Wall clock time and date at job start Mon Mar 30 2020 03:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 H 1.09004 * 109.47426 * 320.75953 * 3 2 1 5 5 C 1.50702 * 109.47152 * 200.76302 * 3 2 1 6 6 H 1.08000 * 120.00257 * 240.00092 * 5 3 2 7 7 C 1.37876 * 120.00161 * 59.99805 * 5 3 2 8 8 N 1.31520 * 119.99724 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00484 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46749 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47287 * 119.99681 * 9 7 5 12 12 H 1.48505 * 109.47253 * 240.00307 * 9 7 5 13 13 N 1.46898 * 109.47378 * 80.76017 * 3 2 1 14 14 C 1.46901 * 110.99648 * 52.21074 * 13 3 2 15 15 C 1.46897 * 111.00137 * 288.25566 * 13 3 2 16 16 H 1.09001 * 110.01348 * 75.86664 * 15 13 3 17 17 C 1.54266 * 110.03274 * 314.42176 * 15 13 3 18 18 C 1.54890 * 104.19622 * 217.10504 * 17 15 13 19 19 C 1.54886 * 102.74710 * 37.94323 * 18 17 15 20 20 C 1.53875 * 110.03227 * 197.25780 * 15 13 3 21 21 H 1.08997 * 110.03268 * 238.62093 * 20 15 13 22 22 O 1.42903 * 110.03433 * 359.97438 * 20 15 13 23 23 H 1.08999 * 109.46927 * 298.61745 * 1 2 3 24 24 H 1.08994 * 109.46901 * 178.61949 * 1 2 3 25 25 H 1.08997 * 109.47241 * 58.61357 * 1 2 3 26 26 H 1.08999 * 109.47228 * 120.00167 * 2 1 3 27 27 H 1.08995 * 109.46650 * 239.99957 * 2 1 3 28 28 H 0.96997 * 119.99924 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.47479 * 64.31080 * 14 13 3 30 30 H 1.09008 * 109.46930 * 184.31213 * 14 13 3 31 31 H 1.09008 * 109.47162 * 304.31203 * 14 13 3 32 32 H 1.08999 * 110.48276 * 335.78563 * 17 15 13 33 33 H 1.09009 * 110.48390 * 98.42870 * 17 15 13 34 34 H 1.08999 * 110.75356 * 279.62695 * 18 17 15 35 35 H 1.08999 * 110.75623 * 156.26069 * 18 17 15 36 36 H 1.09002 * 110.48773 * 203.37779 * 19 18 17 37 37 H 1.09008 * 110.59785 * 80.79387 * 19 18 17 38 38 H 0.96696 * 114.00590 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4108 2.0504 -0.6501 5 6 3.4601 1.4733 -0.5037 6 1 4.2492 1.8528 0.1285 7 6 3.7519 1.0168 -1.7715 8 7 2.7909 0.5550 -2.5415 9 14 5.5121 1.0542 -2.3957 10 1 6.3980 1.6162 -1.3447 11 1 5.9495 -0.3257 -2.7265 12 1 5.5881 1.9027 -3.6121 13 7 1.9936 1.9783 1.3670 14 6 2.6791 1.0817 2.3073 15 6 0.6083 2.2246 1.7891 16 1 0.1200 1.2817 2.0350 17 6 -0.1661 2.9451 0.6662 18 6 -1.0926 3.9333 1.4174 19 6 -0.1983 4.4202 2.5846 20 6 0.5879 3.1626 3.0088 21 1 0.0896 2.6748 3.8466 22 8 1.9225 3.5192 3.3746 23 1 -0.3633 0.4922 0.9021 24 1 -0.3633 -1.0273 -0.0248 25 1 -0.3633 0.5352 -0.8773 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.9961 0.2342 -3.4336 29 1 3.7385 1.0323 2.0557 30 1 2.5640 1.4629 3.3221 31 1 2.2432 0.0847 2.2421 32 1 0.5209 3.4859 0.0154 33 1 -0.7560 2.2313 0.0910 34 1 -1.9773 3.4215 1.7960 35 1 -1.3732 4.7660 0.7724 36 1 -0.8116 4.7830 3.4094 37 1 0.4836 5.2001 2.2457 38 1 1.9765 4.1098 4.1383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708560353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:00 Heat of formation + Delta-G solvation = -52.403252 kcal Electronic energy + Delta-G solvation = -17440.706420 eV Core-core repulsion = 14896.864838 eV Total energy + Delta-G solvation = -2543.841582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64669 -37.77735 -35.60273 -34.41169 -32.50484 -29.55508 -28.86839 -27.83121 -25.87340 -24.02905 -22.10430 -21.19091 -19.95000 -18.34145 -18.22093 -16.90648 -16.62675 -16.19278 -15.58760 -15.15900 -14.81124 -14.51635 -14.09284 -13.64454 -13.32690 -13.20712 -13.01629 -12.82078 -12.72926 -12.51616 -12.24438 -12.19689 -12.08036 -11.77827 -11.58605 -11.45389 -11.18969 -11.02466 -10.71532 -10.55806 -10.32238 -8.50789 -8.05386 -6.14547 1.39025 1.41048 1.53101 2.44990 3.21901 3.37137 3.72859 3.74092 3.85647 4.26814 4.39859 4.44225 4.49258 4.60730 4.64340 4.69422 4.80287 4.84012 4.86695 5.01751 5.08156 5.12799 5.20771 5.23410 5.30045 5.36019 5.41994 5.49927 5.53072 5.69242 5.80238 5.96604 6.35461 6.67200 6.91128 7.03790 7.26223 7.53993 8.99255 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.009088 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.024553 B = 3080.264341 C = 3339.406275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.152 4.152 3 C 0.215 3.785 4 H 0.021 0.979 5 C -0.510 4.510 6 H 0.045 0.955 7 C 0.010 3.990 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.519 5.519 14 C 0.046 3.954 15 C 0.072 3.928 16 H 0.049 0.951 17 C -0.125 4.125 18 C -0.115 4.115 19 C -0.144 4.144 20 C 0.108 3.892 21 H 0.068 0.932 22 O -0.557 6.557 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.258 0.742 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.013 0.987 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 4.546 11.007 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.192 4.192 3 C 0.108 3.892 4 H 0.039 0.961 5 C -0.548 4.548 6 H 0.063 0.937 7 C -0.188 4.188 8 N -0.557 5.557 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.242 5.242 14 C -0.102 4.102 15 C -0.037 4.037 16 H 0.066 0.934 17 C -0.162 4.162 18 C -0.153 4.153 19 C -0.182 4.182 20 C 0.049 3.951 21 H 0.086 0.914 22 O -0.363 6.363 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.489 4.552 10.329 13.546 hybrid contribution 0.578 -0.681 -0.475 1.011 sum -6.912 3.871 9.855 12.644 Atomic orbital electron populations 1.22125 0.96721 1.00295 1.01060 1.22134 0.94791 1.01669 1.00605 1.19217 0.94761 0.89684 0.85536 0.96118 1.21490 0.94587 1.39650 0.99122 0.93718 1.25611 1.00603 0.95505 0.97046 1.70047 1.32904 1.43658 1.09072 0.85600 0.81006 0.77521 0.78041 1.19766 1.20656 1.20733 1.62188 1.13156 1.46468 1.02377 1.22195 0.98180 0.93449 0.96395 1.22647 0.89800 0.96449 0.94787 0.93381 1.22616 0.97639 0.98643 0.97328 1.22398 0.97514 0.98475 0.96882 1.23014 0.98618 0.97494 0.99053 1.22546 0.83126 0.94440 0.95035 0.91389 1.86839 1.26575 1.69861 1.52984 0.91254 0.93758 0.94403 0.94247 0.92217 0.93257 0.94316 0.90556 0.96866 0.93513 0.91741 0.89698 0.90831 0.88974 0.91882 0.77493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 8.23 71.98 0.59 -5.30 16 2 C -0.15 -7.46 5.12 30.60 0.16 -7.31 16 3 C 0.22 11.13 1.68 44.17 0.07 11.20 16 4 H 0.02 1.19 5.49 -2.38 -0.01 1.17 16 5 C -0.51 -29.48 8.04 25.60 0.21 -29.28 16 6 H 0.04 2.67 7.22 -2.91 -0.02 2.64 16 7 C 0.01 0.59 5.17 84.65 0.44 1.02 16 8 N -0.92 -53.90 11.40 21.45 0.24 -53.66 16 9 Si 0.95 45.71 29.54 68.60 2.03 47.74 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 N -0.52 -23.09 3.91 -871.92 -3.41 -26.50 16 14 C 0.05 1.93 8.45 127.69 1.08 3.00 16 15 C 0.07 2.56 1.86 45.64 0.08 2.65 16 16 H 0.05 1.70 5.50 -2.39 -0.01 1.69 16 17 C -0.12 -4.34 4.55 31.67 0.14 -4.20 16 18 C -0.11 -2.85 6.91 31.88 0.22 -2.63 16 19 C -0.14 -3.36 6.56 31.67 0.21 -3.15 16 20 C 0.11 3.00 3.95 31.32 0.12 3.13 16 21 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 22 O -0.56 -16.81 10.36 -148.98 -1.54 -18.36 16 23 H 0.07 2.50 3.79 -2.39 -0.01 2.49 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.59 7.36 -2.39 -0.02 1.58 16 26 H 0.04 1.87 5.19 -2.39 -0.01 1.86 16 27 H 0.06 3.35 5.82 -2.39 -0.01 3.34 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.04 1.77 7.10 -2.38 -0.02 1.75 16 30 H 0.08 2.80 6.17 -2.38 -0.01 2.79 16 31 H 0.01 0.55 5.54 -2.38 -0.01 0.54 16 32 H 0.05 1.98 6.87 -2.39 -0.02 1.96 16 33 H 0.06 2.27 5.56 -2.38 -0.01 2.26 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.65 8.08 -2.38 -0.02 1.64 16 38 H 0.38 7.39 9.11 -74.06 -0.67 6.72 16 Total: -1.00 -65.66 274.84 1.03 -64.63 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.38 Total: 16.99 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.33 Total: -30.85 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.17 Total: -80.15 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.54 Total: -18.36 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -65.66 1.03 -64.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708560353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.231 kcal (2) G-P(sol) polarization free energy of solvation -65.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds