Wall clock time and date at job start Mon Mar 30 2020 03:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46781 * 2 1 4 4 H 1.08998 * 109.47515 * 305.56900 * 3 2 1 5 5 C 1.50706 * 109.46741 * 185.56672 * 3 2 1 6 6 H 1.07993 * 120.00056 * 275.00137 * 5 3 2 7 7 C 1.37878 * 119.99661 * 95.01099 * 5 3 2 8 8 N 1.31520 * 119.99664 * 184.83041 * 7 5 3 9 9 Si 1.86799 * 120.00288 * 4.82070 * 7 5 3 10 10 H 1.48497 * 109.46931 * 84.86770 * 9 7 5 11 11 H 1.48495 * 109.47245 * 204.86564 * 9 7 5 12 12 H 1.48503 * 109.47223 * 324.86803 * 9 7 5 13 13 N 1.46903 * 109.46984 * 65.57264 * 3 2 1 14 14 C 1.46903 * 110.99743 * 274.99844 * 13 3 2 15 15 C 1.53783 * 113.61187 * 252.49975 * 14 13 3 16 16 C 1.53787 * 87.07890 * 220.01768 * 15 14 13 17 17 C 1.52993 * 113.61278 * 139.97845 * 16 15 14 18 18 O 1.42905 * 109.46906 * 87.50302 * 17 16 15 19 19 C 1.42900 * 113.99965 * 179.97438 * 18 17 16 20 20 C 1.53775 * 113.61436 * 154.99865 * 14 13 3 21 21 H 1.09003 * 109.47457 * 299.99376 * 1 2 3 22 22 H 1.08999 * 109.47585 * 59.99437 * 1 2 3 23 23 H 1.09008 * 109.47085 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46738 * 240.00805 * 2 1 3 25 25 H 1.08990 * 109.47464 * 120.00367 * 2 1 3 26 26 H 0.96997 * 119.99421 * 179.97438 * 8 7 5 27 27 H 1.00899 * 110.99790 * 151.04473 * 13 3 2 28 28 H 1.08998 * 112.85005 * 23.79911 * 14 13 3 29 29 H 1.08999 * 113.61111 * 334.56362 * 15 14 13 30 30 H 1.09000 * 113.61455 * 105.47033 * 15 14 13 31 31 H 1.08998 * 113.68791 * 270.86946 * 16 15 14 32 32 H 1.09006 * 109.47111 * 207.49969 * 17 16 15 33 33 H 1.08999 * 109.47650 * 327.50391 * 17 16 15 34 34 H 1.09002 * 109.47069 * 300.00339 * 19 18 17 35 35 H 1.08998 * 109.47367 * 59.99634 * 19 18 17 36 36 H 1.08994 * 109.47440 * 180.02562 * 19 18 17 37 37 H 1.09002 * 113.61552 * 254.52535 * 20 14 13 38 38 H 1.08998 * 113.61679 * 25.43305 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5974 1.9844 -0.8359 5 6 3.5406 1.4448 -0.1378 6 1 4.1634 1.3340 0.7374 7 6 4.1184 1.5885 -1.3814 8 7 5.4235 1.4955 -1.5148 9 14 3.0476 1.9151 -2.8768 10 1 2.7814 3.3719 -2.9863 11 1 3.7485 1.4468 -4.0993 12 1 1.7617 1.1863 -2.7336 13 7 1.6630 2.0951 1.2610 14 6 0.3021 2.6428 1.1842 15 6 0.2598 4.1775 1.0954 16 6 -0.9462 4.1208 2.0479 17 6 -0.9433 5.2252 3.1066 18 8 -1.5864 6.3890 2.5828 19 6 -1.6381 7.4858 3.4973 20 6 -0.3843 2.7815 2.5532 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8932 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8898 26 1 5.8299 1.5962 -2.3898 27 1 2.3279 2.8122 1.5099 28 1 -0.3133 2.1437 0.4357 29 1 1.1345 4.6640 1.5269 30 1 0.0139 4.5507 0.1012 31 1 -1.9042 4.0273 1.5363 32 1 -1.4789 4.8815 3.9916 33 1 0.0847 5.4682 3.3755 34 1 -2.1883 7.1887 4.3902 35 1 -0.6247 7.7757 3.7748 36 1 -2.1413 8.3294 3.0249 37 1 -1.1503 2.0278 2.7360 38 1 0.3142 2.8864 3.3833 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713956013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:17 Heat of formation + Delta-G solvation = -34.743796 kcal Electronic energy + Delta-G solvation = -16281.446313 eV Core-core repulsion = 13738.370503 eV Total energy + Delta-G solvation = -2543.075811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.33178 -37.46279 -35.33982 -32.14691 -30.65217 -28.66196 -26.89072 -25.59224 -25.24319 -22.75513 -21.20059 -19.82839 -18.99320 -16.97176 -16.39448 -15.92197 -15.48577 -15.32231 -14.41712 -14.06455 -13.69856 -12.95104 -12.75124 -12.62165 -12.28472 -12.10616 -11.99797 -11.89490 -11.43362 -11.37215 -11.05036 -10.83265 -10.52010 -10.29330 -10.17115 -9.87684 -9.77479 -9.70244 -9.43593 -8.96710 -8.58048 -7.32386 -6.11348 -4.11723 3.26039 3.34916 3.37502 3.70764 4.38760 4.77709 4.87603 4.99407 5.11166 5.18955 5.22660 5.30154 5.40970 5.49818 5.52236 5.62051 5.64543 5.98913 6.03022 6.06987 6.08792 6.12740 6.21807 6.30573 6.50018 6.65845 6.69862 6.72974 7.02851 7.06673 7.12217 7.43383 7.67306 8.03610 8.44974 8.68094 8.98572 9.53553 11.01714 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.006485 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.426870 B = 4316.388788 C = 4689.910930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C 0.185 3.815 4 H 0.005 0.995 5 C -0.519 4.519 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.671 5.671 14 C 0.059 3.941 15 C -0.161 4.161 16 C -0.112 4.112 17 C 0.073 3.927 18 O -0.392 6.392 19 C 0.031 3.969 20 C -0.120 4.120 21 H 0.062 0.938 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.264 0.736 27 H 0.342 0.658 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 6.561 7.514 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.143 4.143 3 C 0.077 3.923 4 H 0.023 0.977 5 C -0.557 4.557 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.301 5.301 14 C -0.052 4.052 15 C -0.201 4.201 16 C -0.131 4.131 17 C -0.003 4.003 18 O -0.311 6.311 19 C -0.065 4.065 20 C -0.159 4.159 21 H 0.081 0.919 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.161 0.839 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.599 5.960 7.483 16.627 hybrid contribution -0.215 1.062 -1.180 1.601 sum -13.814 7.022 6.303 16.729 Atomic orbital electron populations 1.22127 0.98989 0.99842 1.00766 1.21660 0.92340 0.99440 1.00862 1.19569 0.95702 0.90806 0.86248 0.97723 1.21096 0.89326 1.50288 0.95027 0.90317 1.25021 0.94755 0.94422 0.98629 1.69907 1.09680 1.49718 1.24131 0.86913 0.81256 0.79009 0.82742 1.20331 1.21473 1.18847 1.60577 1.00792 1.33504 1.35274 1.23257 0.93491 0.91938 0.96522 1.23777 0.97619 0.99294 0.99382 1.22431 0.99270 0.94262 0.97101 1.22603 0.96199 0.85301 0.96200 1.87901 1.79705 1.22815 1.40677 1.22708 1.00466 0.89811 0.93556 1.23100 0.99245 0.94552 0.98972 0.91946 0.94342 0.94496 0.93214 0.92299 0.92603 0.83890 0.88242 0.90053 0.92039 0.88919 0.93558 0.93135 0.94352 0.94166 0.89916 0.91757 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.50 37.15 0.32 -2.55 16 2 C -0.10 -2.25 5.59 -26.73 -0.15 -2.40 16 3 C 0.19 4.30 1.85 -68.86 -0.13 4.17 16 4 H 0.01 0.12 4.99 -51.93 -0.26 -0.14 16 5 C -0.52 -14.33 8.84 -34.44 -0.30 -14.63 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 9 Si 0.87 21.55 26.99 -169.99 -4.59 16.96 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.28 6.82 56.52 0.39 -5.89 16 13 N -0.67 -13.48 6.38 -100.10 -0.64 -14.12 16 14 C 0.06 0.99 2.55 -66.90 -0.17 0.82 16 15 C -0.16 -2.52 7.25 -25.91 -0.19 -2.70 16 16 C -0.11 -1.49 4.01 -89.80 -0.36 -1.85 16 17 C 0.07 0.90 5.78 37.15 0.21 1.11 16 18 O -0.39 -5.17 10.70 -35.23 -0.38 -5.54 16 19 C 0.03 0.30 11.01 101.05 1.11 1.41 16 20 C -0.12 -1.66 7.43 -25.92 -0.19 -1.85 16 21 H 0.06 1.05 5.58 -51.93 -0.29 0.76 16 22 H 0.04 0.68 7.93 -51.93 -0.41 0.26 16 23 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.34 7.01 7.81 -39.29 -0.31 6.70 16 28 H 0.10 1.71 5.12 -51.93 -0.27 1.45 16 29 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.61 7.84 -51.93 -0.41 0.20 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -29.55 300.08 -6.81 -36.36 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.56 Total: 4.64 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 0.05 Total: -16.46 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.13 Total: -40.48 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.38 Total: -5.54 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.59 Total: 16.96 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.55 -6.81 -36.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713956013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.613 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds