Wall clock time and date at job start Mon Mar 30 2020 03:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47282 * 2 1 4 4 H 1.08998 * 109.47278 * 174.84225 * 3 2 1 5 5 C 1.50703 * 109.46807 * 54.83878 * 3 2 1 6 6 H 1.07995 * 120.00476 * 239.99706 * 5 3 2 7 7 C 1.37885 * 119.99785 * 60.00427 * 5 3 2 8 8 N 1.31514 * 119.99792 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99914 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46907 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47327 * 119.99821 * 9 7 5 12 12 H 1.48502 * 109.46986 * 240.00117 * 9 7 5 13 13 N 1.46898 * 109.46962 * 294.84618 * 3 2 1 14 14 C 1.46901 * 110.99734 * 273.82038 * 13 3 2 15 15 C 1.52999 * 109.47150 * 185.18622 * 14 13 3 16 16 C 1.53008 * 109.47140 * 180.02562 * 15 14 13 17 17 O 1.42894 * 109.47007 * 179.97438 * 16 15 14 18 18 C 1.42899 * 114.00183 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.50515 * 218.62416 * 18 17 16 20 20 C 1.52998 * 117.50296 * 149.99746 * 18 17 16 21 21 H 1.08999 * 109.47204 * 58.00690 * 1 2 3 22 22 H 1.08995 * 109.47403 * 178.00292 * 1 2 3 23 23 H 1.08999 * 109.47368 * 298.00757 * 1 2 3 24 24 H 1.08995 * 109.47318 * 239.99994 * 2 1 3 25 25 H 1.08995 * 109.46839 * 120.00112 * 2 1 3 26 26 H 0.97003 * 119.99623 * 180.02562 * 8 7 5 27 27 H 1.00893 * 111.00575 * 37.77402 * 13 3 2 28 28 H 1.09005 * 109.47422 * 305.18742 * 14 13 3 29 29 H 1.08999 * 109.47297 * 65.18335 * 14 13 3 30 30 H 1.09008 * 109.46976 * 299.99577 * 15 14 13 31 31 H 1.08995 * 109.47381 * 60.00175 * 15 14 13 32 32 H 1.09000 * 109.46707 * 299.99838 * 16 15 14 33 33 H 1.08995 * 109.47107 * 59.99681 * 16 15 14 34 34 H 1.09007 * 115.54444 * 4.33659 * 18 17 16 35 35 H 1.08998 * 117.49309 * 359.97438 * 19 18 17 36 36 H 1.08996 * 117.50064 * 145.02079 * 19 18 17 37 37 H 1.08994 * 117.50250 * 214.98605 * 20 18 17 38 38 H 1.09003 * 117.49620 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 0.0924 5 6 1.4360 2.1888 1.1616 6 1 0.8269 3.0628 0.9841 7 6 1.6612 1.7559 2.4512 8 7 2.4027 0.6914 2.6674 9 14 0.9131 2.6813 3.8911 10 1 0.1277 3.8350 3.3837 11 1 0.0212 1.7720 4.6543 12 1 1.9964 3.1732 4.7799 13 7 1.6546 2.0981 -1.2568 14 6 2.6464 1.8421 -2.3098 15 6 2.2802 2.6430 -3.5609 16 6 3.3130 2.3759 -4.6578 17 8 2.9706 3.1235 -5.8265 18 6 3.8768 2.9449 -6.9169 19 6 4.2124 4.1731 -7.7652 20 6 3.3123 3.0739 -8.3331 21 1 -0.3633 0.5445 -0.8716 22 1 -0.3634 -1.0270 -0.0358 23 1 -0.3634 0.4826 0.9073 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 2.5607 0.3866 3.5747 27 1 0.7338 1.8070 -1.5490 28 1 3.6336 2.1450 -1.9605 29 1 2.6562 0.7788 -2.5490 30 1 1.2931 2.3401 -3.9102 31 1 2.2706 3.7064 -3.3217 32 1 4.3002 2.6785 -4.3088 33 1 3.3222 1.3126 -4.8969 34 1 4.6681 2.2128 -6.7554 35 1 3.7416 5.1174 -7.4918 36 1 5.2247 4.2495 -8.1618 37 1 3.7324 2.4272 -9.1033 38 1 2.2495 3.2947 -8.4331 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717389783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:50 Heat of formation + Delta-G solvation = -31.138478 kcal Electronic energy + Delta-G solvation = -15584.365265 eV Core-core repulsion = 13041.445793 eV Total energy + Delta-G solvation = -2542.919472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.63779 -36.79123 -35.31029 -33.25188 -31.38236 -29.47028 -26.37070 -24.02944 -23.07540 -22.58444 -22.08428 -20.90175 -19.29325 -17.20159 -16.11165 -15.75940 -15.36032 -14.73087 -14.69291 -14.11134 -13.51484 -13.33505 -12.79757 -12.45031 -12.37442 -11.80931 -11.72439 -11.65179 -11.35897 -10.92624 -10.87856 -10.70547 -10.57217 -10.53379 -10.47796 -9.92955 -9.73177 -9.53180 -9.18524 -8.94876 -8.32672 -7.19341 -5.95497 -3.96743 3.33114 3.38968 3.41341 3.46955 3.66933 4.46702 4.62844 4.76984 4.90648 5.18041 5.21955 5.31630 5.36288 5.42808 5.48582 5.65940 5.73912 5.78273 5.93227 5.99563 6.12685 6.35990 6.37993 6.50409 6.57084 6.60547 6.91423 7.21413 7.29225 7.30990 7.51606 7.72083 7.92209 8.30927 8.57764 8.65145 9.09591 9.67008 11.11658 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051431 B = 0.004164 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.285120 B = 6723.474993 C = 6943.584577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.214 3.786 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.685 5.685 14 C 0.064 3.936 15 C -0.114 4.114 16 C 0.066 3.934 17 O -0.357 6.357 18 C 0.019 3.981 19 C -0.192 4.192 20 C -0.187 4.187 21 H 0.030 0.970 22 H 0.022 0.978 23 H 0.065 0.935 24 H 0.010 0.990 25 H 0.093 0.907 26 H 0.258 0.742 27 H 0.327 0.673 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 1.362 -16.072 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.316 5.316 14 C -0.066 4.066 15 C -0.152 4.152 16 C -0.011 4.011 17 O -0.276 6.276 18 C -0.040 4.040 19 C -0.229 4.229 20 C -0.224 4.224 21 H 0.049 0.951 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.029 0.971 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.145 0.855 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.675 1.993 -15.733 16.082 hybrid contribution -0.298 -0.744 0.614 1.010 sum 2.377 1.249 -15.118 15.355 Atomic orbital electron populations 1.21563 0.97664 0.97959 1.01315 1.22106 0.95048 1.01140 1.00213 1.19224 0.95936 0.88609 0.85580 0.94999 1.21133 1.30346 1.11440 0.89664 0.91942 1.24927 0.95600 0.95204 0.98763 1.69896 1.39216 1.24073 1.20544 0.86512 0.78948 0.79894 0.82509 1.19731 1.21258 1.21214 1.60775 1.03798 1.63292 1.03694 1.21754 0.97644 0.95901 0.91330 1.21507 0.98084 1.02512 0.93072 1.22608 0.98832 0.94628 0.85045 1.87837 1.49304 1.68567 1.21848 1.22635 0.95582 1.00107 0.85663 1.23377 1.00693 0.94958 1.03851 1.23326 1.00540 1.02504 0.96059 0.95086 0.95901 0.91573 0.97140 0.88908 0.93219 0.85506 0.91655 0.96476 0.91737 0.90451 0.93032 0.93362 0.87362 0.88170 0.88381 0.88339 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.39 37.16 0.35 -2.39 16 2 C -0.15 -3.42 5.51 -26.73 -0.15 -3.57 16 3 C 0.21 5.33 2.34 -68.86 -0.16 5.16 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.49 -13.28 7.38 -34.44 -0.25 -13.53 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.52 5.26 -17.82 -0.09 1.42 16 8 N -0.90 -25.40 11.38 55.43 0.63 -24.77 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 N -0.68 -14.60 6.21 -107.95 -0.67 -15.27 16 14 C 0.06 1.14 5.51 -3.82 -0.02 1.12 16 15 C -0.11 -1.73 5.89 -26.73 -0.16 -1.89 16 16 C 0.07 0.87 5.81 37.16 0.22 1.08 16 17 O -0.36 -4.95 10.60 -35.23 -0.37 -5.32 16 18 C 0.02 0.20 6.44 -26.73 -0.17 0.03 16 19 C -0.19 -1.78 10.48 -26.73 -0.28 -2.06 16 20 C -0.19 -1.72 10.48 -26.73 -0.28 -2.00 16 21 H 0.03 0.60 6.36 -51.93 -0.33 0.27 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 1.55 7.12 -51.93 -0.37 1.18 16 24 H 0.01 0.22 7.52 -51.93 -0.39 -0.17 16 25 H 0.09 2.45 6.22 -51.93 -0.32 2.12 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.33 6.66 6.58 -39.30 -0.26 6.40 16 28 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 29 H 0.02 0.30 7.55 -51.93 -0.39 -0.09 16 30 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.11 0.99 7.93 -51.93 -0.41 0.58 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -28.46 307.84 -8.43 -36.90 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.64 Total: 4.03 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.00 Total: -16.61 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.04 Total: -40.04 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.37 Total: -5.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.46 -8.43 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717389783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.757 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds