Wall clock time and date at job start Mon Mar 30 2020 03:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 H 1.09004 * 109.50711 * 303.07092 * 3 2 1 5 5 C 1.53096 * 109.50685 * 63.15544 * 3 2 1 6 6 O 1.43014 * 109.26141 * 176.78442 * 5 3 2 7 7 C 1.43018 * 113.73682 * 301.33564 * 6 5 3 8 8 C 1.53099 * 109.26202 * 58.66618 * 7 6 5 9 9 N 1.47005 * 109.25719 * 303.15367 * 8 7 6 10 10 C 1.46902 * 111.00224 * 182.38818 * 9 8 7 11 11 H 1.08992 * 109.47414 * 184.18100 * 10 9 8 12 12 C 1.53003 * 109.46972 * 304.18500 * 10 9 8 13 13 C 1.53000 * 109.46807 * 64.17867 * 10 9 8 14 14 C 1.50705 * 109.46997 * 65.00089 * 13 10 9 15 15 H 1.08000 * 120.00185 * 0.02562 * 14 13 10 16 16 C 1.37875 * 119.99818 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99752 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47150 * 90.00241 * 18 16 14 20 20 H 1.48500 * 109.46788 * 209.99673 * 18 16 14 21 21 H 1.48495 * 109.47121 * 329.99860 * 18 16 14 22 22 H 1.09002 * 109.46819 * 174.12946 * 1 2 3 23 23 H 1.08994 * 109.46957 * 294.12035 * 1 2 3 24 24 H 1.08994 * 109.47201 * 54.12740 * 1 2 3 25 25 H 1.09001 * 109.47356 * 120.00388 * 2 1 3 26 26 H 1.09005 * 109.47167 * 240.00278 * 2 1 3 27 27 H 1.08993 * 109.51184 * 296.72364 * 5 3 2 28 28 H 1.09002 * 109.50437 * 56.80888 * 5 3 2 29 29 H 1.09006 * 109.50448 * 178.60317 * 7 6 5 30 30 H 1.08996 * 109.50729 * 298.72955 * 7 6 5 31 31 H 1.09007 * 109.50289 * 63.08557 * 8 7 6 32 32 H 1.08997 * 109.50810 * 183.16967 * 8 7 6 33 33 H 1.09002 * 109.46975 * 299.99013 * 12 10 9 34 34 H 1.08992 * 109.47377 * 59.99577 * 12 10 9 35 35 H 1.09001 * 109.46824 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47171 * 185.00207 * 13 10 9 37 37 H 1.08995 * 109.47591 * 305.00515 * 13 10 9 38 38 H 0.96997 * 119.99937 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6327 1.9725 -0.8610 5 6 1.5960 2.1417 1.2876 6 8 2.1381 3.4648 1.3169 7 6 3.5662 3.5034 1.2499 8 6 4.0301 2.8181 -0.0381 9 7 3.5084 1.4441 -0.0711 10 6 3.9783 0.7311 -1.2665 11 1 3.5189 -0.2565 -1.3046 12 6 3.5908 1.5224 -2.5174 13 6 5.5000 0.5840 -1.2073 14 6 5.8744 -0.2981 -0.0441 15 1 5.1041 -0.7125 0.5893 16 6 7.2005 -0.5767 0.2109 17 7 8.1386 -0.0724 -0.5606 18 14 7.6645 -1.6706 1.6524 19 1 7.7105 -3.0859 1.2050 20 1 8.9986 -1.2708 2.1676 21 1 6.6535 -1.5246 2.7301 22 1 -0.3633 -1.0223 -0.1051 23 1 -0.3633 0.4199 0.9379 24 1 -0.3633 0.6022 -0.8327 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 0.5077 2.1935 1.3170 28 1 1.9571 1.5806 2.1495 29 1 3.9027 4.5403 1.2521 30 1 3.9852 2.9824 2.1107 31 1 3.6552 3.3706 -0.8997 32 1 5.1195 2.7953 -0.0662 33 1 2.5067 1.6272 -2.5597 34 1 4.0502 2.5101 -2.4794 35 1 3.9398 0.9936 -3.4044 36 1 5.8580 0.1349 -2.1338 37 1 5.9554 1.5660 -1.0798 38 1 9.0714 -0.2688 -0.3814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:57 Heat of formation + Delta-G solvation = -70.535083 kcal Electronic energy + Delta-G solvation = -17131.968077 eV Core-core repulsion = 14587.340240 eV Total energy + Delta-G solvation = -2544.627837 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01032 -37.82603 -35.59934 -34.55168 -32.25746 -30.43478 -29.23189 -27.22374 -25.77835 -25.01719 -22.66832 -21.90235 -19.96310 -18.37020 -17.65796 -17.22604 -16.53745 -16.17253 -15.77944 -15.49056 -15.14009 -14.84206 -14.39988 -13.99602 -13.93322 -13.65104 -13.08000 -13.00597 -12.96466 -12.62447 -12.49737 -12.39899 -12.15078 -12.01920 -11.88838 -11.59510 -11.23280 -11.09122 -10.92266 -10.49409 -10.42714 -8.97208 -8.10270 -6.14934 1.41120 1.41870 1.53164 2.46724 2.88722 3.03251 3.25495 3.84769 3.97889 4.08700 4.17925 4.27828 4.31731 4.39331 4.48481 4.51479 4.55845 4.64858 4.73895 4.85419 4.87508 4.91910 5.02775 5.05277 5.17223 5.18415 5.26260 5.33903 5.47172 5.50032 5.70471 5.89282 6.15884 6.28346 6.40461 6.49421 6.98668 7.50900 9.01701 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.008530 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.275005 B = 3281.672549 C = 3339.870800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.048 3.952 4 H 0.045 0.955 5 C 0.069 3.931 6 O -0.398 6.398 7 C 0.069 3.931 8 C 0.022 3.978 9 N -0.524 5.524 10 C 0.092 3.908 11 H 0.074 0.926 12 C -0.175 4.175 13 C 0.036 3.964 14 C -0.496 4.496 15 H 0.057 0.943 16 C -0.004 4.004 17 N -0.940 5.940 18 Si 0.955 3.045 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.268 1.268 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.050 0.950 29 H 0.114 0.886 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.057 0.943 36 H -0.009 1.009 37 H -0.003 1.003 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 3.797 1.730 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.060 4.060 4 H 0.063 0.937 5 C -0.007 4.007 6 O -0.317 6.317 7 C -0.008 4.008 8 C -0.106 4.106 9 N -0.249 5.249 10 C -0.016 4.016 11 H 0.092 0.908 12 C -0.233 4.233 13 C -0.001 4.001 14 C -0.535 4.535 15 H 0.075 0.925 16 C -0.200 4.200 17 N -0.582 5.582 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.192 1.192 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.138 0.862 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.009 0.991 37 H 0.015 0.985 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.111 3.717 2.154 14.751 hybrid contribution 0.928 -0.407 -0.317 1.062 sum -13.183 3.311 1.837 13.716 Atomic orbital electron populations 1.21757 0.93319 1.02530 1.02498 1.21545 0.97064 0.94515 1.02246 1.22397 0.87995 0.97504 0.98148 0.93742 1.22859 0.99472 0.82524 0.95863 1.87892 1.20877 1.28233 1.94685 1.22680 0.80559 1.01519 0.96008 1.22697 1.00627 0.89316 0.97998 1.62277 1.07972 1.14463 1.40198 1.21698 0.96523 0.96605 0.86807 0.90778 1.22380 1.01031 1.00741 0.99190 1.19056 0.90599 0.95368 0.95073 1.21447 0.91586 1.28098 1.12339 0.92465 1.25836 0.96943 0.98033 0.99230 1.70090 1.00297 1.47131 1.40666 0.85600 0.77273 0.79067 0.79988 1.20202 1.21328 1.19204 0.91678 0.91481 0.92231 0.92277 0.92343 0.86248 0.93145 0.86767 0.93259 0.94179 0.91380 0.91876 0.93229 0.92358 0.99105 0.98494 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.47 71.98 0.68 -2.09 16 2 C -0.12 -3.14 5.23 30.59 0.16 -2.98 16 3 C 0.05 1.44 1.78 44.92 0.08 1.52 16 4 H 0.04 1.32 6.65 -2.38 -0.02 1.31 16 5 C 0.07 1.90 5.92 72.01 0.43 2.32 16 6 O -0.40 -12.17 10.83 -148.98 -1.61 -13.78 16 7 C 0.07 2.15 7.01 72.02 0.50 2.65 16 8 C 0.02 0.79 4.83 86.32 0.42 1.20 16 9 N -0.52 -19.74 4.22 -844.94 -3.56 -23.31 16 10 C 0.09 3.72 2.02 44.92 0.09 3.81 16 11 H 0.07 3.04 5.79 -2.39 -0.01 3.02 16 12 C -0.17 -5.99 8.46 71.98 0.61 -5.38 16 13 C 0.04 1.88 4.33 29.85 0.13 2.01 16 14 C -0.50 -27.99 8.84 25.60 0.23 -27.77 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 17 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 18 Si 0.95 45.37 29.54 68.60 2.03 47.40 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.12 6.90 -2.39 -0.02 1.10 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 1.72 6.05 -2.38 -0.01 1.70 16 27 H 0.12 2.53 6.82 -2.39 -0.02 2.51 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.38 6.38 -2.38 -0.02 1.36 16 32 H 0.07 2.86 6.21 -2.39 -0.01 2.84 16 33 H 0.06 1.87 6.66 -2.39 -0.02 1.86 16 34 H 0.05 1.72 6.40 -2.39 -0.02 1.70 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.00 -0.18 6.22 -2.39 -0.01 -0.19 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -63.86 287.84 1.94 -61.91 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.02 Total: 9.50 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.79 Total: -24.48 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.28 Total: -80.55 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.61 Total: -13.78 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -63.86 1.94 -61.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.621 kcal (2) G-P(sol) polarization free energy of solvation -63.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds