Wall clock time and date at job start Mon Mar 30 2020 03:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47095 * 2 1 4 4 H 1.08997 * 109.47322 * 56.66260 * 3 2 1 5 5 N 1.46900 * 109.46922 * 296.66508 * 3 2 1 6 6 C 1.46908 * 110.99884 * 294.51198 * 5 3 2 7 7 C 1.50696 * 109.47120 * 175.81736 * 6 5 3 8 8 H 1.08004 * 119.99668 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99958 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99889 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99874 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46718 * 269.99344 * 11 9 7 13 13 H 1.48489 * 109.47387 * 29.99389 * 11 9 7 14 14 H 1.48503 * 109.47098 * 149.99943 * 11 9 7 15 15 C 1.52997 * 109.47208 * 176.66105 * 3 2 1 16 16 H 1.09012 * 109.51929 * 59.87472 * 15 3 2 17 17 C 1.53175 * 109.52611 * 179.97438 * 15 3 2 18 18 C 1.53167 * 109.04081 * 176.88798 * 17 15 3 19 19 C 1.53099 * 109.16360 * 303.02191 * 18 17 15 20 20 O 1.42905 * 109.41339 * 57.60983 * 19 18 17 21 21 C 1.42910 * 114.09555 * 298.83943 * 20 19 18 22 22 H 1.08998 * 109.47151 * 56.47608 * 1 2 3 23 23 H 1.08996 * 109.47346 * 176.47636 * 1 2 3 24 24 H 1.09002 * 109.47413 * 296.47819 * 1 2 3 25 25 H 1.08998 * 109.47277 * 239.99695 * 2 1 3 26 26 H 1.09005 * 109.47171 * 119.99779 * 2 1 3 27 27 H 1.00903 * 110.99877 * 170.56556 * 5 3 2 28 28 H 1.09000 * 109.46314 * 55.82142 * 6 5 3 29 29 H 1.09002 * 109.46993 * 295.82494 * 6 5 3 30 30 H 0.97000 * 119.99869 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.54411 * 296.75834 * 17 15 3 32 32 H 1.09007 * 109.53847 * 57.01864 * 17 15 3 33 33 H 1.09003 * 109.52510 * 62.92430 * 18 17 15 34 34 H 1.09000 * 109.52634 * 183.05632 * 18 17 15 35 35 H 1.09001 * 109.47798 * 177.58700 * 19 18 17 36 36 H 1.08995 * 109.48020 * 297.61472 * 19 18 17 37 37 H 1.09003 * 109.47862 * 301.18136 * 21 20 19 38 38 H 1.08992 * 109.47676 * 181.14016 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6287 1.9734 0.8585 5 7 1.6172 2.1113 -1.2377 6 6 2.2580 1.5019 -2.4108 7 6 1.7239 2.1438 -3.6652 8 1 0.9828 2.9266 -3.5977 9 6 2.1820 1.7326 -4.8988 10 7 1.7162 2.2932 -5.9936 11 14 3.4642 0.3792 -5.0154 12 1 4.8220 0.9802 -4.9882 13 1 3.3105 -0.5486 -3.8663 14 1 3.2797 -0.3696 -6.2844 15 6 3.5677 1.4434 0.0840 16 1 3.9799 0.9108 -0.7732 17 6 4.0796 2.8870 0.0835 18 6 5.6026 2.8772 0.2462 19 6 5.9657 2.1325 1.5336 20 8 5.4336 0.8072 1.4819 21 6 4.0093 0.7540 1.3776 22 1 -0.3633 0.5675 -0.8567 23 1 -0.3634 -1.0257 -0.0632 24 1 -0.3634 0.4582 0.9199 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.8061 3.1017 -1.1963 28 1 2.0417 0.4337 -2.4288 29 1 3.3360 1.6534 -2.3556 30 1 2.0382 2.0037 -6.8616 31 1 3.8167 3.3668 -0.8593 32 1 3.6280 3.4343 0.9109 33 1 6.0569 2.3729 -0.6068 34 1 5.9697 3.9020 0.3013 35 1 7.0502 2.0851 1.6326 36 1 5.5452 2.6601 2.3896 37 1 3.5630 1.2636 2.2317 38 1 3.6845 -0.2863 1.3643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724008068.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:09 Heat of formation + Delta-G solvation = -85.812958 kcal Electronic energy + Delta-G solvation = -16897.623227 eV Core-core repulsion = 14352.332891 eV Total energy + Delta-G solvation = -2545.290336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83287 -38.33162 -35.04801 -34.15719 -33.03751 -31.86560 -29.22041 -26.60997 -25.41402 -23.84632 -23.80694 -21.32261 -20.26022 -19.14496 -17.46826 -17.21777 -16.71787 -16.02098 -15.83393 -15.57571 -15.25612 -14.80679 -14.49610 -14.25655 -14.13176 -13.74804 -13.49090 -13.20390 -12.84681 -12.52879 -12.37672 -12.14796 -12.07257 -11.89761 -11.81784 -11.57739 -11.37727 -11.28392 -10.99946 -10.82101 -10.42118 -9.01986 -8.31680 -6.33588 1.29139 1.31030 1.41812 2.30225 2.96534 3.02837 3.53472 3.70424 3.81198 3.93374 4.04903 4.20542 4.33216 4.37491 4.39898 4.57132 4.61998 4.69747 4.77281 4.78467 4.87707 4.91600 5.00982 5.02270 5.06963 5.16390 5.22499 5.26840 5.34898 5.49299 5.59126 5.63038 5.99203 6.27013 6.61262 6.69878 6.81010 7.30944 8.85363 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.009135 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.628973 B = 3064.352111 C = 3634.166312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.095 3.905 4 H 0.095 0.905 5 N -0.675 5.675 6 C 0.180 3.820 7 C -0.521 4.521 8 H 0.037 0.963 9 C 0.010 3.990 10 N -0.948 5.948 11 Si 0.942 3.058 12 H -0.269 1.269 13 H -0.254 1.254 14 H -0.280 1.280 15 C -0.155 4.155 16 H 0.049 0.951 17 C -0.119 4.119 18 C -0.154 4.154 19 C 0.060 3.940 20 O -0.406 6.406 21 C 0.072 3.928 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.335 0.665 28 H 0.023 0.977 29 H -0.017 1.017 30 H 0.266 0.734 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.568 -2.458 17.976 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C -0.015 4.015 4 H 0.113 0.887 5 N -0.304 5.304 6 C 0.052 3.948 7 C -0.559 4.559 8 H 0.056 0.944 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.766 3.234 12 H -0.194 1.194 13 H -0.178 1.178 14 H -0.205 1.205 15 C -0.176 4.176 16 H 0.068 0.932 17 C -0.156 4.156 18 C -0.192 4.192 19 C -0.016 4.016 20 O -0.325 6.325 21 C -0.005 4.005 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.153 0.847 28 H 0.041 0.959 29 H 0.001 0.999 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.096 -2.993 17.730 18.986 hybrid contribution 1.079 0.272 -1.035 1.520 sum 7.176 -2.720 16.695 18.374 Atomic orbital electron populations 1.21584 0.95119 1.00942 1.01914 1.21670 0.97066 0.95499 1.01390 1.21686 0.90769 0.96043 0.93014 0.88701 1.60518 1.61295 1.07012 1.01575 1.19680 0.91445 0.95111 0.88573 1.21411 1.23264 1.20310 0.90957 0.94432 1.25786 0.98697 0.98948 0.95288 1.70050 1.45743 1.44611 0.98453 0.85790 0.79452 0.79928 0.78239 1.19443 1.17761 1.20546 1.22499 0.98340 0.97363 0.99355 0.93204 1.21616 0.96117 0.95871 1.02033 1.22168 0.95959 1.02008 0.99042 1.22711 0.99887 0.82793 0.96224 1.87891 1.21802 1.28423 1.94414 1.22704 0.80486 1.01804 0.95463 0.93990 0.92915 0.91702 0.94347 0.89547 0.84728 0.95926 0.99944 0.92482 0.93413 0.89981 0.93337 0.89199 0.87733 0.91451 0.91145 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.83 71.98 0.71 -3.24 16 2 C -0.12 -3.43 5.04 30.60 0.15 -3.28 16 3 C 0.10 2.84 2.13 44.92 0.10 2.94 16 4 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 5 N -0.67 -26.53 5.51 -495.57 -2.73 -29.26 16 6 C 0.18 8.61 3.56 85.55 0.30 8.91 16 7 C -0.52 -30.55 9.91 25.60 0.25 -30.30 16 8 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 9 C 0.01 0.60 5.47 84.65 0.46 1.06 16 10 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 11 Si 0.94 45.52 27.47 68.60 1.88 47.41 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.25 -11.63 6.54 99.48 0.65 -10.98 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 15 C -0.15 -4.46 1.44 -10.71 -0.02 -4.48 16 16 H 0.05 1.79 6.44 -2.38 -0.02 1.78 16 17 C -0.12 -3.18 4.82 30.71 0.15 -3.03 16 18 C -0.15 -3.65 6.14 30.68 0.19 -3.46 16 19 C 0.06 1.24 6.84 72.02 0.49 1.73 16 20 O -0.41 -10.60 10.77 -148.98 -1.60 -12.20 16 21 C 0.07 1.70 5.71 72.01 0.41 2.11 16 22 H 0.04 1.48 7.60 -2.39 -0.02 1.46 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.04 1.32 6.30 -2.39 -0.02 1.31 16 26 H 0.09 1.94 6.33 -2.38 -0.02 1.93 16 27 H 0.33 12.93 7.54 -89.69 -0.68 12.26 16 28 H 0.02 1.12 5.26 -2.39 -0.01 1.11 16 29 H -0.02 -0.81 5.58 -2.39 -0.01 -0.82 16 30 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.05 1.53 6.76 -2.39 -0.02 1.51 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 2.19 6.51 -2.39 -0.02 2.18 16 Total: -1.00 -67.16 287.32 1.35 -65.81 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.30 Total: 19.16 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 3.20 Total: -31.03 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -2.43 Total: -89.14 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.60 Total: -12.20 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -67.16 1.35 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724008068.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.005 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds