Wall clock time and date at job start Mon Mar 30 2020 03:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46904 * 109.46661 * 65.00378 * 3 2 1 14 14 C 1.47443 * 110.99897 * 69.87409 * 13 3 2 15 15 C 1.54324 * 107.23377 * 123.25643 * 14 13 3 16 16 H 1.09003 * 110.70383 * 263.72686 * 15 14 13 17 17 C 1.52998 * 110.70594 * 140.66298 * 15 14 13 18 18 C 1.55142 * 103.01817 * 22.28100 * 15 14 13 19 19 H 1.08999 * 110.98718 * 82.43523 * 18 15 14 20 20 C 1.53001 * 110.99216 * 206.25547 * 18 15 14 21 21 O 1.42893 * 109.46990 * 185.00337 * 20 18 15 22 22 C 1.47839 * 110.99771 * 190.71587 * 13 3 2 23 23 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 25 25 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 26 26 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 27 27 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.89113 * 242.66033 * 14 13 3 30 30 H 1.09000 * 109.88830 * 3.85201 * 14 13 3 31 31 H 1.09002 * 109.46903 * 61.45567 * 17 15 14 32 32 H 1.09003 * 109.47125 * 181.45380 * 17 15 14 33 33 H 1.08998 * 109.47278 * 301.46001 * 17 15 14 34 34 H 1.08998 * 109.46975 * 304.99960 * 20 18 15 35 35 H 1.09002 * 109.47039 * 65.00087 * 20 18 15 36 36 H 0.96701 * 114.00222 * 180.02562 * 21 20 18 37 37 H 1.09003 * 110.37510 * 332.46491 * 22 13 3 38 38 H 1.09000 * 110.37658 * 94.80887 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5981 1.5571 -0.2002 11 1 6.5007 -0.5042 -1.4742 12 1 6.3938 1.6330 -2.6150 13 7 1.6514 2.0992 1.2553 14 6 2.4043 1.5461 2.3960 15 6 3.1301 2.7243 3.0792 16 1 4.1576 2.8021 2.7239 17 6 3.0961 2.5713 4.6011 18 6 2.2966 3.9543 2.6328 19 1 1.4147 4.0773 3.2615 20 6 3.1498 5.2244 2.6346 21 8 2.3258 6.3521 2.3327 22 6 1.8982 3.5554 1.1900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.8287 -0.0519 -2.9548 29 1 1.7182 1.0750 3.0998 30 1 3.1330 0.8174 2.0410 31 1 3.6126 1.6546 4.8858 32 1 3.5907 3.4256 5.0634 33 1 2.0607 2.5246 4.9386 34 1 3.6015 5.3573 3.6176 35 1 3.9344 5.1360 1.8831 36 1 2.8016 7.1938 2.3163 37 1 2.7123 3.7716 0.4981 38 1 0.9923 4.0807 0.8875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709622048.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:04 Heat of formation + Delta-G solvation = -82.815339 kcal Electronic energy + Delta-G solvation = -17033.624205 eV Core-core repulsion = 14488.463855 eV Total energy + Delta-G solvation = -2545.160349 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49618 -37.71885 -36.11186 -33.84046 -32.43722 -31.04964 -28.55597 -26.84382 -25.82504 -24.07895 -22.15193 -21.25610 -20.35919 -18.51301 -18.06377 -17.26067 -16.51058 -15.98079 -15.27450 -14.95166 -14.75560 -14.46141 -14.42257 -13.94985 -13.55836 -13.39817 -13.20881 -12.92188 -12.76957 -12.54725 -12.36249 -12.22835 -11.92946 -11.73840 -11.51214 -11.48694 -11.33395 -11.28267 -10.92901 -10.77937 -10.43672 -8.90516 -8.02608 -6.23841 1.35193 1.38005 1.47277 2.39548 3.15717 3.25468 3.58441 3.82121 3.86199 4.17285 4.41494 4.47124 4.57361 4.60176 4.69930 4.72910 4.75515 4.82117 4.91741 4.95489 5.06109 5.14415 5.15516 5.24009 5.32474 5.36739 5.43254 5.51634 5.59450 5.66043 5.78923 6.07591 6.19897 6.43375 6.63087 6.94516 6.98010 7.45834 8.93486 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.010121 C = 0.008527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.581792 B = 2765.993881 C = 3282.997304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.214 3.786 4 H -0.005 1.005 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.532 5.532 14 C 0.054 3.946 15 C -0.098 4.098 16 H 0.061 0.939 17 C -0.130 4.130 18 C -0.083 4.083 19 H 0.086 0.914 20 C 0.092 3.908 21 O -0.589 6.589 22 C 0.059 3.941 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.395 0.605 37 H 0.025 0.975 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 6.458 11.176 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.107 3.893 4 H 0.013 0.987 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.255 5.255 14 C -0.075 4.075 15 C -0.118 4.118 16 H 0.080 0.920 17 C -0.188 4.188 18 C -0.102 4.102 19 H 0.104 0.896 20 C 0.014 3.986 21 O -0.397 6.397 22 C -0.069 4.069 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.244 0.756 37 H 0.044 0.956 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.430 5.801 11.031 12.471 hybrid contribution 2.262 0.346 -0.990 2.494 sum 1.833 6.148 10.041 11.915 Atomic orbital electron populations 1.21570 0.96503 0.99791 1.00494 1.21399 0.94387 0.98166 1.00193 1.19199 0.92138 0.91499 0.86493 0.98718 1.22029 0.93639 1.37358 1.05111 0.92609 1.25656 1.01824 0.95110 0.95612 1.70022 1.36217 1.39301 1.09746 0.85689 0.81444 0.77714 0.77909 1.19230 1.20650 1.21004 1.63820 1.54326 1.02798 1.04571 1.22759 0.95528 0.96869 0.92298 1.22281 0.98248 0.93847 0.97399 0.92048 1.21694 1.02426 1.02285 0.92350 1.22274 0.98746 0.93259 0.95916 0.89561 1.22082 0.91849 0.85143 0.99511 1.86456 1.40243 1.18639 1.94359 1.22808 0.98538 0.89203 0.96392 0.93427 0.92574 0.95116 0.91992 0.95075 0.93039 0.91461 0.93473 0.92089 0.91262 0.91991 0.91226 0.94536 0.75555 0.95608 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 9.80 71.98 0.71 -4.58 16 2 C -0.10 -5.06 5.21 30.60 0.16 -4.90 16 3 C 0.21 11.01 1.62 44.17 0.07 11.08 16 4 H -0.01 -0.30 8.07 -2.39 -0.02 -0.32 16 5 C -0.54 -29.30 6.24 25.60 0.16 -29.14 16 6 H 0.06 2.98 6.22 -2.91 -0.02 2.96 16 7 C 0.02 0.96 5.30 84.65 0.45 1.41 16 8 N -0.91 -52.76 11.30 21.45 0.24 -52.51 16 9 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.53 -23.32 4.58 -864.72 -3.96 -27.28 16 14 C 0.05 2.07 4.93 86.65 0.43 2.50 16 15 C -0.10 -3.11 2.79 -9.61 -0.03 -3.14 16 16 H 0.06 2.09 7.63 -2.39 -0.02 2.08 16 17 C -0.13 -3.06 9.13 71.98 0.66 -2.40 16 18 C -0.08 -2.65 2.74 -9.41 -0.03 -2.68 16 19 H 0.09 2.70 8.04 -2.39 -0.02 2.68 16 20 C 0.09 2.46 6.50 71.98 0.47 2.93 16 21 O -0.59 -15.37 13.62 -148.98 -2.03 -17.40 16 22 C 0.06 2.41 5.91 86.78 0.51 2.92 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 3.42 5.96 -2.39 -0.01 3.40 16 27 H 0.03 1.48 7.05 -2.39 -0.02 1.47 16 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.07 2.40 7.82 -2.39 -0.02 2.38 16 30 H 0.05 2.08 5.66 -2.39 -0.01 2.07 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.05 7.96 -2.39 -0.02 1.03 16 36 H 0.39 6.13 9.12 -74.06 -0.68 5.45 16 37 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -62.34 293.96 0.18 -62.15 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.35 Total: 15.56 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 3.56 Total: -26.00 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -3.72 Total: -79.79 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -2.03 Total: -17.40 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -62.34 0.18 -62.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709622048.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.662 kcal (2) G-P(sol) polarization free energy of solvation -62.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds