10.78055 -10.70017 -10.59463 -10.27482 -10.18427 -10.17884 -9.92710 -9.46059 -9.41507 -9.26597 -8.69820 -8.20709 -6.77463 -5.90278 -3.92502 3.35945 3.43727 3.49646 4.49607 4.66101 4.92868 5.00323 5.21004 5.39982 5.43577 5.60709 5.85625 5.87058 5.91990 6.13920 6.20764 6.26733 6.28765 6.31912 6.41641 6.51210 6.57222 6.61440 6.67090 6.87429 6.95366 7.05431 7.21944 7.38806 7.62348 7.88914 7.99169 8.14378 8.35126 8.60141 8.80705 9.16410 9.71507 11.15941 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.009088 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.024553 B = 3080.264341 C = 3339.406275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.159 4.159 3 C 0.207 3.793 4 H 0.047 0.953 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.506 5.506 14 C 0.037 3.963 15 C 0.081 3.919 16 H 0.047 0.953 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.153 4.153 20 C 0.106 3.894 21 H 0.041 0.959 22 O -0.530 6.530 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.257 0.743 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.014 0.986 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 4.004 9.381 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.198 4.198 3 C 0.101 3.899 4 H 0.065 0.935 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.229 5.229 14 C -0.111 4.111 15 C -0.028 4.028 16 H 0.065 0.935 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.191 4.191 20 C 0.046 3.954 21 H 0.059 0.941 22 O -0.332 6.332 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.438 3.995 8.680 11.522 hybrid contribution 0.250 -0.533 0.004 0.589 sum -6.188 3.463 8.685 11.212 Atomic orbital electron populations 1.22261 0.99494 0.99115 1.00521 1.22310 0.92300 1.02839 1.02351 1.19500 0.96864 0.89483 0.84032 0.93525 1.21231 0.93362 1.39457 0.98793 0.92079 1.24924 0.96980 0.95801 0.96864 1.69931 1.31307 1.43322 1.08930 0.86529 0.85345 0.77350 0.78718 1.19803 1.21350 1.21241 1.62300 1.10341 1.46623 1.03631 1.22281 0.99788 0.93479 0.95573 1.22445 0.92060 0.95370 0.92950 0.93540 1.22699 0.97632 0.98121 0.97637 1.22400 0.97564 0.99129 0.97048 1.23072 0.98878 0.98847 0.98263 1.22547 0.82906 0.94108 0.95811 0.94068 1.86923 1.25900 1.68924 1.51429 0.93364 0.95421 0.93270 0.94432 0.88702 0.93311 0.91844 0.92879 0.96777 0.89657 0.91087 0.92115 0.91746 0.92552 0.90514 0.80129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.23 37.16 0.31 -2.91 16 2 C -0.16 -3.82 5.12 -26.73 -0.14 -3.95 16 3 C 0.21 5.21 1.68 -68.87 -0.12 5.10 16 4 H 0.05 1.27 5.49 -51.93 -0.29 0.98 16 5 C -0.49 -13.72 8.04 -34.44 -0.28 -14.00 16 6 H 0.06 1.76 7.22 -52.49 -0.38 1.38 16 7 C 0.05 1.52 5.17 -17.82 -0.09 1.43 16 8 N -0.89 -25.67 11.40 55.43 0.63 -25.04 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.51 -11.20 3.91 -226.95 -0.89 -12.09 16 14 C 0.04 0.78 8.45 60.07 0.51 1.29 16 15 C 0.08 1.50 1.86 -66.60 -0.12 1.38 16 16 H 0.05 0.87 5.50 -51.93 -0.29 0.59 16 17 C -0.12 -2.18 4.55 -25.07 -0.11 -2.29 16 18 C -0.12 -1.70 6.91 -24.74 -0.17 -1.88 16 19 C -0.15 -2.04 6.56 -25.08 -0.16 -2.21 16 20 C 0.11 1.64 3.95 -25.62 -0.10 1.54 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 O -0.53 -8.60 10.36 -35.23 -0.36 -8.97 16 23 H 0.05 0.90 3.79 -51.93 -0.20 0.71 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.03 7.36 -51.93 -0.38 0.65 16 26 H 0.04 0.88 5.19 -51.93 -0.27 0.61 16 27 H 0.09 2.59 5.82 -51.93 -0.30 2.29 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.06 1.43 7.10 -51.93 -0.37 1.06 16 30 H 0.05 1.01 6.17 -51.92 -0.32 0.69 16 31 H 0.01 0.30 5.54 -51.92 -0.29 0.01 16 32 H 0.08 1.75 6.87 -51.93 -0.36 1.39 16 33 H 0.07 1.26 5.56 -51.92 -0.29 0.97 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.10 8.08 -51.92 -0.42 0.68 16 38 H 0.35 3.99 9.11 45.56 0.42 4.41 16 LS Contribution 274.84 15.07 4.14 4.14 Total: -1.00 -29.80 274.84 -6.96 -36.76 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.97 Total: 4.86 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.48 Total: -16.51 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.26 Total: -37.13 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.36 Total: -8.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.80 -6.96 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708560353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.495 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds