Wall clock time and date at job start Mon Mar 30 2020 03:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47149 * 2 1 4 4 H 1.09005 * 109.46826 * 56.03399 * 3 2 1 5 5 C 1.50701 * 109.46992 * 176.02797 * 3 2 1 6 6 H 1.08003 * 119.99778 * 119.99788 * 5 3 2 7 7 C 1.37878 * 120.00368 * 300.00520 * 5 3 2 8 8 N 1.31517 * 119.99894 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47462 * 59.99907 * 9 7 5 11 11 H 1.48500 * 109.47207 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47384 * 299.99606 * 9 7 5 13 13 N 1.46896 * 109.47419 * 296.03189 * 3 2 1 14 14 C 1.46898 * 111.00029 * 294.70943 * 13 3 2 15 15 C 1.46895 * 111.00331 * 170.75533 * 13 3 2 16 16 H 1.08999 * 110.54026 * 59.89960 * 15 13 3 17 17 C 1.54272 * 110.48717 * 297.29220 * 15 13 3 18 18 C 1.53870 * 106.64209 * 217.73442 * 17 15 13 19 19 C 1.54263 * 106.59905 * 359.97438 * 18 17 15 20 20 C 1.54889 * 104.19804 * 23.60893 * 19 18 17 21 21 H 1.09001 * 110.75926 * 80.37012 * 20 19 18 22 22 O 1.42894 * 110.75904 * 203.56048 * 20 19 18 23 23 H 1.08998 * 109.47553 * 175.25478 * 1 2 3 24 24 H 1.09001 * 109.47084 * 295.25746 * 1 2 3 25 25 H 1.09003 * 109.47206 * 55.25060 * 1 2 3 26 26 H 1.08998 * 109.47110 * 240.00073 * 2 1 3 27 27 H 1.09002 * 109.46740 * 119.99953 * 2 1 3 28 28 H 0.96996 * 120.00096 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47006 * 296.04920 * 14 13 3 30 30 H 1.09007 * 109.46865 * 56.04259 * 14 13 3 31 31 H 1.08998 * 109.47274 * 176.04019 * 14 13 3 32 32 H 1.09007 * 110.02894 * 98.42130 * 17 15 13 33 33 H 1.09003 * 110.03124 * 337.04444 * 17 15 13 34 34 H 1.09004 * 110.03111 * 119.26226 * 18 17 15 35 35 H 1.09002 * 110.03035 * 240.69141 * 18 17 15 36 36 H 1.08992 * 110.48950 * 142.28911 * 19 18 17 37 37 H 1.09009 * 110.48436 * 264.80016 * 19 18 17 38 38 H 0.96700 * 114.00133 * 298.54610 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6197 1.9764 0.8524 5 6 3.5438 1.4436 0.0984 6 1 4.1359 1.8928 -0.6852 7 6 4.1638 0.8710 1.1887 8 7 3.4428 0.3243 2.1432 9 14 6.0277 0.8718 1.3103 10 1 6.5233 2.2717 1.3100 11 1 6.4421 0.1998 2.5680 12 1 6.5999 0.1440 0.1492 13 7 1.6302 2.1068 -1.2444 14 6 2.2795 1.4901 -2.4089 15 6 1.9088 3.5480 -1.1883 16 1 2.9740 3.7262 -1.0417 17 6 1.0903 4.2127 -0.0621 18 6 0.6497 5.5889 -0.5909 19 6 1.2161 5.7137 -2.0204 20 6 1.4148 4.2479 -2.4796 21 1 0.4714 3.8169 -2.8150 22 8 2.4002 4.1695 -3.5114 23 1 -0.3634 -1.0241 -0.0850 24 1 -0.3633 0.4385 0.9294 25 1 -0.3634 0.5858 -0.8444 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.8789 -0.0788 2.9100 29 1 3.3578 1.6353 -2.3428 30 1 2.0570 0.4232 -2.4262 31 1 1.9055 1.9542 -3.3215 32 1 1.7090 4.3349 0.8269 33 1 0.2160 3.6054 0.1724 34 1 -0.4385 5.6492 -0.6139 35 1 1.0546 6.3790 0.0415 36 1 0.5045 6.2237 -2.6695 37 1 2.1684 6.2442 -2.0084 38 1 2.1703 4.6593 -4.3129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708721996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:05 Heat of formation + Delta-G solvation = -78.955095 kcal Electronic energy + Delta-G solvation = -17234.857636 eV Core-core repulsion = 14689.864680 eV Total energy + Delta-G solvation = -2544.992957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31179 -37.82427 -35.85468 -34.37391 -32.84937 -29.15134 -28.80975 -27.86590 -25.92866 -24.16331 -21.56934 -21.22264 -20.42233 -18.29012 -18.19871 -17.24245 -16.60299 -15.91813 -15.57745 -15.07357 -14.71773 -14.45907 -14.22512 -13.85226 -13.51112 -13.25778 -13.09651 -12.98231 -12.71895 -12.57901 -12.33272 -12.09383 -12.04927 -11.86911 -11.57849 -11.39949 -11.30152 -11.15710 -10.87959 -10.68198 -10.41151 -8.92261 -8.03061 -6.24484 1.34106 1.34786 1.42492 2.38593 3.14036 3.28986 3.52226 3.73370 4.00370 4.16932 4.49900 4.54671 4.59701 4.65452 4.70163 4.75864 4.84119 4.85193 4.93566 5.06850 5.09123 5.15831 5.21656 5.27981 5.35481 5.37808 5.45103 5.47971 5.53560 5.66510 5.83011 6.08132 6.23398 6.41966 6.71319 6.96968 7.05145 7.45212 8.91273 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.009867 C = 0.008823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.247004 B = 2837.013725 C = 3172.672874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 C 0.219 3.781 4 H 0.014 0.986 5 C -0.550 4.550 6 H 0.040 0.960 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.940 3.060 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.276 1.276 13 N -0.524 5.524 14 C 0.049 3.951 15 C 0.089 3.911 16 H 0.012 0.988 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.144 4.144 20 C 0.109 3.891 21 H 0.076 0.924 22 O -0.579 6.579 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.261 0.739 29 H -0.001 1.001 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 8.471 -8.195 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.112 3.888 4 H 0.032 0.968 5 C -0.590 4.590 6 H 0.058 0.942 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.202 1.202 13 N -0.247 5.247 14 C -0.100 4.100 15 C -0.020 4.020 16 H 0.030 0.970 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.182 4.182 20 C 0.051 3.949 21 H 0.094 0.906 22 O -0.387 6.387 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.018 0.982 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.727 7.943 -7.617 12.898 hybrid contribution 2.071 0.070 0.254 2.088 sum -4.656 8.013 -7.363 11.836 Atomic orbital electron populations 1.21573 0.96038 1.00014 1.00701 1.21461 0.94730 0.98306 1.00148 1.19052 0.91251 0.91479 0.87062 0.96825 1.21943 0.94492 1.37204 1.05315 0.94190 1.25542 1.01538 0.95061 0.95512 1.69977 1.36155 1.38724 1.09915 0.85892 0.81960 0.78059 0.77410 1.20369 1.20411 1.20197 1.62600 1.56450 1.01783 1.03879 1.22078 0.95757 0.98645 0.93486 1.22296 0.96346 0.88770 0.94635 0.96975 1.22005 0.99250 0.96918 0.96659 1.21995 1.01594 0.95394 0.95959 1.22941 1.01947 0.96058 0.97263 1.22816 0.90704 0.94790 0.86639 0.90635 1.86568 1.47452 1.76471 1.28230 0.93546 0.94686 0.92227 0.95353 0.92030 0.92921 0.98221 0.93082 0.90907 0.94159 0.91541 0.89748 0.91093 0.88463 0.91525 0.76002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.85 71.98 0.71 -4.38 16 2 C -0.11 -5.29 5.12 30.59 0.16 -5.13 16 3 C 0.22 11.17 1.59 44.17 0.07 11.24 16 4 H 0.01 0.78 6.85 -2.38 -0.02 0.76 16 5 C -0.55 -31.14 7.14 25.60 0.18 -30.96 16 6 H 0.04 2.35 5.86 -2.91 -0.02 2.33 16 7 C 0.02 1.32 5.29 84.65 0.45 1.77 16 8 N -0.91 -52.81 11.30 21.45 0.24 -52.56 16 9 Si 0.94 45.26 29.54 68.60 2.03 47.29 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.52 -22.79 3.87 -869.75 -3.37 -26.15 16 14 C 0.05 2.07 8.28 127.69 1.06 3.13 16 15 C 0.09 3.54 2.12 46.02 0.10 3.64 16 16 H 0.01 0.59 7.17 -2.39 -0.02 0.57 16 17 C -0.11 -3.93 5.17 31.32 0.16 -3.77 16 18 C -0.11 -2.82 6.80 31.32 0.21 -2.61 16 19 C -0.14 -3.35 6.55 31.67 0.21 -3.15 16 20 C 0.11 3.25 3.05 31.91 0.10 3.35 16 21 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 22 O -0.58 -16.92 11.81 -148.98 -1.76 -18.68 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 2.28 7.59 -2.39 -0.02 2.26 16 26 H 0.03 1.37 6.27 -2.39 -0.01 1.36 16 27 H 0.06 3.39 5.98 -2.39 -0.01 3.38 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.00 -0.04 6.32 -2.39 -0.02 -0.06 16 30 H 0.05 2.15 6.19 -2.38 -0.01 2.14 16 31 H 0.07 2.69 6.24 -2.39 -0.01 2.68 16 32 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.07 2.44 7.89 -2.39 -0.02 2.42 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.39 6.93 9.11 -74.06 -0.67 6.25 16 Total: -1.00 -63.97 287.71 0.90 -63.07 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.36 Total: 13.92 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 3.40 Total: -26.87 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -3.12 Total: -78.72 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -1.76 Total: -18.68 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -63.97 0.90 -63.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708721996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.885 kcal (2) G-P(sol) polarization free energy of solvation -63.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds