Wall clock time and date at job start Mon Mar 30 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 H 1.09004 * 109.50711 * 303.07092 * 3 2 1 5 5 C 1.53096 * 109.50685 * 63.15544 * 3 2 1 6 6 O 1.43014 * 109.26141 * 176.78442 * 5 3 2 7 7 C 1.43018 * 113.73682 * 301.33564 * 6 5 3 8 8 C 1.53099 * 109.26202 * 58.66618 * 7 6 5 9 9 N 1.47005 * 109.25719 * 303.15367 * 8 7 6 10 10 C 1.46902 * 111.00224 * 182.38818 * 9 8 7 11 11 H 1.08992 * 109.47414 * 184.18100 * 10 9 8 12 12 C 1.53003 * 109.46972 * 304.18500 * 10 9 8 13 13 C 1.53000 * 109.46807 * 64.17867 * 10 9 8 14 14 C 1.50705 * 109.46997 * 65.00089 * 13 10 9 15 15 H 1.08000 * 120.00185 * 0.02562 * 14 13 10 16 16 C 1.37875 * 119.99818 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99752 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47150 * 90.00241 * 18 16 14 20 20 H 1.48500 * 109.46788 * 209.99673 * 18 16 14 21 21 H 1.48495 * 109.47121 * 329.99860 * 18 16 14 22 22 H 1.09002 * 109.46819 * 174.12946 * 1 2 3 23 23 H 1.08994 * 109.46957 * 294.12035 * 1 2 3 24 24 H 1.08994 * 109.47201 * 54.12740 * 1 2 3 25 25 H 1.09001 * 109.47356 * 120.00388 * 2 1 3 26 26 H 1.09005 * 109.47167 * 240.00278 * 2 1 3 27 27 H 1.08993 * 109.51184 * 296.72364 * 5 3 2 28 28 H 1.09002 * 109.50437 * 56.80888 * 5 3 2 29 29 H 1.09006 * 109.50448 * 178.60317 * 7 6 5 30 30 H 1.08996 * 109.50729 * 298.72955 * 7 6 5 31 31 H 1.09007 * 109.50289 * 63.08557 * 8 7 6 32 32 H 1.08997 * 109.50810 * 183.16967 * 8 7 6 33 33 H 1.09002 * 109.46975 * 299.99013 * 12 10 9 34 34 H 1.08992 * 109.47377 * 59.99577 * 12 10 9 35 35 H 1.09001 * 109.46824 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47171 * 185.00207 * 13 10 9 37 37 H 1.08995 * 109.47591 * 305.00515 * 13 10 9 38 38 H 0.96997 * 119.99937 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6327 1.9725 -0.8610 5 6 1.5960 2.1417 1.2876 6 8 2.1381 3.4648 1.3169 7 6 3.5662 3.5034 1.2499 8 6 4.0301 2.8181 -0.0381 9 7 3.5084 1.4441 -0.0711 10 6 3.9783 0.7311 -1.2665 11 1 3.5189 -0.2565 -1.3046 12 6 3.5908 1.5224 -2.5174 13 6 5.5000 0.5840 -1.2073 14 6 5.8744 -0.2981 -0.0441 15 1 5.1041 -0.7125 0.5893 16 6 7.2005 -0.5767 0.2109 17 7 8.1386 -0.0724 -0.5606 18 14 7.6645 -1.6706 1.6524 19 1 7.7105 -3.0859 1.2050 20 1 8.9986 -1.2708 2.1676 21 1 6.6535 -1.5246 2.7301 22 1 -0.3633 -1.0223 -0.1051 23 1 -0.3633 0.4199 0.9379 24 1 -0.3633 0.6022 -0.8327 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 0.5077 2.1935 1.3170 28 1 1.9571 1.5806 2.1495 29 1 3.9027 4.5403 1.2521 30 1 3.9852 2.9824 2.1107 31 1 3.6552 3.3706 -0.8997 32 1 5.1195 2.7953 -0.0662 33 1 2.5067 1.6272 -2.5597 34 1 4.0502 2.5101 -2.4794 35 1 3.9398 0.9936 -3.4044 36 1 5.8580 0.1349 -2.1338 37 1 5.9554 1.5660 -1.0798 38 1 9.0714 -0.2688 -0.3814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:58 Heat of formation + Delta-G solvation = -51.036835 kcal Electronic energy + Delta-G solvation = -17131.122570 eV Core-core repulsion = 14587.340240 eV Total energy + Delta-G solvation = -2543.782330 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64092 -36.38737 -34.23699 -32.59308 -30.64229 -29.21993 -27.34388 -25.86724 -24.54983 -23.07283 -21.38997 -20.41842 -18.50291 -16.36211 -16.17501 -15.83616 -14.91006 -14.61672 -14.32742 -14.12003 -13.80384 -13.34701 -12.99023 -12.80641 -12.14728 -11.95253 -11.76394 -11.54565 -11.34607 -11.15322 -10.94122 -10.85277 -10.60169 -10.49025 -10.33791 -10.07977 -9.83197 -9.22790 -9.06134 -8.97073 -8.27048 -7.50337 -5.90147 -3.88079 3.37547 3.44014 3.48773 4.15560 4.39669 4.55234 5.07335 5.16955 5.37600 5.42562 5.46789 5.51827 5.63636 5.66665 5.70943 5.79946 5.90378 5.95612 5.98665 6.01640 6.11962 6.14758 6.27741 6.34494 6.45196 6.52856 6.61913 6.69652 6.99804 7.43343 7.50681 7.66162 7.87842 7.99053 8.11075 8.56642 9.17895 9.73754 11.21755 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.008530 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.275005 B = 3281.672549 C = 3339.870800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.046 3.954 4 H 0.041 0.959 5 C 0.070 3.930 6 O -0.394 6.394 7 C 0.063 3.937 8 C 0.019 3.981 9 N -0.504 5.504 10 C 0.082 3.918 11 H 0.077 0.923 12 C -0.185 4.185 13 C 0.030 3.970 14 C -0.489 4.489 15 H 0.060 0.940 16 C 0.050 3.950 17 N -0.904 5.904 18 Si 0.888 3.112 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.274 1.274 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.382 3.818 0.921 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.063 4.063 4 H 0.059 0.941 5 C -0.007 4.007 6 O -0.313 6.313 7 C -0.013 4.013 8 C -0.109 4.109 9 N -0.228 5.228 10 C -0.025 4.025 11 H 0.094 0.906 12 C -0.243 4.243 13 C -0.007 4.007 14 C -0.528 4.528 15 H 0.078 0.922 16 C -0.149 4.149 17 N -0.545 5.545 18 Si 0.717 3.283 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.199 1.199 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.121 3.741 1.342 12.756 hybrid contribution 0.324 -0.418 -0.049 0.531 sum -11.797 3.323 1.293 12.324 Atomic orbital electron populations 1.21808 0.96187 1.01437 1.01415 1.21573 0.94625 0.95886 1.03544 1.22296 0.90318 0.96313 0.97377 0.94115 1.22704 0.97803 0.83321 0.96863 1.87891 1.21163 1.27415 1.94825 1.22698 0.80426 1.00459 0.97760 1.22770 1.02437 0.89268 0.96435 1.62368 1.05562 1.14083 1.40836 1.22012 1.00109 0.95714 0.84695 0.90551 1.22513 0.99679 1.01506 1.00651 1.19205 0.86943 0.97358 0.97223 1.21158 0.91545 1.28183 1.11919 0.92180 1.25008 0.96838 0.96521 0.96526 1.69962 1.00006 1.45628 1.38858 0.86646 0.77613 0.80809 0.83219 1.21015 1.21571 1.19927 0.92731 0.92832 0.93050 0.90897 0.91095 0.89349 0.92538 0.89217 0.92229 0.94878 0.88320 0.94134 0.92894 0.92540 0.96362 0.96345 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.47 37.16 0.35 -1.35 16 2 C -0.12 -1.71 5.23 -26.73 -0.14 -1.85 16 3 C 0.05 0.73 1.78 -67.60 -0.12 0.61 16 4 H 0.04 0.66 6.65 -51.93 -0.35 0.32 16 5 C 0.07 1.05 5.92 37.21 0.22 1.27 16 6 O -0.39 -6.49 10.83 -35.23 -0.38 -6.88 16 7 C 0.06 1.02 7.01 37.21 0.26 1.28 16 8 C 0.02 0.34 4.83 -3.72 -0.02 0.33 16 9 N -0.50 -9.59 4.22 -218.42 -0.92 -10.51 16 10 C 0.08 1.66 2.02 -67.71 -0.14 1.53 16 11 H 0.08 1.56 5.79 -51.93 -0.30 1.26 16 12 C -0.18 -3.24 8.46 37.16 0.31 -2.92 16 13 C 0.03 0.75 4.33 -27.88 -0.12 0.63 16 14 C -0.49 -13.54 8.84 -34.44 -0.30 -13.85 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 16 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.55 6.90 -51.93 -0.36 0.19 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 1.09 6.05 -51.93 -0.31 0.77 16 27 H 0.09 1.11 6.82 -51.93 -0.35 0.76 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.58 6.38 -51.93 -0.33 0.25 16 32 H 0.10 2.00 6.21 -51.93 -0.32 1.68 16 33 H 0.04 0.64 6.66 -51.93 -0.35 0.30 16 34 H 0.05 0.93 6.40 -51.93 -0.33 0.60 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.49 6.22 -51.93 -0.32 0.17 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -29.73 287.84 -7.29 -37.02 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.25 Total: -1.59 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 0.21 Total: -12.98 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.19 Total: -36.83 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.38 Total: -6.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.73 -7.29 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.015 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds