Wall clock time and date at job start Mon Mar 30 2020 03:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47282 * 2 1 4 4 H 1.08998 * 109.47278 * 174.84225 * 3 2 1 5 5 C 1.50703 * 109.46807 * 54.83878 * 3 2 1 6 6 H 1.07995 * 120.00476 * 239.99706 * 5 3 2 7 7 C 1.37885 * 119.99785 * 60.00427 * 5 3 2 8 8 N 1.31514 * 119.99792 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99914 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46907 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47327 * 119.99821 * 9 7 5 12 12 H 1.48502 * 109.46986 * 240.00117 * 9 7 5 13 13 N 1.46898 * 109.46962 * 294.84618 * 3 2 1 14 14 C 1.46901 * 110.99734 * 273.82038 * 13 3 2 15 15 C 1.52999 * 109.47150 * 185.18622 * 14 13 3 16 16 C 1.53008 * 109.47140 * 180.02562 * 15 14 13 17 17 O 1.42894 * 109.47007 * 179.97438 * 16 15 14 18 18 C 1.42899 * 114.00183 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.50515 * 218.62416 * 18 17 16 20 20 C 1.52998 * 117.50296 * 149.99746 * 18 17 16 21 21 H 1.08999 * 109.47204 * 58.00690 * 1 2 3 22 22 H 1.08995 * 109.47403 * 178.00292 * 1 2 3 23 23 H 1.08999 * 109.47368 * 298.00757 * 1 2 3 24 24 H 1.08995 * 109.47318 * 239.99994 * 2 1 3 25 25 H 1.08995 * 109.46839 * 120.00112 * 2 1 3 26 26 H 0.97003 * 119.99623 * 180.02562 * 8 7 5 27 27 H 1.00893 * 111.00575 * 37.77402 * 13 3 2 28 28 H 1.09005 * 109.47422 * 305.18742 * 14 13 3 29 29 H 1.08999 * 109.47297 * 65.18335 * 14 13 3 30 30 H 1.09008 * 109.46976 * 299.99577 * 15 14 13 31 31 H 1.08995 * 109.47381 * 60.00175 * 15 14 13 32 32 H 1.09000 * 109.46707 * 299.99838 * 16 15 14 33 33 H 1.08995 * 109.47107 * 59.99681 * 16 15 14 34 34 H 1.09007 * 115.54444 * 4.33659 * 18 17 16 35 35 H 1.08998 * 117.49309 * 359.97438 * 19 18 17 36 36 H 1.08996 * 117.50064 * 145.02079 * 19 18 17 37 37 H 1.08994 * 117.50250 * 214.98605 * 20 18 17 38 38 H 1.09003 * 117.49620 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 0.0924 5 6 1.4360 2.1888 1.1616 6 1 0.8269 3.0628 0.9841 7 6 1.6612 1.7559 2.4512 8 7 2.4027 0.6914 2.6674 9 14 0.9131 2.6813 3.8911 10 1 0.1277 3.8350 3.3837 11 1 0.0212 1.7720 4.6543 12 1 1.9964 3.1732 4.7799 13 7 1.6546 2.0981 -1.2568 14 6 2.6464 1.8421 -2.3098 15 6 2.2802 2.6430 -3.5609 16 6 3.3130 2.3759 -4.6578 17 8 2.9706 3.1235 -5.8265 18 6 3.8768 2.9449 -6.9169 19 6 4.2124 4.1731 -7.7652 20 6 3.3123 3.0739 -8.3331 21 1 -0.3633 0.5445 -0.8716 22 1 -0.3634 -1.0270 -0.0358 23 1 -0.3634 0.4826 0.9073 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 2.5607 0.3866 3.5747 27 1 0.7338 1.8070 -1.5490 28 1 3.6336 2.1450 -1.9605 29 1 2.6562 0.7788 -2.5490 30 1 1.2931 2.3401 -3.9102 31 1 2.2706 3.7064 -3.3217 32 1 4.3002 2.6785 -4.3088 33 1 3.3222 1.3126 -4.8969 34 1 4.6681 2.2128 -6.7554 35 1 3.7416 5.1174 -7.4918 36 1 5.2247 4.2495 -8.1618 37 1 3.7324 2.4272 -9.1033 38 1 2.2495 3.2947 -8.4331 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717389783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:50 Heat of formation + Delta-G solvation = -48.589571 kcal Electronic energy + Delta-G solvation = -15585.122001 eV Core-core repulsion = 13041.445793 eV Total energy + Delta-G solvation = -2543.676209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56453 -38.47965 -36.34751 -34.86014 -33.20783 -31.02948 -28.26051 -25.64648 -24.78869 -23.28080 -22.94026 -22.18340 -21.19842 -18.22096 -18.00419 -17.01596 -16.77300 -16.26132 -16.05717 -15.29724 -15.15033 -14.70740 -14.31624 -14.23123 -13.73317 -13.41657 -13.07923 -12.80096 -12.67095 -12.44379 -12.40512 -12.38625 -12.04762 -11.89946 -11.73691 -11.54536 -11.39158 -11.31875 -10.94342 -10.42917 -10.05596 -8.93041 -8.05050 -6.13290 1.42214 1.45070 1.56461 2.43014 2.50496 2.93010 3.23731 3.69006 3.90610 3.98322 4.09331 4.20123 4.26387 4.42002 4.50287 4.53600 4.57745 4.64429 4.70669 4.76170 4.78122 4.79475 5.01773 5.11262 5.19609 5.24333 5.25383 5.40134 5.43457 5.69278 5.75439 5.86006 6.29479 6.33674 6.69514 6.86969 6.99942 7.54645 9.00553 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051431 B = 0.004164 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.285120 B = 6723.474993 C = 6943.584577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C 0.219 3.781 4 H -0.002 1.002 5 C -0.500 4.500 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.691 5.691 14 C 0.068 3.932 15 C -0.102 4.102 16 C 0.072 3.928 17 O -0.381 6.381 18 C -0.006 4.006 19 C -0.189 4.189 20 C -0.180 4.180 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.259 0.741 27 H 0.333 0.667 28 H 0.056 0.944 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 1.305 -17.349 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.539 4.539 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.323 5.323 14 C -0.062 4.062 15 C -0.140 4.140 16 C -0.005 4.005 17 O -0.300 6.300 18 C -0.063 4.063 19 C -0.226 4.226 20 C -0.217 4.217 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.152 0.848 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.450 1.941 -17.032 17.316 hybrid contribution -0.197 -0.712 0.940 1.195 sum 2.253 1.229 -16.092 16.295 Atomic orbital electron populations 1.21456 0.95907 0.99401 1.00917 1.21955 0.96556 0.99892 0.99465 1.18986 0.93674 0.89571 0.86716 0.98385 1.21343 1.30322 1.11338 0.90926 0.93033 1.25606 0.95978 0.95935 1.01053 1.70018 1.40054 1.25106 1.20990 0.85593 0.78202 0.78812 0.79554 1.19437 1.20682 1.21017 1.60646 1.04906 1.63124 1.03597 1.21745 0.96307 0.96843 0.91332 1.21323 0.99005 1.01097 0.92609 1.22476 0.98097 0.95365 0.84560 1.87780 1.50634 1.68980 1.22593 1.22979 0.96197 1.01714 0.85443 1.23457 1.01836 0.94144 1.03146 1.23414 1.00254 1.02554 0.95513 0.93190 0.93703 0.94010 0.95473 0.91955 0.93206 0.84773 0.92565 0.95629 0.91448 0.91716 0.92453 0.92044 0.85692 0.89201 0.86271 0.86078 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.39 71.98 0.68 -4.29 16 2 C -0.14 -6.50 5.51 30.60 0.17 -6.33 16 3 C 0.22 11.00 2.34 44.17 0.10 11.10 16 4 H 0.00 -0.10 7.70 -2.39 -0.02 -0.12 16 5 C -0.50 -27.55 7.38 25.60 0.19 -27.36 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.68 5.26 84.66 0.45 1.12 16 8 N -0.92 -52.78 11.38 21.45 0.24 -52.54 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.69 -29.25 6.21 -495.44 -3.08 -32.32 16 14 C 0.07 2.36 5.51 86.30 0.48 2.84 16 15 C -0.10 -3.01 5.89 30.60 0.18 -2.83 16 16 C 0.07 1.79 5.81 71.98 0.42 2.21 16 17 O -0.38 -10.08 10.60 -148.98 -1.58 -11.65 16 18 C -0.01 -0.11 6.44 30.59 0.20 0.08 16 19 C -0.19 -3.15 10.48 30.59 0.32 -2.83 16 20 C -0.18 -2.93 10.48 30.59 0.32 -2.61 16 21 H 0.05 1.86 6.36 -2.39 -0.02 1.84 16 22 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.04 1.92 7.12 -2.39 -0.02 1.91 16 24 H 0.03 1.14 7.52 -2.39 -0.02 1.13 16 25 H 0.06 3.31 6.22 -2.39 -0.01 3.30 16 26 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.33 13.22 6.58 -89.70 -0.59 12.63 16 28 H 0.06 2.06 7.92 -2.38 -0.02 2.04 16 29 H 0.03 0.86 7.55 -2.39 -0.02 0.84 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.13 1.99 7.93 -2.38 -0.02 1.97 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -60.55 307.84 1.53 -59.02 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.42 Total: 20.27 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 3.49 Total: -28.91 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.83 Total: -84.86 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.58 Total: -11.65 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -60.55 1.53 -59.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717389783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.431 kcal (2) G-P(sol) polarization free energy of solvation -60.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds