Wall clock time and date at job start Mon Mar 30 2020 03:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 H 1.09006 * 109.47037 * 54.58347 * 3 2 1 5 5 N 1.46903 * 109.47164 * 174.58416 * 3 2 1 6 6 C 1.46904 * 110.99885 * 274.54347 * 5 3 2 7 7 C 1.50698 * 109.46956 * 185.25440 * 6 5 3 8 8 H 1.07996 * 120.00148 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99729 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00065 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99990 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46963 * 89.99878 * 11 9 7 13 13 H 1.48499 * 109.47022 * 209.99865 * 11 9 7 14 14 H 1.48503 * 109.47233 * 329.99942 * 11 9 7 15 15 C 1.53002 * 109.47564 * 294.58381 * 3 2 1 16 16 H 1.09004 * 109.51722 * 59.99765 * 15 3 2 17 17 C 1.53171 * 109.52489 * 180.12507 * 15 3 2 18 18 C 1.53183 * 109.03490 * 176.88800 * 17 15 3 19 19 C 1.53100 * 109.16159 * 303.01907 * 18 17 15 20 20 O 1.42900 * 109.41254 * 57.60750 * 19 18 17 21 21 C 1.42908 * 114.15769 * 298.87381 * 20 19 18 22 22 H 1.08997 * 109.46909 * 177.51597 * 1 2 3 23 23 H 1.08993 * 109.47100 * 297.51940 * 1 2 3 24 24 H 1.09003 * 109.46564 * 57.51805 * 1 2 3 25 25 H 1.08999 * 109.47428 * 240.00045 * 2 1 3 26 26 H 1.08999 * 109.47342 * 119.99873 * 2 1 3 27 27 H 1.00897 * 111.00108 * 38.49790 * 5 3 2 28 28 H 1.08999 * 109.47187 * 305.26253 * 6 5 3 29 29 H 1.09007 * 109.46333 * 65.25871 * 6 5 3 30 30 H 0.96991 * 120.00464 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.54376 * 296.75128 * 17 15 3 32 32 H 1.08999 * 109.54464 * 57.02071 * 17 15 3 33 33 H 1.08999 * 109.52188 * 62.92340 * 18 17 15 34 34 H 1.09000 * 109.52382 * 183.05359 * 18 17 15 35 35 H 1.08995 * 109.48000 * 177.59545 * 19 18 17 36 36 H 1.09000 * 109.48018 * 297.61495 * 19 18 17 37 37 H 1.09000 * 109.42578 * 301.11132 * 21 20 19 38 38 H 1.09000 * 109.53788 * 181.07692 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 0.8376 5 7 3.5032 1.4446 0.1307 6 6 3.9057 1.3798 1.5420 7 6 5.4033 1.5137 1.6439 8 1 5.9966 1.6353 0.7498 9 6 6.0159 1.4810 2.8787 10 7 7.3228 1.5984 2.9677 11 14 4.9897 1.2700 4.4252 12 1 4.8495 -0.1760 4.7328 13 1 5.6585 1.9551 5.5604 14 1 3.6451 1.8633 4.2118 15 6 1.6443 2.1235 -1.3117 16 1 0.5586 2.1223 -1.4095 17 6 2.1570 3.5668 -1.3142 18 6 1.8231 4.2133 -2.6622 19 6 2.4380 3.3762 -3.7870 20 8 1.9430 2.0380 -3.7083 21 6 2.2648 1.3662 -2.4887 22 1 -0.3633 -1.0267 -0.0445 23 1 -0.3633 0.4748 0.9113 24 1 -0.3632 0.5519 -0.8669 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9145 0.6898 -0.3976 28 1 3.4300 2.1909 2.0932 29 1 3.5969 0.4234 1.9643 30 1 7.7538 1.5751 3.8363 31 1 1.6753 4.1263 -0.5123 32 1 3.2368 3.5705 -1.1656 33 1 0.7412 4.2543 -2.7885 34 1 2.2320 5.2232 -2.6932 35 1 2.1677 3.8078 -4.7507 36 1 3.5231 3.3693 -3.6834 37 1 3.3476 1.3318 -2.3686 38 1 1.8695 0.3508 -2.5166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724008070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:11 Heat of formation + Delta-G solvation = -67.390069 kcal Electronic energy + Delta-G solvation = -16670.757637 eV Core-core repulsion = 14126.266178 eV Total energy + Delta-G solvation = -2544.491459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52170 -36.86278 -33.44040 -32.86112 -31.64349 -30.44787 -27.32609 -24.84158 -24.59167 -23.06800 -21.24852 -20.61329 -19.18489 -16.81685 -16.13954 -15.86653 -14.96922 -14.78799 -14.29737 -14.24431 -13.86529 -13.61655 -13.20858 -12.59002 -12.49031 -12.36911 -12.03429 -11.68769 -11.66279 -11.50165 -10.82968 -10.76267 -10.67313 -10.62538 -10.45593 -10.09663 -9.96270 -9.68444 -9.29670 -9.14804 -8.60906 -7.45017 -6.06987 -4.04523 3.26436 3.34381 3.36487 4.05514 4.40439 4.91420 4.93415 5.01838 5.12377 5.23072 5.25019 5.29395 5.34265 5.46813 5.53347 5.70317 5.71971 5.79332 5.93218 5.97606 6.03155 6.09816 6.16255 6.21031 6.31436 6.35806 6.38929 6.58625 6.78028 6.81502 7.00503 7.38741 7.61653 7.88635 8.30697 8.64316 9.01872 9.55284 11.06426 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029114 B = 0.007304 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.511027 B = 3832.554020 C = 4348.870680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.089 3.911 4 H 0.073 0.927 5 N -0.671 5.671 6 C 0.165 3.835 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.877 3.123 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.268 1.268 15 C -0.105 4.105 16 H 0.070 0.930 17 C -0.112 4.112 18 C -0.155 4.155 19 C 0.062 3.938 20 O -0.391 6.391 21 C 0.064 3.936 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.333 0.667 28 H 0.025 0.975 29 H -0.021 1.021 30 H 0.263 0.737 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.166 0.812 -9.128 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.198 4.198 3 C -0.022 4.022 4 H 0.091 0.909 5 N -0.300 5.300 6 C 0.037 3.963 7 C -0.551 4.551 8 H 0.097 0.903 9 C -0.134 4.134 10 N -0.540 5.540 11 Si 0.704 3.296 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.124 4.124 16 H 0.088 0.912 17 C -0.149 4.149 18 C -0.193 4.193 19 C -0.015 4.015 20 O -0.309 6.309 21 C -0.013 4.013 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.043 0.957 29 H -0.003 1.003 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.043 1.435 -9.161 16.003 hybrid contribution -0.497 -0.915 1.499 1.825 sum -13.541 0.520 -7.662 15.567 Atomic orbital electron populations 1.21767 0.96029 1.01125 1.01723 1.22363 0.96270 0.99008 1.02143 1.21595 0.90490 0.93546 0.96615 0.90920 1.60592 1.04736 1.51027 1.13686 1.20022 0.97175 0.94265 0.84790 1.21062 0.89840 1.49560 0.94683 0.90319 1.24908 0.94772 0.94868 0.98817 1.69895 1.08563 1.50819 1.24709 0.86839 0.80902 0.78463 0.83363 1.20397 1.21192 1.19241 1.21749 0.99561 0.96032 0.95080 0.91161 1.21543 1.03604 0.94339 0.95446 1.22207 1.01110 0.99478 0.96512 1.22522 0.97868 0.82741 0.98391 1.87851 1.78444 1.26449 1.38203 1.22715 1.00119 0.95244 0.83182 0.93270 0.92991 0.92456 0.91822 0.91853 0.84915 0.95747 1.00322 0.92679 0.92355 0.89404 0.91958 0.91340 0.89715 0.93016 0.91976 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.73 37.16 0.36 -1.41 16 2 C -0.16 -2.24 5.18 -26.73 -0.14 -2.37 16 3 C 0.09 1.41 1.81 -67.71 -0.12 1.29 16 4 H 0.07 1.23 7.71 -51.93 -0.40 0.83 16 5 N -0.67 -13.07 4.89 -107.98 -0.53 -13.59 16 6 C 0.17 3.90 4.33 -4.97 -0.02 3.88 16 7 C -0.51 -14.49 9.92 -34.44 -0.34 -14.83 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 11 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 15 C -0.10 -1.48 2.03 -90.48 -0.18 -1.67 16 16 H 0.07 0.94 6.53 -51.93 -0.34 0.60 16 17 C -0.11 -1.62 5.20 -26.55 -0.14 -1.76 16 18 C -0.16 -1.90 6.14 -26.59 -0.16 -2.06 16 19 C 0.06 0.77 6.85 37.21 0.25 1.02 16 20 O -0.39 -5.67 10.76 -35.23 -0.38 -6.05 16 21 C 0.06 0.90 5.50 37.21 0.20 1.10 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.65 6.47 -51.93 -0.34 0.31 16 25 H 0.06 0.84 6.22 -51.93 -0.32 0.52 16 26 H 0.06 0.99 7.46 -51.93 -0.39 0.60 16 27 H 0.33 6.34 7.74 -39.29 -0.30 6.03 16 28 H 0.02 0.60 6.98 -51.93 -0.36 0.24 16 29 H -0.02 -0.49 6.93 -51.93 -0.36 -0.85 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.49 7.52 -51.93 -0.39 1.10 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.94 7.10 -51.93 -0.37 0.57 16 38 H 0.09 1.13 6.46 -51.93 -0.34 0.79 16 LS Contribution 290.47 15.07 4.38 4.38 Total: -1.00 -29.78 290.47 -7.27 -37.05 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.46 Total: 3.13 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -0.39 Total: -14.94 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.25 Total: -40.46 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.38 Total: -6.05 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.78 -7.27 -37.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724008070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.345 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds