Wall clock time and date at job start Mon Mar 30 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47372 * 2 1 4 4 H 1.09003 * 109.47292 * 303.88609 * 3 2 1 5 5 C 1.50701 * 109.47315 * 183.88459 * 3 2 1 6 6 H 1.07999 * 119.99929 * 305.17157 * 5 3 2 7 7 C 1.37875 * 119.99813 * 125.17372 * 5 3 2 8 8 N 1.31517 * 120.00416 * 354.75386 * 7 5 3 9 9 Si 1.86802 * 119.99778 * 174.75285 * 7 5 3 10 10 H 1.48496 * 109.47142 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47297 * 240.00010 * 9 7 5 12 12 H 1.48503 * 109.47244 * 119.99856 * 9 7 5 13 13 N 1.46903 * 109.47296 * 63.88245 * 3 2 1 14 14 C 1.48560 * 111.00054 * 185.29555 * 13 3 2 15 15 C 1.54378 * 104.59242 * 200.96118 * 14 13 3 16 16 H 1.09000 * 110.32513 * 264.95503 * 15 14 13 17 17 C 1.53002 * 110.40996 * 142.79170 * 15 14 13 18 18 O 1.42900 * 109.47181 * 69.31348 * 17 15 14 19 19 C 1.54265 * 105.06158 * 23.85017 * 15 14 13 20 20 H 1.08999 * 110.32834 * 241.10297 * 19 15 14 21 21 C 1.53005 * 110.40906 * 118.93952 * 19 15 14 22 22 C 1.48565 * 110.99781 * 69.87548 * 13 3 2 23 23 H 1.09002 * 109.46883 * 60.00202 * 1 2 3 24 24 H 1.09000 * 109.47541 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47267 * 300.00544 * 1 2 3 26 26 H 1.09002 * 109.47267 * 239.99456 * 2 1 3 27 27 H 1.09002 * 109.46883 * 119.99798 * 2 1 3 28 28 H 0.97003 * 119.99582 * 5.24114 * 8 7 5 29 29 H 1.08999 * 110.41010 * 319.73748 * 14 13 3 30 30 H 1.08992 * 110.41184 * 82.18530 * 14 13 3 31 31 H 1.09003 * 109.46972 * 189.31094 * 17 15 14 32 32 H 1.08997 * 109.47121 * 309.31136 * 17 15 14 33 33 H 0.96697 * 114.00038 * 180.02562 * 18 17 15 34 34 H 1.09007 * 109.46983 * 302.86103 * 21 19 15 35 35 H 1.09001 * 109.47058 * 62.85854 * 21 19 15 36 36 H 1.08995 * 109.46974 * 182.85786 * 21 19 15 37 37 H 1.08998 * 110.40758 * 277.82165 * 22 13 3 38 38 H 1.08999 * 110.41367 * 40.14180 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6210 1.9761 -0.8531 5 6 3.5439 1.4435 -0.0963 6 1 4.1313 0.8880 0.6199 7 6 4.1700 2.1537 -1.0985 8 7 3.4552 2.7451 -2.0307 9 14 6.0337 2.2760 -1.1324 10 1 6.5998 1.5292 0.0195 11 1 6.4379 3.7022 -1.0438 12 1 6.5451 1.6944 -2.3995 13 7 1.6285 2.1074 1.2436 14 6 1.9961 3.5467 1.2246 15 6 2.0139 3.9632 2.7110 16 1 1.0560 4.3999 2.9934 17 6 3.1477 4.9567 2.9731 18 8 2.8473 6.2007 2.3374 19 6 2.2571 2.6547 3.4911 20 1 1.4185 2.4491 4.1563 21 6 3.5587 2.7440 4.2903 22 6 2.3657 1.5577 2.4104 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.4870 2.7463 -1.9717 29 1 2.9822 3.6813 0.7802 30 1 1.2497 4.1225 0.6774 31 1 3.2525 5.1133 4.0467 32 1 4.0795 4.5589 2.5712 33 1 3.5248 6.8795 2.4615 34 1 4.3859 2.9616 3.6144 35 1 3.4763 3.5391 5.0313 36 1 3.7413 1.7951 4.7944 37 1 1.8976 0.6360 2.7559 38 1 3.4092 1.3791 2.1509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709622047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:02 Heat of formation + Delta-G solvation = -59.332344 kcal Electronic energy + Delta-G solvation = -17273.623582 eV Core-core repulsion = 14729.481532 eV Total energy + Delta-G solvation = -2544.142050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.01526 -36.38591 -34.66252 -32.03011 -31.10195 -29.30045 -26.58379 -25.01143 -24.09691 -22.91921 -20.99000 -19.39005 -18.41240 -17.30210 -16.48544 -15.47443 -14.85626 -14.27445 -13.83292 -13.60698 -13.35325 -13.07753 -12.69467 -12.53130 -12.35388 -11.81780 -11.69250 -11.18185 -10.93767 -10.80844 -10.68060 -10.46554 -10.24227 -10.19233 -10.12032 -9.87756 -9.72651 -9.41129 -9.26115 -8.88729 -8.45859 -7.01213 -6.38040 -4.13731 3.37489 3.39689 3.52989 4.45717 4.53360 5.02842 5.18114 5.27038 5.40312 5.54471 5.68776 5.77533 5.86993 5.96453 6.07507 6.10922 6.16124 6.17779 6.26049 6.36725 6.49428 6.54680 6.70505 6.75560 6.82324 6.92904 7.00495 7.08854 7.15291 7.28894 7.42470 7.91162 8.01510 8.07152 8.40842 8.50654 8.82190 9.60883 10.96672 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.013091 C = 0.009538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.561088 B = 2138.345281 C = 2934.941899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C 0.170 3.830 4 H 0.055 0.945 5 C -0.617 4.617 6 H 0.051 0.949 7 C 0.031 3.969 8 N -0.908 5.908 9 Si 1.063 2.937 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.513 5.513 14 C 0.056 3.944 15 C -0.087 4.087 16 H 0.071 0.929 17 C 0.083 3.917 18 O -0.573 6.573 19 C -0.089 4.089 20 H 0.068 0.932 21 C -0.148 4.148 22 C 0.039 3.961 23 H 0.041 0.959 24 H 0.029 0.971 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.272 0.728 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.372 0.628 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 1.580 10.093 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C 0.063 3.937 4 H 0.073 0.927 5 C -0.656 4.656 6 H 0.070 0.930 7 C -0.176 4.176 8 N -0.545 5.545 9 Si 0.892 3.108 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.237 5.237 14 C -0.073 4.073 15 C -0.106 4.106 16 H 0.089 0.911 17 C 0.005 3.995 18 O -0.377 6.377 19 C -0.108 4.108 20 H 0.086 0.914 21 C -0.205 4.205 22 C -0.089 4.089 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.217 0.783 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.071 1.724 9.041 9.204 hybrid contribution 0.175 -0.246 0.942 0.990 sum 0.103 1.478 9.983 10.093 Atomic orbital electron populations 1.21739 0.97852 0.98885 1.01473 1.21504 0.93425 0.98955 0.99891 1.19684 0.94201 0.90774 0.89036 0.92738 1.22343 0.92404 1.33869 1.17006 0.93038 1.25760 1.06570 0.93133 0.92093 1.70781 1.08500 1.43017 1.32163 0.83638 0.74877 0.76425 0.75860 1.21553 1.21343 1.21238 1.65875 1.51366 1.01925 1.04488 1.22769 1.00974 0.90320 0.93208 1.21872 0.97523 0.93642 0.97577 0.91057 1.22493 0.98090 0.84072 0.94814 1.86517 1.49525 1.23635 1.78058 1.21852 0.97134 0.95087 0.96729 0.91351 1.21950 0.97965 1.00981 0.99642 1.23014 0.99538 0.95599 0.90752 0.94028 0.95166 0.92374 0.93264 0.93965 0.91476 0.91931 0.92480 0.94094 0.93274 0.78274 0.92195 0.93092 0.92936 0.92595 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.79 37.16 0.36 -2.37 16 2 C -0.10 -2.19 5.38 -26.73 -0.14 -2.34 16 3 C 0.17 4.16 2.09 -68.86 -0.14 4.02 16 4 H 0.05 1.49 5.62 -51.93 -0.29 1.20 16 5 C -0.62 -16.39 6.09 -34.44 -0.21 -16.60 16 6 H 0.05 1.39 6.44 -52.49 -0.34 1.06 16 7 C 0.03 0.85 5.02 -17.82 -0.09 0.76 16 8 N -0.91 -26.70 13.65 55.43 0.76 -25.94 16 9 Si 1.06 24.79 29.91 -169.99 -5.08 19.70 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.51 -11.36 4.77 -223.41 -1.06 -12.43 16 14 C 0.06 1.23 5.80 -2.18 -0.01 1.22 16 15 C -0.09 -1.57 3.32 -89.24 -0.30 -1.87 16 16 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 17 C 0.08 1.33 5.17 37.16 0.19 1.52 16 18 O -0.57 -9.33 13.55 -35.23 -0.48 -9.80 16 19 C -0.09 -1.48 3.65 -89.24 -0.33 -1.81 16 20 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 21 C -0.15 -2.10 7.91 37.16 0.29 -1.80 16 22 C 0.04 0.79 5.08 -2.18 -0.01 0.77 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.12 7.72 -51.93 -0.40 0.72 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.91 7.09 -51.93 -0.37 0.54 16 28 H 0.27 8.05 6.25 -40.82 -0.26 7.79 16 29 H 0.06 1.59 6.20 -51.93 -0.32 1.26 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.05 0.83 6.88 -51.93 -0.36 0.47 16 33 H 0.37 4.14 9.12 45.56 0.42 4.55 16 34 H 0.06 0.91 6.77 -51.93 -0.35 0.56 16 35 H 0.05 0.62 6.86 -51.93 -0.36 0.26 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.07 7.66 -51.93 -0.40 0.68 16 38 H 0.07 1.44 5.27 -51.93 -0.27 1.16 16 LS Contribution 287.94 15.07 4.34 4.34 Total: -1.00 -29.49 287.94 -7.31 -36.79 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.39 Total: 5.84 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -0.38 Total: -18.50 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.31 Total: -38.37 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.48 Total: -9.80 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.49 -7.31 -36.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709622047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.539 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds