Wall clock time and date at job start Mon Mar 30 2020 03:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 H 1.09006 * 109.47037 * 54.58347 * 3 2 1 5 5 N 1.46903 * 109.47164 * 174.58416 * 3 2 1 6 6 C 1.46904 * 110.99885 * 274.54347 * 5 3 2 7 7 C 1.50698 * 109.46956 * 185.25440 * 6 5 3 8 8 H 1.07996 * 120.00148 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99729 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00065 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99990 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46963 * 89.99878 * 11 9 7 13 13 H 1.48499 * 109.47022 * 209.99865 * 11 9 7 14 14 H 1.48503 * 109.47233 * 329.99942 * 11 9 7 15 15 C 1.53002 * 109.47564 * 294.58381 * 3 2 1 16 16 H 1.09004 * 109.51722 * 59.99765 * 15 3 2 17 17 C 1.53171 * 109.52489 * 180.12507 * 15 3 2 18 18 C 1.53183 * 109.03490 * 176.88800 * 17 15 3 19 19 C 1.53100 * 109.16159 * 303.01907 * 18 17 15 20 20 O 1.42900 * 109.41254 * 57.60750 * 19 18 17 21 21 C 1.42908 * 114.15769 * 298.87381 * 20 19 18 22 22 H 1.08997 * 109.46909 * 177.51597 * 1 2 3 23 23 H 1.08993 * 109.47100 * 297.51940 * 1 2 3 24 24 H 1.09003 * 109.46564 * 57.51805 * 1 2 3 25 25 H 1.08999 * 109.47428 * 240.00045 * 2 1 3 26 26 H 1.08999 * 109.47342 * 119.99873 * 2 1 3 27 27 H 1.00897 * 111.00108 * 38.49790 * 5 3 2 28 28 H 1.08999 * 109.47187 * 305.26253 * 6 5 3 29 29 H 1.09007 * 109.46333 * 65.25871 * 6 5 3 30 30 H 0.96991 * 120.00464 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.54376 * 296.75128 * 17 15 3 32 32 H 1.08999 * 109.54464 * 57.02071 * 17 15 3 33 33 H 1.08999 * 109.52188 * 62.92340 * 18 17 15 34 34 H 1.09000 * 109.52382 * 183.05359 * 18 17 15 35 35 H 1.08995 * 109.48000 * 177.59545 * 19 18 17 36 36 H 1.09000 * 109.48018 * 297.61495 * 19 18 17 37 37 H 1.09000 * 109.42578 * 301.11132 * 21 20 19 38 38 H 1.09000 * 109.53788 * 181.07692 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 0.8376 5 7 3.5032 1.4446 0.1307 6 6 3.9057 1.3798 1.5420 7 6 5.4033 1.5137 1.6439 8 1 5.9966 1.6353 0.7498 9 6 6.0159 1.4810 2.8787 10 7 7.3228 1.5984 2.9677 11 14 4.9897 1.2700 4.4252 12 1 4.8495 -0.1760 4.7328 13 1 5.6585 1.9551 5.5604 14 1 3.6451 1.8633 4.2118 15 6 1.6443 2.1235 -1.3117 16 1 0.5586 2.1223 -1.4095 17 6 2.1570 3.5668 -1.3142 18 6 1.8231 4.2133 -2.6622 19 6 2.4380 3.3762 -3.7870 20 8 1.9430 2.0380 -3.7083 21 6 2.2648 1.3662 -2.4887 22 1 -0.3633 -1.0267 -0.0445 23 1 -0.3633 0.4748 0.9113 24 1 -0.3632 0.5519 -0.8669 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9145 0.6898 -0.3976 28 1 3.4300 2.1909 2.0932 29 1 3.5969 0.4234 1.9643 30 1 7.7538 1.5751 3.8363 31 1 1.6753 4.1263 -0.5123 32 1 3.2368 3.5705 -1.1656 33 1 0.7412 4.2543 -2.7885 34 1 2.2320 5.2232 -2.6932 35 1 2.1677 3.8078 -4.7507 36 1 3.5231 3.3693 -3.6834 37 1 3.3476 1.3318 -2.3686 38 1 1.8695 0.3508 -2.5166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724008070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:10 Heat of formation + Delta-G solvation = -87.392121 kcal Electronic energy + Delta-G solvation = -16671.624991 eV Core-core repulsion = 14126.266178 eV Total energy + Delta-G solvation = -2545.358813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68123 -38.16583 -35.27909 -34.06726 -33.38335 -31.53110 -29.13809 -26.03817 -25.89632 -24.13929 -23.19461 -21.73067 -20.43783 -18.89273 -17.35807 -17.02695 -16.55155 -16.11311 -15.72867 -15.42884 -15.35879 -14.91497 -14.55134 -14.38407 -13.90232 -13.49156 -13.44953 -13.17446 -12.84381 -12.71581 -12.49677 -12.22651 -11.97497 -11.85489 -11.77792 -11.59602 -11.53661 -11.22966 -10.94320 -10.80807 -10.27548 -9.02688 -8.30431 -6.33955 1.32491 1.34566 1.45427 2.32596 3.00456 3.03788 3.50642 3.75996 3.92267 4.05007 4.13554 4.16088 4.28220 4.38811 4.48918 4.61218 4.63862 4.70104 4.80739 4.82947 4.94642 4.95154 5.04572 5.08111 5.12326 5.15851 5.21241 5.26338 5.30607 5.48449 5.54832 5.62888 5.98418 6.31474 6.58922 6.68860 6.78244 7.30955 8.86498 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029114 B = 0.007304 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.511027 B = 3832.554020 C = 4348.870680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.155 4.155 3 C 0.090 3.910 4 H 0.064 0.936 5 N -0.677 5.677 6 C 0.179 3.821 7 C -0.523 4.523 8 H 0.037 0.963 9 C 0.007 3.993 10 N -0.948 5.948 11 Si 0.949 3.051 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.251 1.251 15 C -0.096 4.096 16 H 0.088 0.912 17 C -0.114 4.114 18 C -0.148 4.148 19 C 0.056 3.944 20 O -0.399 6.399 21 C 0.067 3.933 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.334 0.666 28 H 0.021 0.979 29 H -0.016 1.016 30 H 0.267 0.733 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 0.627 -9.192 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.194 4.194 3 C -0.020 4.020 4 H 0.082 0.918 5 N -0.306 5.306 6 C 0.050 3.950 7 C -0.561 4.561 8 H 0.055 0.945 9 C -0.190 4.190 10 N -0.589 5.589 11 Si 0.773 3.227 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.175 1.175 15 C -0.115 4.115 16 H 0.106 0.894 17 C -0.152 4.152 18 C -0.186 4.186 19 C -0.021 4.021 20 O -0.319 6.319 21 C -0.010 4.010 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.039 0.961 29 H 0.002 0.998 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.732 1.251 -9.249 18.292 hybrid contribution 0.393 -0.823 1.411 1.680 sum -15.338 0.427 -7.839 17.231 Atomic orbital electron populations 1.21727 0.93862 1.02293 1.02214 1.22291 0.98111 0.97189 1.01797 1.21654 0.87867 0.95131 0.97397 0.91763 1.60467 1.07537 1.51385 1.11255 1.19717 0.93921 0.94080 0.87245 1.21355 0.92207 1.49141 0.93413 0.94514 1.25863 0.95961 0.94459 1.02717 1.70051 1.10688 1.52336 1.25847 0.85688 0.79586 0.79030 0.78437 1.19191 1.20736 1.17518 1.21687 1.00434 0.95479 0.93937 0.89351 1.21519 1.01543 0.95067 0.97049 1.22162 1.01902 0.99779 0.94748 1.22701 0.97402 0.82119 0.99830 1.87841 1.78489 1.27378 1.38150 1.22674 0.99060 0.95992 0.83233 0.91861 0.92954 0.91455 0.90935 0.93493 0.84795 0.96123 0.99804 0.92439 0.92414 0.92537 0.90678 0.90108 0.87208 0.94010 0.93836 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.73 71.98 0.70 -2.26 16 2 C -0.15 -4.06 5.18 30.60 0.16 -3.90 16 3 C 0.09 2.75 1.81 44.92 0.08 2.83 16 4 H 0.06 2.09 7.71 -2.38 -0.02 2.07 16 5 N -0.68 -26.52 4.89 -495.55 -2.42 -28.95 16 6 C 0.18 8.45 4.33 85.56 0.37 8.82 16 7 C -0.52 -30.35 9.92 25.60 0.25 -30.09 16 8 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 9 C 0.01 0.43 5.47 84.66 0.46 0.89 16 10 N -0.95 -59.68 13.96 21.45 0.30 -59.39 16 11 Si 0.95 44.32 27.47 68.60 1.88 46.20 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 14 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 15 C -0.10 -2.56 2.03 -10.70 -0.02 -2.58 16 16 H 0.09 2.09 6.53 -2.38 -0.02 2.07 16 17 C -0.11 -3.20 5.20 30.71 0.16 -3.04 16 18 C -0.15 -3.32 6.14 30.69 0.19 -3.13 16 19 C 0.06 1.30 6.85 72.02 0.49 1.79 16 20 O -0.40 -10.82 10.76 -148.98 -1.60 -12.42 16 21 C 0.07 1.79 5.50 72.01 0.40 2.18 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.27 6.47 -2.39 -0.02 1.25 16 25 H 0.07 1.76 6.22 -2.39 -0.01 1.75 16 26 H 0.05 1.39 7.46 -2.39 -0.02 1.37 16 27 H 0.33 12.93 7.74 -89.70 -0.69 12.24 16 28 H 0.02 1.00 6.98 -2.39 -0.02 0.98 16 29 H -0.02 -0.72 6.93 -2.38 -0.02 -0.74 16 30 H 0.27 15.62 8.31 -92.72 -0.77 14.85 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.94 7.52 -2.39 -0.02 1.92 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.04 1.32 7.10 -2.39 -0.02 1.30 16 38 H 0.10 2.38 6.46 -2.39 -0.02 2.36 16 Total: -1.00 -64.81 290.47 1.67 -63.14 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.27 Total: 19.91 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 3.24 Total: -28.50 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -2.13 Total: -88.33 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.60 Total: -12.42 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -64.81 1.67 -63.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724008070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.252 kcal (2) G-P(sol) polarization free energy of solvation -64.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds