Wall clock time and date at job start Mon Mar 30 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 H 1.08999 * 109.46535 * 306.97817 * 3 2 1 5 5 C 1.50697 * 109.47066 * 186.97857 * 3 2 1 6 6 H 1.08000 * 120.00324 * 240.00124 * 5 3 2 7 7 C 1.37875 * 120.00130 * 59.99943 * 5 3 2 8 8 N 1.31519 * 119.99955 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00173 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47062 * 269.99870 * 9 7 5 11 11 H 1.48498 * 109.47294 * 29.99754 * 9 7 5 12 12 H 1.48500 * 109.47310 * 150.00035 * 9 7 5 13 13 N 1.46898 * 109.46966 * 66.97935 * 3 2 1 14 14 C 1.47802 * 111.00380 * 47.84466 * 13 3 2 15 15 C 1.46263 * 112.31192 * 155.84732 * 14 13 3 16 16 O 1.44517 * 111.30738 * 59.49085 * 15 14 13 17 17 C 1.39903 * 112.80739 * 280.44503 * 16 15 14 18 18 H 1.09002 * 108.73335 * 333.93704 * 17 16 15 19 19 C 1.53002 * 108.73550 * 215.74172 * 17 16 15 20 20 C 1.54569 * 113.22154 * 94.90126 * 17 16 15 21 21 C 1.44018 * 110.99730 * 285.87655 * 13 3 2 22 22 H 1.08997 * 109.47506 * 287.63667 * 1 2 3 23 23 H 1.09006 * 109.46997 * 47.63828 * 1 2 3 24 24 H 1.09001 * 109.47322 * 167.63226 * 1 2 3 25 25 H 1.08998 * 109.47189 * 239.99689 * 2 1 3 26 26 H 1.09006 * 109.47093 * 119.99909 * 2 1 3 27 27 H 0.97004 * 119.99940 * 179.97438 * 8 7 5 28 28 H 1.09002 * 108.90926 * 276.57442 * 14 13 3 29 29 H 1.08994 * 108.91069 * 35.11451 * 14 13 3 30 30 H 1.08998 * 109.10631 * 179.97438 * 15 14 13 31 31 H 1.08994 * 109.10914 * 299.07483 * 15 14 13 32 32 H 1.09007 * 109.46639 * 60.00182 * 19 17 16 33 33 H 1.08999 * 109.47381 * 179.97438 * 19 17 16 34 34 H 1.09001 * 109.47376 * 300.00369 * 19 17 16 35 35 H 1.09004 * 109.19533 * 79.65309 * 20 17 16 36 36 H 1.09006 * 109.19633 * 198.96740 * 20 17 16 37 37 H 1.08996 * 108.88195 * 337.94830 * 21 13 3 38 38 H 1.08995 * 108.87591 * 96.40585 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5783 1.9910 -0.8210 5 6 3.5371 1.4459 -0.1726 6 1 4.1674 1.8816 0.5884 7 6 4.1021 0.8929 -1.3022 8 7 3.3345 0.3618 -2.2287 9 14 5.9578 0.8965 -1.5158 10 1 6.3727 2.1374 -2.2180 11 1 6.6097 0.8405 -0.1827 12 1 6.3662 -0.2855 -2.3166 13 7 1.6926 2.0847 1.2747 14 6 2.0500 1.2195 2.4185 15 6 2.2588 1.9831 3.6484 16 8 1.0713 2.7197 4.0171 17 6 0.9171 3.9017 3.2847 18 1 1.8994 4.2396 2.9546 19 6 0.3121 4.9701 4.1977 20 6 0.0068 3.7370 2.0464 21 6 0.2876 2.3961 1.3296 22 1 -0.3634 0.3113 0.9793 23 1 -0.3633 0.6925 -0.7594 24 1 -0.3634 -1.0038 -0.2201 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7320 -0.0270 -3.0236 28 1 1.2478 0.4998 2.5813 29 1 2.9651 0.6778 2.1793 30 1 2.5182 1.2970 4.4546 31 1 3.0802 2.6836 3.4984 32 1 0.9767 5.1434 5.0441 33 1 0.1870 5.8973 3.6386 34 1 -0.6580 4.6307 4.5609 35 1 -1.0362 3.7628 2.3624 36 1 0.1917 4.5582 1.3539 37 1 -0.1014 2.4514 0.3129 38 1 -0.2302 1.5972 1.8603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720458258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:21 Heat of formation + Delta-G solvation = -39.233147 kcal Electronic energy + Delta-G solvation = -17294.571469 eV Core-core repulsion = 14751.300985 eV Total energy + Delta-G solvation = -2543.270484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40389 -36.80355 -33.14166 -32.83442 -30.99546 -28.97976 -28.30880 -26.02552 -23.39312 -22.72630 -21.23149 -19.95115 -19.04071 -16.39291 -16.13857 -15.62727 -15.05967 -14.78272 -14.47301 -13.44276 -13.09558 -13.01661 -12.52712 -12.36838 -12.21570 -12.03697 -11.67617 -11.28950 -11.07304 -10.97827 -10.82622 -10.72409 -10.51153 -10.28291 -10.15627 -9.97718 -9.64794 -9.50917 -9.02145 -8.89892 -8.35196 -7.11981 -6.01886 -4.05883 3.29938 3.36661 3.39591 4.23673 4.40166 4.92581 5.24640 5.28298 5.41451 5.56367 5.70958 5.75069 5.84350 5.95740 6.03307 6.06593 6.15009 6.19026 6.21772 6.33803 6.45115 6.48069 6.48518 6.56190 6.64420 6.69463 6.88899 7.00998 7.24553 7.49949 7.71364 7.77364 7.86061 8.15596 8.40581 8.63041 9.00928 9.59201 11.04402 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031510 B = 0.008638 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.401620 B = 3240.898486 C = 3634.784385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C 0.219 3.781 4 H 0.038 0.962 5 C -0.498 4.498 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.288 1.288 13 N -0.523 5.523 14 C 0.025 3.975 15 C 0.068 3.932 16 O -0.380 6.380 17 C 0.096 3.904 18 H 0.061 0.939 19 C -0.152 4.152 20 C -0.134 4.134 21 C 0.055 3.945 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.098 0.902 26 H 0.037 0.963 27 H 0.260 0.740 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 3.804 8.579 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C 0.113 3.887 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.214 1.214 13 N -0.246 5.246 14 C -0.103 4.103 15 C -0.008 4.008 16 O -0.299 6.299 17 C 0.037 3.963 18 H 0.079 0.921 19 C -0.210 4.210 20 C -0.173 4.173 21 C -0.075 4.075 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.116 0.884 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.452 4.101 8.564 10.487 hybrid contribution 0.634 -0.775 -0.611 1.173 sum -3.818 3.325 7.953 9.428 Atomic orbital electron populations 1.22221 0.99482 0.99574 1.00189 1.22272 0.91867 1.02208 1.02923 1.19457 0.95772 0.88828 0.84667 0.94376 1.21124 0.91152 1.36898 1.04499 0.92063 1.24934 0.98050 0.95445 0.95896 1.69881 1.34595 1.39529 1.09280 0.86540 0.85614 0.77412 0.78066 1.20757 1.19975 1.21399 1.61762 1.14938 1.43954 1.03991 1.21563 1.02028 0.95116 0.91574 1.21765 0.86969 0.95526 0.96566 1.87631 1.45358 1.36285 1.60611 1.21623 0.98965 0.84954 0.90752 0.92092 1.22003 1.01255 0.97966 0.99729 1.22745 0.98641 0.99026 0.96870 1.22121 0.90862 0.95360 0.99148 0.93643 0.93674 0.94988 0.88375 0.94453 0.93006 0.95021 0.89242 0.90044 0.92593 0.92733 0.91906 0.92524 0.92616 0.91731 0.92269 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 8.52 37.16 0.32 -2.84 16 2 C -0.15 -3.57 4.83 -26.73 -0.13 -3.70 16 3 C 0.22 5.34 1.85 -68.87 -0.13 5.21 16 4 H 0.04 1.04 7.53 -51.93 -0.39 0.65 16 5 C -0.50 -13.31 7.77 -34.44 -0.27 -13.57 16 6 H 0.06 1.65 7.77 -52.49 -0.41 1.24 16 7 C 0.06 1.56 5.28 -17.82 -0.09 1.46 16 8 N -0.89 -25.02 11.29 55.43 0.63 -24.40 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.52 -11.01 4.17 -232.55 -0.97 -11.98 16 14 C 0.03 0.49 3.61 -6.53 -0.02 0.46 16 15 C 0.07 1.14 6.38 33.95 0.22 1.35 16 16 O -0.38 -6.52 9.97 -32.67 -0.33 -6.84 16 17 C 0.10 1.52 2.72 -25.91 -0.07 1.45 16 18 H 0.06 1.04 7.24 -51.93 -0.38 0.66 16 19 C -0.15 -1.94 9.38 37.16 0.35 -1.59 16 20 C -0.13 -2.16 5.88 -25.05 -0.15 -2.31 16 21 C 0.05 1.03 3.68 -4.51 -0.02 1.01 16 22 H 0.04 0.85 4.71 -51.93 -0.24 0.61 16 23 H 0.04 0.91 7.37 -51.93 -0.38 0.52 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.10 2.59 5.91 -51.93 -0.31 2.28 16 26 H 0.04 0.85 6.12 -51.93 -0.32 0.53 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.03 0.61 6.39 -51.93 -0.33 0.28 16 29 H 0.09 1.85 6.56 -51.93 -0.34 1.51 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.94 7.46 -51.93 -0.39 0.55 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.81 7.99 -51.93 -0.41 0.40 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.15 6.08 -51.93 -0.32 0.84 16 38 H 0.04 0.70 5.00 -51.93 -0.26 0.44 16 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -27.49 279.51 -7.62 -35.11 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.15 Total: 0.90 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 0.01 Total: -13.05 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.34 Total: -36.38 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.33 Total: -6.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.49 -7.62 -35.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720458258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.122 kcal (2) G-P(sol) polarization free energy of solvation -27.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds