Wall clock time and date at job start Mon Mar 30 2020 03:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 H 1.08997 * 109.47211 * 54.58314 * 3 2 1 5 5 C 1.50703 * 109.46937 * 174.58287 * 3 2 1 6 6 H 1.08003 * 119.99640 * 120.00069 * 5 3 2 7 7 C 1.37869 * 120.00201 * 300.00267 * 5 3 2 8 8 N 1.31515 * 120.00052 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00300 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47071 * 89.99682 * 9 7 5 11 11 H 1.48499 * 109.47506 * 209.99872 * 9 7 5 12 12 H 1.48502 * 109.46738 * 330.00162 * 9 7 5 13 13 N 1.46900 * 109.47234 * 294.58418 * 3 2 1 14 14 C 1.46897 * 110.99896 * 152.62128 * 13 3 2 15 15 C 1.53776 * 113.61435 * 254.41034 * 14 13 3 16 16 C 1.53782 * 87.08361 * 220.01837 * 15 14 13 17 17 C 1.53001 * 113.61730 * 139.97759 * 16 15 14 18 18 O 1.42904 * 109.46607 * 87.50395 * 17 16 15 19 19 C 1.42903 * 113.99838 * 180.02562 * 18 17 16 20 20 C 1.53777 * 87.08015 * 25.43201 * 16 15 14 21 21 H 1.08998 * 109.47405 * 181.56230 * 1 2 3 22 22 H 1.09004 * 109.47158 * 301.56535 * 1 2 3 23 23 H 1.09001 * 109.47382 * 61.55718 * 1 2 3 24 24 H 1.09003 * 109.46557 * 239.99954 * 2 1 3 25 25 H 1.08997 * 109.46888 * 120.00315 * 2 1 3 26 26 H 0.96997 * 119.99971 * 180.02562 * 8 7 5 27 27 H 1.00898 * 110.99883 * 28.66544 * 13 3 2 28 28 H 1.09001 * 112.85379 * 25.71731 * 14 13 3 29 29 H 1.09004 * 113.61745 * 334.56805 * 15 14 13 30 30 H 1.09001 * 113.61787 * 105.46927 * 15 14 13 31 31 H 1.09001 * 113.69529 * 270.87293 * 16 15 14 32 32 H 1.08992 * 109.47497 * 207.50428 * 17 16 15 33 33 H 1.09005 * 109.46972 * 327.50875 * 17 16 15 34 34 H 1.09004 * 109.47456 * 300.00484 * 19 18 17 35 35 H 1.09007 * 109.47020 * 60.00114 * 19 18 17 36 36 H 1.08998 * 109.47690 * 179.97438 * 19 18 17 37 37 H 1.09003 * 113.61735 * 220.01773 * 20 16 15 38 38 H 1.08999 * 113.61588 * 89.11400 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9835 0.8375 5 6 3.5410 1.4445 0.1341 6 1 4.1516 1.8872 -0.6389 7 6 4.1348 0.8813 1.2436 8 7 3.3912 0.3426 2.1852 9 14 5.9954 0.8832 1.4096 10 1 6.4285 2.1177 2.1121 11 1 6.4242 -0.3060 2.1888 12 1 6.6128 0.8394 0.0597 13 7 1.6600 2.0962 -1.2594 14 6 1.5251 3.5478 -1.0792 15 6 0.0660 4.0328 -1.0570 16 6 0.5365 5.2385 -1.8875 17 6 -0.4431 5.6425 -2.9912 18 8 -1.4055 6.5570 -2.4625 19 6 -2.3730 6.9988 -3.4169 20 6 1.6887 4.3483 -2.3821 21 1 -0.3634 -1.0272 0.0280 22 1 -0.3634 0.5380 0.8756 23 1 -0.3634 0.4895 -0.9036 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8090 -0.0533 2.9660 27 1 0.8112 1.6976 -1.6320 28 1 2.1260 3.9296 -0.2539 29 1 -0.6207 3.3760 -1.5911 30 1 -0.2903 4.3002 -0.0622 31 1 0.8663 6.0842 -1.2840 32 1 0.1029 6.1197 -3.8049 33 1 -0.9530 4.7553 -3.3669 34 1 -1.8673 7.5040 -4.2398 35 1 -2.9229 6.1396 -3.8011 36 1 -3.0671 7.6892 -2.9378 37 1 2.6427 4.8702 -2.4570 38 1 1.4458 3.7776 -3.2784 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713956014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:18 Heat of formation + Delta-G solvation = -37.560740 kcal Electronic energy + Delta-G solvation = -16147.104295 eV Core-core repulsion = 13603.906333 eV Total energy + Delta-G solvation = -2543.197963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15612 -37.35038 -35.28664 -31.96411 -30.51240 -28.21584 -26.43855 -25.53434 -25.17240 -22.87951 -21.12048 -19.71308 -18.91706 -16.39090 -16.20393 -15.86002 -15.43881 -15.02569 -14.52214 -14.03070 -13.65865 -12.82220 -12.77221 -12.56882 -12.05171 -12.03717 -11.87370 -11.28370 -11.24970 -11.21562 -10.83653 -10.64074 -10.55955 -10.18559 -10.07324 -9.90976 -9.65075 -9.61828 -9.29159 -9.00177 -8.30968 -7.12549 -5.92316 -3.96396 3.35078 3.41586 3.46433 3.74904 4.48612 4.85323 4.96881 5.11614 5.20065 5.21908 5.34523 5.36981 5.49536 5.53247 5.58806 5.72321 5.81408 6.11080 6.18113 6.19230 6.23126 6.28615 6.42718 6.45454 6.62478 6.84872 6.90484 7.12341 7.15679 7.22418 7.56828 7.82283 7.97987 8.38232 8.45476 8.82266 9.12292 9.68684 11.12883 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036193 B = 0.005795 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.440234 B = 4830.654001 C = 5339.255415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.084 3.916 15 C -0.162 4.162 16 C -0.111 4.111 17 C 0.074 3.926 18 O -0.391 6.391 19 C 0.031 3.969 20 C -0.121 4.121 21 H 0.036 0.964 22 H 0.042 0.958 23 H 0.034 0.966 24 H 0.040 0.960 25 H 0.099 0.901 26 H 0.259 0.741 27 H 0.319 0.681 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 8.149 -8.743 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.110 3.890 4 H 0.021 0.979 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.027 4.027 15 C -0.202 4.202 16 C -0.130 4.130 17 C -0.002 4.002 18 O -0.310 6.310 19 C -0.065 4.065 20 C -0.160 4.160 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.811 8.113 -8.599 14.170 hybrid contribution 0.030 -0.027 0.332 0.335 sum -7.781 8.085 -8.267 13.938 Atomic orbital electron populations 1.21877 0.99636 0.99515 0.99645 1.21786 0.91202 1.00557 1.03019 1.19175 0.95331 0.89880 0.84574 0.97883 1.21248 0.91352 1.36190 1.04248 0.92076 1.24961 0.98038 0.95710 0.95891 1.69875 1.34650 1.39631 1.09588 0.86561 0.85917 0.77292 0.77996 1.20919 1.21426 1.19934 1.60593 1.36919 1.01174 1.31881 1.22814 0.93354 0.89902 0.96668 1.23788 0.99289 0.97215 0.99879 1.22432 0.96091 0.97366 0.97148 1.22611 0.89686 0.91710 0.96241 1.87911 1.42530 1.63733 1.36854 1.22705 0.91952 0.98854 0.93034 1.23101 0.96710 0.96808 0.99381 0.94479 0.93849 0.94693 0.94153 0.88272 0.93152 0.86281 0.88416 0.90714 0.91977 0.88784 0.93554 0.93361 0.94350 0.94293 0.89933 0.91590 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.73 37.16 0.36 -2.55 16 2 C -0.13 -3.01 5.34 -26.73 -0.14 -3.15 16 3 C 0.22 5.42 1.89 -68.86 -0.13 5.29 16 4 H 0.00 0.10 7.80 -51.93 -0.40 -0.31 16 5 C -0.49 -13.62 8.75 -34.44 -0.30 -13.92 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.67 11.29 55.43 0.63 -25.04 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.27 6.41 -100.10 -0.64 -14.91 16 14 C 0.08 1.57 3.91 -66.90 -0.26 1.31 16 15 C -0.16 -2.60 7.26 -25.92 -0.19 -2.79 16 16 C -0.11 -1.59 4.01 -89.81 -0.36 -1.95 16 17 C 0.07 0.93 5.78 37.16 0.21 1.15 16 18 O -0.39 -5.25 10.70 -35.23 -0.38 -5.63 16 19 C 0.03 0.30 11.01 101.05 1.11 1.41 16 20 C -0.12 -1.87 7.44 -25.92 -0.19 -2.06 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.03 0.61 6.51 -51.93 -0.34 0.27 16 24 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.32 6.17 5.99 -39.29 -0.24 5.94 16 28 H 0.10 2.04 7.87 -51.93 -0.41 1.63 16 29 H 0.07 1.15 7.58 -51.93 -0.39 0.75 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.58 7.84 -51.93 -0.41 0.18 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -28.79 304.84 -7.49 -36.29 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.69 Total: 3.95 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 0.02 Total: -15.86 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.02 Total: -39.95 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.38 Total: -5.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.79 -7.49 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713956014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.275 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds