Wall clock time and date at job start Mon Mar 30 2020 03:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46781 * 2 1 4 4 H 1.08998 * 109.47515 * 305.56900 * 3 2 1 5 5 C 1.50706 * 109.46741 * 185.56672 * 3 2 1 6 6 H 1.07993 * 120.00056 * 275.00137 * 5 3 2 7 7 C 1.37878 * 119.99661 * 95.01099 * 5 3 2 8 8 N 1.31520 * 119.99664 * 184.83041 * 7 5 3 9 9 Si 1.86799 * 120.00288 * 4.82070 * 7 5 3 10 10 H 1.48497 * 109.46931 * 84.86770 * 9 7 5 11 11 H 1.48495 * 109.47245 * 204.86564 * 9 7 5 12 12 H 1.48503 * 109.47223 * 324.86803 * 9 7 5 13 13 N 1.46903 * 109.46984 * 65.57264 * 3 2 1 14 14 C 1.46903 * 110.99743 * 274.99844 * 13 3 2 15 15 C 1.53783 * 113.61187 * 252.49975 * 14 13 3 16 16 C 1.53787 * 87.07890 * 220.01768 * 15 14 13 17 17 C 1.52993 * 113.61278 * 139.97845 * 16 15 14 18 18 O 1.42905 * 109.46906 * 87.50302 * 17 16 15 19 19 C 1.42900 * 113.99965 * 179.97438 * 18 17 16 20 20 C 1.53775 * 113.61436 * 154.99865 * 14 13 3 21 21 H 1.09003 * 109.47457 * 299.99376 * 1 2 3 22 22 H 1.08999 * 109.47585 * 59.99437 * 1 2 3 23 23 H 1.09008 * 109.47085 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46738 * 240.00805 * 2 1 3 25 25 H 1.08990 * 109.47464 * 120.00367 * 2 1 3 26 26 H 0.96997 * 119.99421 * 179.97438 * 8 7 5 27 27 H 1.00899 * 110.99790 * 151.04473 * 13 3 2 28 28 H 1.08998 * 112.85005 * 23.79911 * 14 13 3 29 29 H 1.08999 * 113.61111 * 334.56362 * 15 14 13 30 30 H 1.09000 * 113.61455 * 105.47033 * 15 14 13 31 31 H 1.08998 * 113.68791 * 270.86946 * 16 15 14 32 32 H 1.09006 * 109.47111 * 207.49969 * 17 16 15 33 33 H 1.08999 * 109.47650 * 327.50391 * 17 16 15 34 34 H 1.09002 * 109.47069 * 300.00339 * 19 18 17 35 35 H 1.08998 * 109.47367 * 59.99634 * 19 18 17 36 36 H 1.08994 * 109.47440 * 180.02562 * 19 18 17 37 37 H 1.09002 * 113.61552 * 254.52535 * 20 14 13 38 38 H 1.08998 * 113.61679 * 25.43305 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5974 1.9844 -0.8359 5 6 3.5406 1.4448 -0.1378 6 1 4.1634 1.3340 0.7374 7 6 4.1184 1.5885 -1.3814 8 7 5.4235 1.4955 -1.5148 9 14 3.0476 1.9151 -2.8768 10 1 2.7814 3.3719 -2.9863 11 1 3.7485 1.4468 -4.0993 12 1 1.7617 1.1863 -2.7336 13 7 1.6630 2.0951 1.2610 14 6 0.3021 2.6428 1.1842 15 6 0.2598 4.1775 1.0954 16 6 -0.9462 4.1208 2.0479 17 6 -0.9433 5.2252 3.1066 18 8 -1.5864 6.3890 2.5828 19 6 -1.6381 7.4858 3.4973 20 6 -0.3843 2.7815 2.5532 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8932 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8898 26 1 5.8299 1.5962 -2.3898 27 1 2.3279 2.8122 1.5099 28 1 -0.3133 2.1437 0.4357 29 1 1.1345 4.6640 1.5269 30 1 0.0139 4.5507 0.1012 31 1 -1.9042 4.0273 1.5363 32 1 -1.4789 4.8815 3.9916 33 1 0.0847 5.4682 3.3755 34 1 -2.1883 7.1887 4.3902 35 1 -0.6247 7.7757 3.7748 36 1 -2.1413 8.3294 3.0249 37 1 -1.1503 2.0278 2.7360 38 1 0.3142 2.8864 3.3833 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713956013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:16 Heat of formation + Delta-G solvation = -55.096348 kcal Electronic energy + Delta-G solvation = -16282.328866 eV Core-core repulsion = 13738.370503 eV Total energy + Delta-G solvation = -2543.958364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54540 -38.50835 -36.94101 -34.25094 -32.13673 -29.97826 -28.35094 -26.66740 -26.37802 -24.52541 -22.43571 -21.46995 -20.36710 -19.00209 -17.35508 -17.13212 -16.82848 -16.45051 -15.94440 -15.59478 -15.01319 -14.74944 -14.32708 -13.83359 -13.71852 -13.60499 -13.33711 -13.22724 -12.90337 -12.71640 -12.47073 -12.30582 -11.89864 -11.80781 -11.72588 -11.49896 -11.25836 -11.03487 -10.90709 -10.69357 -10.51573 -8.93358 -8.32123 -6.36359 1.29989 1.32237 1.42680 2.30687 2.83299 3.02717 3.62630 3.70735 3.76765 4.06971 4.15498 4.37107 4.45871 4.49839 4.52047 4.54688 4.60849 4.63670 4.64980 4.84937 4.85466 4.89590 4.90458 4.94206 5.14224 5.19927 5.26055 5.39328 5.40975 5.49974 5.60074 5.79887 6.10343 6.27751 6.60752 6.73543 6.89815 7.33572 8.84736 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.006485 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.426870 B = 4316.388788 C = 4689.910930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C 0.190 3.810 4 H 0.001 0.999 5 C -0.520 4.520 6 H 0.037 0.963 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.936 3.064 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.247 1.247 13 N -0.672 5.672 14 C 0.047 3.953 15 C -0.165 4.165 16 C -0.098 4.098 17 C 0.074 3.926 18 O -0.418 6.418 19 C 0.025 3.975 20 C -0.106 4.106 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.049 0.951 26 H 0.266 0.734 27 H 0.335 0.665 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 6.995 7.829 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C 0.081 3.919 4 H 0.019 0.981 5 C -0.559 4.559 6 H 0.055 0.945 7 C -0.180 4.180 8 N -0.585 5.585 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.170 1.170 13 N -0.302 5.302 14 C -0.063 4.063 15 C -0.205 4.205 16 C -0.117 4.117 17 C -0.002 4.002 18 O -0.337 6.337 19 C -0.071 4.071 20 C -0.144 4.144 21 H 0.092 0.908 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.470 6.398 7.821 19.323 hybrid contribution 0.715 0.955 -1.176 1.675 sum -15.755 7.353 6.645 18.613 Atomic orbital electron populations 1.22019 0.95520 1.01653 1.01566 1.21563 0.95428 0.97657 0.99696 1.19432 0.92610 0.92303 0.87568 0.98150 1.21355 0.91682 1.49254 0.93610 0.94512 1.25833 0.95883 0.94421 1.01848 1.70051 1.11702 1.51750 1.25002 0.85899 0.80039 0.79223 0.78784 1.19657 1.21203 1.17028 1.60552 1.02442 1.33847 1.33337 1.23445 0.91538 0.92528 0.98813 1.23767 0.98785 0.98211 0.99706 1.22325 0.98309 0.94456 0.96620 1.22578 0.96498 0.84954 0.96212 1.87853 1.79856 1.23746 1.42283 1.22907 1.01223 0.89208 0.93789 1.22987 0.99164 0.95281 0.97015 0.90756 0.93901 0.92246 0.94772 0.93217 0.92509 0.84624 0.88148 0.90629 0.92888 0.88307 0.91642 0.93290 0.92830 0.93742 0.88710 0.89975 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 8.50 71.98 0.61 -4.32 16 2 C -0.10 -4.42 5.59 30.59 0.17 -4.24 16 3 C 0.19 8.77 1.85 44.17 0.08 8.85 16 4 H 0.00 0.04 4.99 -2.39 -0.01 0.03 16 5 C -0.52 -29.55 8.84 25.60 0.23 -29.32 16 6 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 7 C 0.02 1.06 5.47 84.65 0.46 1.52 16 8 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 9 Si 0.94 44.54 26.99 68.60 1.85 46.39 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.25 -10.95 6.82 99.48 0.68 -10.27 16 13 N -0.67 -26.63 6.38 -470.59 -3.00 -29.64 16 14 C 0.05 1.49 2.55 45.44 0.12 1.61 16 15 C -0.17 -4.92 7.25 31.12 0.23 -4.69 16 16 C -0.10 -2.36 4.01 -10.27 -0.04 -2.40 16 17 C 0.07 1.61 5.78 71.98 0.42 2.02 16 18 O -0.42 -10.05 10.70 -148.98 -1.59 -11.64 16 19 C 0.02 0.41 11.01 113.37 1.25 1.66 16 20 C -0.11 -2.62 7.43 31.12 0.23 -2.39 16 21 H 0.07 2.25 5.58 -2.39 -0.01 2.24 16 22 H 0.04 1.36 7.93 -2.39 -0.02 1.35 16 23 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.34 13.91 7.81 -89.69 -0.70 13.21 16 28 H 0.10 3.18 5.12 -2.39 -0.01 3.17 16 29 H 0.08 2.32 7.58 -2.39 -0.02 2.30 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.05 1.07 7.84 -2.39 -0.02 1.06 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 Total: -1.00 -64.41 300.08 1.59 -62.82 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.29 Total: 22.45 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 3.75 Total: -31.71 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -2.70 Total: -88.31 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.59 Total: -11.64 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.85 Total: 46.39 kcal Total: -64.41 1.59 -62.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713956013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.722 kcal (2) G-P(sol) polarization free energy of solvation -64.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds