Wall clock time and date at job start Mon Mar 30 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 H 1.08999 * 109.46535 * 306.97817 * 3 2 1 5 5 C 1.50697 * 109.47066 * 186.97857 * 3 2 1 6 6 H 1.08000 * 120.00324 * 240.00124 * 5 3 2 7 7 C 1.37875 * 120.00130 * 59.99943 * 5 3 2 8 8 N 1.31519 * 119.99955 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00173 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47062 * 269.99870 * 9 7 5 11 11 H 1.48498 * 109.47294 * 29.99754 * 9 7 5 12 12 H 1.48500 * 109.47310 * 150.00035 * 9 7 5 13 13 N 1.46898 * 109.46966 * 66.97935 * 3 2 1 14 14 C 1.47802 * 111.00380 * 47.84466 * 13 3 2 15 15 C 1.46263 * 112.31192 * 155.84732 * 14 13 3 16 16 O 1.44517 * 111.30738 * 59.49085 * 15 14 13 17 17 C 1.39903 * 112.80739 * 280.44503 * 16 15 14 18 18 H 1.09002 * 108.73335 * 333.93704 * 17 16 15 19 19 C 1.53002 * 108.73550 * 215.74172 * 17 16 15 20 20 C 1.54569 * 113.22154 * 94.90126 * 17 16 15 21 21 C 1.44018 * 110.99730 * 285.87655 * 13 3 2 22 22 H 1.08997 * 109.47506 * 287.63667 * 1 2 3 23 23 H 1.09006 * 109.46997 * 47.63828 * 1 2 3 24 24 H 1.09001 * 109.47322 * 167.63226 * 1 2 3 25 25 H 1.08998 * 109.47189 * 239.99689 * 2 1 3 26 26 H 1.09006 * 109.47093 * 119.99909 * 2 1 3 27 27 H 0.97004 * 119.99940 * 179.97438 * 8 7 5 28 28 H 1.09002 * 108.90926 * 276.57442 * 14 13 3 29 29 H 1.08994 * 108.91069 * 35.11451 * 14 13 3 30 30 H 1.08998 * 109.10631 * 179.97438 * 15 14 13 31 31 H 1.08994 * 109.10914 * 299.07483 * 15 14 13 32 32 H 1.09007 * 109.46639 * 60.00182 * 19 17 16 33 33 H 1.08999 * 109.47381 * 179.97438 * 19 17 16 34 34 H 1.09001 * 109.47376 * 300.00369 * 19 17 16 35 35 H 1.09004 * 109.19533 * 79.65309 * 20 17 16 36 36 H 1.09006 * 109.19633 * 198.96740 * 20 17 16 37 37 H 1.08996 * 108.88195 * 337.94830 * 21 13 3 38 38 H 1.08995 * 108.87591 * 96.40585 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5783 1.9910 -0.8210 5 6 3.5371 1.4459 -0.1726 6 1 4.1674 1.8816 0.5884 7 6 4.1021 0.8929 -1.3022 8 7 3.3345 0.3618 -2.2287 9 14 5.9578 0.8965 -1.5158 10 1 6.3727 2.1374 -2.2180 11 1 6.6097 0.8405 -0.1827 12 1 6.3662 -0.2855 -2.3166 13 7 1.6926 2.0847 1.2747 14 6 2.0500 1.2195 2.4185 15 6 2.2588 1.9831 3.6484 16 8 1.0713 2.7197 4.0171 17 6 0.9171 3.9017 3.2847 18 1 1.8994 4.2396 2.9546 19 6 0.3121 4.9701 4.1977 20 6 0.0068 3.7370 2.0464 21 6 0.2876 2.3961 1.3296 22 1 -0.3634 0.3113 0.9793 23 1 -0.3633 0.6925 -0.7594 24 1 -0.3634 -1.0038 -0.2201 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7320 -0.0270 -3.0236 28 1 1.2478 0.4998 2.5813 29 1 2.9651 0.6778 2.1793 30 1 2.5182 1.2970 4.4546 31 1 3.0802 2.6836 3.4984 32 1 0.9767 5.1434 5.0441 33 1 0.1870 5.8973 3.6386 34 1 -0.6580 4.6307 4.5609 35 1 -1.0362 3.7628 2.3624 36 1 0.1917 4.5582 1.3539 37 1 -0.1014 2.4514 0.3129 38 1 -0.2302 1.5972 1.8603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720458258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:21 Heat of formation + Delta-G solvation = -56.439741 kcal Electronic energy + Delta-G solvation = -17295.317603 eV Core-core repulsion = 14751.300985 eV Total energy + Delta-G solvation = -2544.016618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89741 -38.37113 -34.86493 -34.34868 -32.78041 -30.30040 -30.00925 -27.73773 -25.03950 -24.30304 -22.74739 -21.46750 -20.71550 -18.37015 -17.53916 -17.25046 -16.58430 -16.28129 -16.21879 -15.04554 -14.87640 -14.42307 -14.01700 -13.77102 -13.65169 -13.46457 -13.13407 -13.05672 -12.72253 -12.66651 -12.43760 -12.33627 -12.15723 -12.06788 -11.81082 -11.44171 -11.30254 -11.17519 -10.85963 -10.41849 -10.35147 -8.81029 -8.09246 -6.20010 1.42238 1.43392 1.53066 2.43236 2.97033 3.18738 3.33158 3.97936 4.10616 4.21554 4.32649 4.38339 4.47843 4.53577 4.59012 4.69981 4.71207 4.75638 4.87315 4.90189 4.99903 5.03386 5.09453 5.14209 5.17565 5.25789 5.28060 5.39681 5.40926 5.61444 5.74916 5.83312 6.26469 6.46376 6.52835 6.81321 6.94099 7.49149 8.95919 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031510 B = 0.008638 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.401620 B = 3240.898486 C = 3634.784385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.226 3.774 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.956 3.044 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.285 1.285 13 N -0.530 5.530 14 C 0.031 3.969 15 C 0.071 3.929 16 O -0.384 6.384 17 C 0.090 3.910 18 H 0.046 0.954 19 C -0.144 4.144 20 C -0.130 4.130 21 C 0.054 3.946 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.260 0.740 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 4.352 10.083 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.119 3.881 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.782 3.218 10 H -0.205 1.205 11 H -0.192 1.192 12 H -0.211 1.211 13 N -0.253 5.253 14 C -0.097 4.097 15 C -0.005 4.005 16 O -0.303 6.303 17 C 0.031 3.969 18 H 0.064 0.936 19 C -0.202 4.202 20 C -0.169 4.169 21 C -0.075 4.075 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.693 4.659 10.086 12.061 hybrid contribution 0.675 -0.938 -1.084 1.584 sum -4.019 3.721 9.003 10.538 Atomic orbital electron populations 1.22082 0.96907 1.00430 1.00877 1.22089 0.94144 1.01028 1.01275 1.19179 0.94448 0.89142 0.85358 0.97981 1.21386 0.92458 1.36752 1.04446 0.92721 1.25663 1.02159 0.95177 0.95680 1.70015 1.36195 1.40123 1.09616 0.85580 0.80702 0.77322 0.78146 1.20527 1.19239 1.21099 1.61740 1.16553 1.43893 1.03121 1.21565 1.00987 0.95199 0.91918 1.21750 0.86903 0.95749 0.96096 1.87635 1.45357 1.36712 1.60622 1.21756 0.98399 0.85378 0.91324 0.93626 1.21945 1.01372 0.97387 0.99448 1.22731 1.00029 0.97190 0.96924 1.22154 0.89346 0.97082 0.98931 0.92161 0.94266 0.93477 0.91569 0.94362 0.93074 0.95039 0.91114 0.87240 0.92866 0.92034 0.90279 0.91874 0.90487 0.91502 0.93515 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 8.52 71.98 0.61 -5.17 16 2 C -0.15 -6.90 4.83 30.59 0.15 -6.75 16 3 C 0.23 11.28 1.85 44.17 0.08 11.36 16 4 H 0.00 0.13 7.53 -2.39 -0.02 0.11 16 5 C -0.51 -27.85 7.77 25.60 0.20 -27.66 16 6 H 0.05 2.98 7.77 -2.91 -0.02 2.96 16 7 C 0.01 0.63 5.28 84.65 0.45 1.08 16 8 N -0.92 -52.60 11.29 21.45 0.24 -52.36 16 9 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 13 N -0.53 -22.32 4.17 -889.67 -3.71 -26.02 16 14 C 0.03 1.18 3.61 84.06 0.30 1.49 16 15 C 0.07 2.26 6.38 69.91 0.45 2.71 16 16 O -0.38 -12.27 9.97 -139.82 -1.39 -13.67 16 17 C 0.09 2.67 2.72 31.13 0.08 2.75 16 18 H 0.05 1.49 7.24 -2.39 -0.02 1.47 16 19 C -0.14 -3.23 9.38 71.98 0.68 -2.55 16 20 C -0.13 -3.96 5.88 31.68 0.19 -3.77 16 21 C 0.05 1.99 3.68 87.39 0.32 2.31 16 22 H 0.06 2.20 4.71 -2.39 -0.01 2.18 16 23 H 0.04 1.57 7.37 -2.38 -0.02 1.56 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 3.58 5.91 -2.39 -0.01 3.57 16 26 H 0.04 1.76 6.12 -2.38 -0.01 1.74 16 27 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 28 H 0.03 1.18 6.39 -2.39 -0.02 1.17 16 29 H 0.07 2.93 6.56 -2.39 -0.02 2.92 16 30 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.05 1.72 7.46 -2.39 -0.02 1.70 16 32 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 2.02 7.99 -2.38 -0.02 2.00 16 36 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.05 1.82 6.08 -2.39 -0.01 1.81 16 38 H 0.04 1.39 5.00 -2.39 -0.01 1.38 16 Total: -1.00 -58.79 279.51 1.70 -57.09 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.02 Total: 13.62 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 3.51 Total: -24.20 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -3.46 Total: -78.39 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.39 Total: -13.67 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -58.79 1.70 -57.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720458258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.653 kcal (2) G-P(sol) polarization free energy of solvation -58.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds