Wall clock time and date at job start Mon Mar 30 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47372 * 2 1 4 4 H 1.09003 * 109.47292 * 303.88609 * 3 2 1 5 5 C 1.50701 * 109.47315 * 183.88459 * 3 2 1 6 6 H 1.07999 * 119.99929 * 305.17157 * 5 3 2 7 7 C 1.37875 * 119.99813 * 125.17372 * 5 3 2 8 8 N 1.31517 * 120.00416 * 354.75386 * 7 5 3 9 9 Si 1.86802 * 119.99778 * 174.75285 * 7 5 3 10 10 H 1.48496 * 109.47142 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47297 * 240.00010 * 9 7 5 12 12 H 1.48503 * 109.47244 * 119.99856 * 9 7 5 13 13 N 1.46903 * 109.47296 * 63.88245 * 3 2 1 14 14 C 1.48560 * 111.00054 * 185.29555 * 13 3 2 15 15 C 1.54378 * 104.59242 * 200.96118 * 14 13 3 16 16 H 1.09000 * 110.32513 * 264.95503 * 15 14 13 17 17 C 1.53002 * 110.40996 * 142.79170 * 15 14 13 18 18 O 1.42900 * 109.47181 * 69.31348 * 17 15 14 19 19 C 1.54265 * 105.06158 * 23.85017 * 15 14 13 20 20 H 1.08999 * 110.32834 * 241.10297 * 19 15 14 21 21 C 1.53005 * 110.40906 * 118.93952 * 19 15 14 22 22 C 1.48565 * 110.99781 * 69.87548 * 13 3 2 23 23 H 1.09002 * 109.46883 * 60.00202 * 1 2 3 24 24 H 1.09000 * 109.47541 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47267 * 300.00544 * 1 2 3 26 26 H 1.09002 * 109.47267 * 239.99456 * 2 1 3 27 27 H 1.09002 * 109.46883 * 119.99798 * 2 1 3 28 28 H 0.97003 * 119.99582 * 5.24114 * 8 7 5 29 29 H 1.08999 * 110.41010 * 319.73748 * 14 13 3 30 30 H 1.08992 * 110.41184 * 82.18530 * 14 13 3 31 31 H 1.09003 * 109.46972 * 189.31094 * 17 15 14 32 32 H 1.08997 * 109.47121 * 309.31136 * 17 15 14 33 33 H 0.96697 * 114.00038 * 180.02562 * 18 17 15 34 34 H 1.09007 * 109.46983 * 302.86103 * 21 19 15 35 35 H 1.09001 * 109.47058 * 62.85854 * 21 19 15 36 36 H 1.08995 * 109.46974 * 182.85786 * 21 19 15 37 37 H 1.08998 * 110.40758 * 277.82165 * 22 13 3 38 38 H 1.08999 * 110.41367 * 40.14180 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6210 1.9761 -0.8531 5 6 3.5439 1.4435 -0.0963 6 1 4.1313 0.8880 0.6199 7 6 4.1700 2.1537 -1.0985 8 7 3.4552 2.7451 -2.0307 9 14 6.0337 2.2760 -1.1324 10 1 6.5998 1.5292 0.0195 11 1 6.4379 3.7022 -1.0438 12 1 6.5451 1.6944 -2.3995 13 7 1.6285 2.1074 1.2436 14 6 1.9961 3.5467 1.2246 15 6 2.0139 3.9632 2.7110 16 1 1.0560 4.3999 2.9934 17 6 3.1477 4.9567 2.9731 18 8 2.8473 6.2007 2.3374 19 6 2.2571 2.6547 3.4911 20 1 1.4185 2.4491 4.1563 21 6 3.5587 2.7440 4.2903 22 6 2.3657 1.5577 2.4104 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.4870 2.7463 -1.9717 29 1 2.9822 3.6813 0.7802 30 1 1.2497 4.1225 0.6774 31 1 3.2525 5.1133 4.0467 32 1 4.0795 4.5589 2.5712 33 1 3.5248 6.8795 2.4615 34 1 4.3859 2.9616 3.6144 35 1 3.4763 3.5391 5.0313 36 1 3.7413 1.7951 4.7944 37 1 1.8976 0.6360 2.7559 38 1 3.4092 1.3791 2.1509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709622047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:02 Heat of formation + Delta-G solvation = -80.861930 kcal Electronic energy + Delta-G solvation = -17274.557175 eV Core-core repulsion = 14729.481532 eV Total energy + Delta-G solvation = -2545.075643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61101 -37.85392 -36.25935 -34.03451 -32.68060 -30.78859 -28.36236 -26.56412 -25.78459 -24.65242 -22.65215 -21.26897 -19.86180 -18.78505 -18.26363 -16.89829 -16.63965 -15.76227 -15.72231 -15.41357 -14.84915 -14.62697 -14.46142 -14.10534 -13.69492 -13.31199 -13.08527 -12.88217 -12.65243 -12.57661 -12.42606 -12.14346 -12.00347 -11.65609 -11.56652 -11.52254 -11.21151 -11.18700 -10.90592 -10.69948 -10.56142 -8.92754 -8.55717 -6.33046 1.45859 1.53458 1.68778 2.51088 3.12582 3.32429 3.56434 3.75900 3.94758 4.14608 4.33540 4.37218 4.48191 4.52677 4.54244 4.65777 4.72235 4.73262 4.75559 4.82521 4.96535 5.07079 5.11839 5.14311 5.23934 5.28392 5.36531 5.37461 5.48880 5.54757 5.59158 6.00678 6.04452 6.39476 6.54905 6.64944 6.93215 7.48829 8.76032 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.013091 C = 0.009538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.561088 B = 2138.345281 C = 2934.941899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C 0.169 3.831 4 H 0.018 0.982 5 C -0.611 4.611 6 H 0.047 0.953 7 C -0.018 4.018 8 N -0.938 5.938 9 Si 1.104 2.896 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.511 5.511 14 C 0.059 3.941 15 C -0.084 4.084 16 H 0.076 0.924 17 C 0.087 3.913 18 O -0.595 6.595 19 C -0.080 4.080 20 H 0.090 0.910 21 C -0.143 4.143 22 C 0.039 3.961 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.257 0.743 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.393 0.607 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 1.326 12.656 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 C 0.062 3.938 4 H 0.036 0.964 5 C -0.650 4.650 6 H 0.065 0.935 7 C -0.218 4.218 8 N -0.577 5.577 9 Si 0.927 3.073 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.234 5.234 14 C -0.070 4.070 15 C -0.103 4.103 16 H 0.095 0.905 17 C 0.010 3.990 18 O -0.404 6.404 19 C -0.099 4.099 20 H 0.108 0.892 21 C -0.200 4.200 22 C -0.090 4.090 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.243 0.757 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.298 1.468 11.628 11.724 hybrid contribution 0.003 -0.176 0.159 0.237 sum 0.301 1.293 11.787 11.861 Atomic orbital electron populations 1.21613 0.95372 1.00701 1.01133 1.21399 0.95633 0.96914 0.99421 1.19593 0.93119 0.92036 0.89057 0.96358 1.22549 0.93601 1.32696 1.16185 0.93509 1.27011 1.10130 0.92730 0.91908 1.70899 1.07740 1.45294 1.33723 0.83118 0.70628 0.76878 0.76681 1.19485 1.20875 1.20749 1.65788 1.51498 1.01929 1.04231 1.22654 0.97896 0.90322 0.96115 1.21874 0.98935 0.95179 0.94311 0.90512 1.22441 0.96253 0.83516 0.96803 1.86463 1.50985 1.24341 1.78572 1.21845 0.99592 0.92516 0.95956 0.89156 1.21916 0.95658 1.02896 0.99575 1.23065 0.97703 0.97367 0.90829 0.94795 0.92215 0.92261 0.94763 0.93262 0.93067 0.95678 0.94797 0.90269 0.94664 0.75735 0.93669 0.90221 0.91554 0.91534 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.79 71.98 0.70 -4.20 16 2 C -0.10 -4.22 5.38 30.59 0.16 -4.05 16 3 C 0.17 8.56 2.09 44.17 0.09 8.65 16 4 H 0.02 1.06 5.62 -2.39 -0.01 1.05 16 5 C -0.61 -33.25 6.09 25.60 0.16 -33.09 16 6 H 0.05 2.56 6.44 -2.91 -0.02 2.54 16 7 C -0.02 -1.02 5.02 84.65 0.42 -0.60 16 8 N -0.94 -57.43 13.65 21.45 0.29 -57.14 16 9 Si 1.10 50.38 29.91 68.60 2.05 52.43 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.51 -22.86 4.77 -860.73 -4.10 -26.96 16 14 C 0.06 2.67 5.80 86.45 0.50 3.17 16 15 C -0.08 -2.90 3.32 -9.90 -0.03 -2.93 16 16 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 17 C 0.09 2.61 5.17 71.98 0.37 2.98 16 18 O -0.60 -18.55 13.55 -148.98 -2.02 -20.57 16 19 C -0.08 -2.45 3.65 -9.90 -0.04 -2.49 16 20 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 21 C -0.14 -3.54 7.91 71.98 0.57 -2.97 16 22 C 0.04 1.49 5.08 86.45 0.44 1.93 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.06 2.20 7.72 -2.39 -0.02 2.18 16 26 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 2.08 7.09 -2.39 -0.02 2.06 16 28 H 0.26 16.14 6.25 -92.71 -0.58 15.56 16 29 H 0.02 1.32 6.20 -2.39 -0.01 1.31 16 30 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.79 6.57 -2.39 -0.02 1.77 16 32 H 0.04 1.15 6.88 -2.39 -0.02 1.13 16 33 H 0.39 8.04 9.12 -74.06 -0.68 7.37 16 34 H 0.04 1.26 6.77 -2.38 -0.02 1.24 16 35 H 0.08 1.53 6.86 -2.39 -0.02 1.52 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 2.42 7.66 -2.39 -0.02 2.40 16 38 H 0.04 1.79 5.27 -2.39 -0.01 1.78 16 Total: -1.00 -65.74 287.94 0.13 -65.61 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.55 Total: 20.22 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.36 Total: -33.59 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -3.81 Total: -84.10 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -2.02 Total: -20.57 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Total: -65.74 0.13 -65.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709622047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.255 kcal (2) G-P(sol) polarization free energy of solvation -65.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds