Wall clock time and date at job start Mon Mar 30 2020 03:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 H 1.08997 * 109.47211 * 54.58314 * 3 2 1 5 5 C 1.50703 * 109.46937 * 174.58287 * 3 2 1 6 6 H 1.08003 * 119.99640 * 120.00069 * 5 3 2 7 7 C 1.37869 * 120.00201 * 300.00267 * 5 3 2 8 8 N 1.31515 * 120.00052 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00300 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47071 * 89.99682 * 9 7 5 11 11 H 1.48499 * 109.47506 * 209.99872 * 9 7 5 12 12 H 1.48502 * 109.46738 * 330.00162 * 9 7 5 13 13 N 1.46900 * 109.47234 * 294.58418 * 3 2 1 14 14 C 1.46897 * 110.99896 * 152.62128 * 13 3 2 15 15 C 1.53776 * 113.61435 * 254.41034 * 14 13 3 16 16 C 1.53782 * 87.08361 * 220.01837 * 15 14 13 17 17 C 1.53001 * 113.61730 * 139.97759 * 16 15 14 18 18 O 1.42904 * 109.46607 * 87.50395 * 17 16 15 19 19 C 1.42903 * 113.99838 * 180.02562 * 18 17 16 20 20 C 1.53777 * 87.08015 * 25.43201 * 16 15 14 21 21 H 1.08998 * 109.47405 * 181.56230 * 1 2 3 22 22 H 1.09004 * 109.47158 * 301.56535 * 1 2 3 23 23 H 1.09001 * 109.47382 * 61.55718 * 1 2 3 24 24 H 1.09003 * 109.46557 * 239.99954 * 2 1 3 25 25 H 1.08997 * 109.46888 * 120.00315 * 2 1 3 26 26 H 0.96997 * 119.99971 * 180.02562 * 8 7 5 27 27 H 1.00898 * 110.99883 * 28.66544 * 13 3 2 28 28 H 1.09001 * 112.85379 * 25.71731 * 14 13 3 29 29 H 1.09004 * 113.61745 * 334.56805 * 15 14 13 30 30 H 1.09001 * 113.61787 * 105.46927 * 15 14 13 31 31 H 1.09001 * 113.69529 * 270.87293 * 16 15 14 32 32 H 1.08992 * 109.47497 * 207.50428 * 17 16 15 33 33 H 1.09005 * 109.46972 * 327.50875 * 17 16 15 34 34 H 1.09004 * 109.47456 * 300.00484 * 19 18 17 35 35 H 1.09007 * 109.47020 * 60.00114 * 19 18 17 36 36 H 1.08998 * 109.47690 * 179.97438 * 19 18 17 37 37 H 1.09003 * 113.61735 * 220.01773 * 20 16 15 38 38 H 1.08999 * 113.61588 * 89.11400 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9835 0.8375 5 6 3.5410 1.4445 0.1341 6 1 4.1516 1.8872 -0.6389 7 6 4.1348 0.8813 1.2436 8 7 3.3912 0.3426 2.1852 9 14 5.9954 0.8832 1.4096 10 1 6.4285 2.1177 2.1121 11 1 6.4242 -0.3060 2.1888 12 1 6.6128 0.8394 0.0597 13 7 1.6600 2.0962 -1.2594 14 6 1.5251 3.5478 -1.0792 15 6 0.0660 4.0328 -1.0570 16 6 0.5365 5.2385 -1.8875 17 6 -0.4431 5.6425 -2.9912 18 8 -1.4055 6.5570 -2.4625 19 6 -2.3730 6.9988 -3.4169 20 6 1.6887 4.3483 -2.3821 21 1 -0.3634 -1.0272 0.0280 22 1 -0.3634 0.5380 0.8756 23 1 -0.3634 0.4895 -0.9036 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8090 -0.0533 2.9660 27 1 0.8112 1.6976 -1.6320 28 1 2.1260 3.9296 -0.2539 29 1 -0.6207 3.3760 -1.5911 30 1 -0.2903 4.3002 -0.0622 31 1 0.8663 6.0842 -1.2840 32 1 0.1029 6.1197 -3.8049 33 1 -0.9530 4.7553 -3.3669 34 1 -1.8673 7.5040 -4.2398 35 1 -2.9229 6.1396 -3.8011 36 1 -3.0671 7.6892 -2.9378 37 1 2.6427 4.8702 -2.4570 38 1 1.4458 3.7776 -3.2784 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713956014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:18 Heat of formation + Delta-G solvation = -56.071828 kcal Electronic energy + Delta-G solvation = -16147.906996 eV Core-core repulsion = 13603.906333 eV Total energy + Delta-G solvation = -2544.000664 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45206 -38.44091 -37.02277 -33.99980 -32.10146 -29.43035 -28.15194 -26.66314 -26.40349 -24.72151 -22.46226 -21.55044 -20.30873 -18.30501 -17.37749 -16.95234 -16.72218 -16.53253 -16.13651 -15.42084 -15.26816 -14.61297 -14.16797 -13.88733 -13.54855 -13.29574 -13.21642 -13.04650 -12.75798 -12.57345 -12.51441 -12.28791 -12.09214 -11.89959 -11.55107 -11.51535 -11.36985 -10.99480 -10.87851 -10.51641 -10.41761 -8.88010 -8.04503 -6.17008 1.41796 1.42705 1.53669 2.45289 2.84704 3.20008 3.68362 3.70874 3.77206 4.08456 4.25070 4.37868 4.48361 4.51677 4.54742 4.57870 4.62948 4.66621 4.71542 4.85742 4.86940 4.93027 4.94687 5.08642 5.17839 5.25601 5.30131 5.41871 5.49676 5.65393 5.78789 5.93942 6.29673 6.40131 6.58252 6.97994 7.06678 7.52524 8.98182 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036193 B = 0.005795 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.440234 B = 4830.654001 C = 5339.255415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.225 3.775 4 H -0.033 1.033 5 C -0.511 4.511 6 H 0.049 0.951 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.676 5.676 14 C 0.066 3.934 15 C -0.154 4.154 16 C -0.099 4.099 17 C 0.077 3.923 18 O -0.418 6.418 19 C 0.025 3.975 20 C -0.108 4.108 21 H 0.057 0.943 22 H 0.034 0.966 23 H 0.057 0.943 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.259 0.741 27 H 0.330 0.670 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 8.695 -10.389 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.117 3.883 4 H -0.015 1.015 5 C -0.550 4.550 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.781 3.219 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.195 1.195 13 N -0.306 5.306 14 C -0.045 4.045 15 C -0.193 4.193 16 C -0.118 4.118 17 C 0.001 3.999 18 O -0.338 6.338 19 C -0.071 4.071 20 C -0.146 4.146 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.471 8.674 -10.263 15.885 hybrid contribution 0.199 -0.160 0.846 0.884 sum -8.272 8.515 -9.416 15.152 Atomic orbital electron populations 1.21742 0.96277 1.01126 1.00402 1.21614 0.94233 0.99125 1.01182 1.18921 0.93849 0.90555 0.85014 1.01527 1.21516 0.92968 1.36299 1.04200 0.93279 1.25690 1.02296 0.95377 0.95598 1.70007 1.36232 1.40025 1.09889 0.85598 0.80824 0.77421 0.78013 1.20460 1.20836 1.19532 1.60526 1.37802 1.02480 1.29810 1.22879 0.95178 0.88651 0.97815 1.23710 0.97418 0.98185 0.99984 1.22286 0.95874 0.96383 0.97245 1.22541 0.89526 0.92338 0.95485 1.87864 1.43350 1.63968 1.38627 1.22916 0.91610 0.99599 0.93000 1.22993 0.97512 0.96247 0.97848 0.92349 0.94676 0.92371 0.94437 0.91519 0.93139 0.85076 0.91757 0.89393 0.93100 0.89229 0.91837 0.92464 0.92994 0.93358 0.88765 0.91361 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.73 71.98 0.70 -4.53 16 2 C -0.12 -5.87 5.34 30.59 0.16 -5.71 16 3 C 0.22 11.48 1.89 44.17 0.08 11.56 16 4 H -0.03 -1.88 7.80 -2.39 -0.02 -1.90 16 5 C -0.51 -29.02 8.75 25.60 0.22 -28.80 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.47 5.29 84.65 0.45 0.91 16 8 N -0.92 -53.90 11.29 21.44 0.24 -53.66 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.68 -28.50 6.41 -470.62 -3.02 -31.52 16 14 C 0.07 2.47 3.91 45.44 0.18 2.65 16 15 C -0.15 -4.79 7.26 31.12 0.23 -4.56 16 16 C -0.10 -2.67 4.01 -10.27 -0.04 -2.71 16 17 C 0.08 1.73 5.78 71.98 0.42 2.15 16 18 O -0.42 -10.24 10.70 -148.98 -1.59 -11.84 16 19 C 0.02 0.40 11.01 113.37 1.25 1.65 16 20 C -0.11 -3.16 7.44 31.12 0.23 -2.93 16 21 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.91 6.51 -2.39 -0.02 1.90 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 3.64 5.94 -2.39 -0.01 3.62 16 26 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.33 12.36 5.99 -89.70 -0.54 11.82 16 28 H 0.06 2.82 7.87 -2.39 -0.02 2.80 16 29 H 0.09 2.51 7.58 -2.39 -0.02 2.49 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.19 7.84 -2.38 -0.02 1.17 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.09 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -62.69 304.84 2.01 -60.69 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.47 Total: 19.74 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.88 Total: -30.31 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -2.78 Total: -85.18 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.59 Total: -11.84 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.69 2.01 -60.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713956014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.616 kcal (2) G-P(sol) polarization free energy of solvation -62.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds