Wall clock time and date at job start Mon Mar 30 2020 03:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47176 * 2 1 4 4 H 1.08997 * 109.53648 * 64.56740 * 3 2 1 5 5 C 1.53096 * 109.50092 * 304.46158 * 3 2 1 6 6 O 1.43026 * 109.25348 * 183.21293 * 5 3 2 7 7 C 1.43013 * 113.73413 * 58.67081 * 6 5 3 8 8 C 1.53098 * 109.26057 * 301.32755 * 7 6 5 9 9 N 1.47003 * 109.50830 * 184.67976 * 3 2 1 10 10 C 1.46902 * 111.00016 * 302.32718 * 9 3 2 11 11 H 1.09000 * 109.47212 * 44.37685 * 10 9 3 12 12 C 1.53004 * 109.47260 * 164.37666 * 10 9 3 13 13 C 1.53000 * 109.47333 * 284.37541 * 10 9 3 14 14 C 1.50695 * 109.46979 * 69.43781 * 13 10 9 15 15 H 1.08007 * 119.99932 * 5.74482 * 14 13 10 16 16 C 1.37873 * 120.00212 * 186.02845 * 14 13 10 17 17 N 1.31517 * 120.00167 * 179.72667 * 16 14 13 18 18 Si 1.86803 * 119.99954 * 359.71830 * 16 14 13 19 19 H 1.48505 * 109.46889 * 90.00440 * 18 16 14 20 20 H 1.48501 * 109.47424 * 210.00363 * 18 16 14 21 21 H 1.48501 * 109.47148 * 330.00613 * 18 16 14 22 22 H 1.08994 * 109.47007 * 305.28991 * 1 2 3 23 23 H 1.08998 * 109.47171 * 65.28908 * 1 2 3 24 24 H 1.09005 * 109.46461 * 185.28800 * 1 2 3 25 25 H 1.08996 * 109.47509 * 240.00321 * 2 1 3 26 26 H 1.09003 * 109.47406 * 119.99710 * 2 1 3 27 27 H 1.09000 * 109.50612 * 63.28714 * 5 3 2 28 28 H 1.08997 * 109.54729 * 303.16807 * 5 3 2 29 29 H 1.09003 * 109.50295 * 181.39481 * 7 6 5 30 30 H 1.08998 * 109.54213 * 61.28752 * 7 6 5 31 31 H 1.08995 * 109.50469 * 296.91511 * 8 7 6 32 32 H 1.09004 * 109.50478 * 176.78636 * 8 7 6 33 33 H 1.08999 * 109.47292 * 300.00055 * 12 10 9 34 34 H 1.09000 * 109.46993 * 59.99885 * 12 10 9 35 35 H 1.09003 * 109.47071 * 180.02562 * 12 10 9 36 36 H 1.09003 * 109.46847 * 309.44321 * 13 10 9 37 37 H 1.08999 * 109.47457 * 189.43926 * 13 10 9 38 38 H 0.97006 * 119.99711 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.7457 1.9333 0.9277 5 6 1.4405 2.1966 -1.1899 6 8 1.9784 3.5213 -1.2282 7 6 3.4037 3.5610 -1.3386 8 6 4.0231 2.8206 -0.1503 9 7 3.5057 1.4451 -0.1130 10 6 4.1195 0.6813 0.9815 11 1 3.5748 -0.2522 1.1232 12 6 5.5773 0.3734 0.6338 13 6 4.0655 1.5040 2.2704 14 6 2.6372 1.6105 2.7388 15 1 1.8590 1.0629 2.2278 16 6 2.3228 2.4114 3.8161 17 7 1.0755 2.5085 4.2216 18 14 3.6687 3.3586 4.7000 19 1 3.8291 4.6941 4.0706 20 1 3.3000 3.5257 6.1287 21 1 4.9469 2.6089 4.6030 22 1 -0.3633 0.5937 0.8388 23 1 -0.3633 0.4296 -0.9335 24 1 -0.3632 -1.0234 0.0947 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.3572 2.2467 -1.0805 28 1 1.6894 1.6759 -2.1145 29 1 3.7401 4.5978 -1.3370 30 1 3.7109 3.0801 -2.2673 31 1 3.7604 3.3334 0.7749 32 1 5.1073 2.7990 -0.2600 33 1 5.6159 -0.2127 -0.2844 34 1 6.1220 1.3069 0.4920 35 1 6.0325 -0.1937 1.4457 36 1 4.4611 2.5019 2.0812 37 1 4.6644 1.0153 3.0388 38 1 0.8545 3.0718 4.9798 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:59 Heat of formation + Delta-G solvation = -60.897347 kcal Electronic energy + Delta-G solvation = -17579.523016 eV Core-core repulsion = 15035.313102 eV Total energy + Delta-G solvation = -2544.209914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02808 -37.86176 -35.35376 -34.64086 -32.37442 -30.30527 -29.88074 -27.16711 -25.76695 -24.51234 -22.65527 -21.68987 -20.24418 -18.81122 -17.61316 -16.96552 -16.48963 -16.12655 -15.83594 -15.46314 -15.26049 -14.74414 -14.37415 -13.98715 -13.86120 -13.66454 -13.25668 -13.10976 -12.75090 -12.59965 -12.42248 -12.29956 -12.03456 -11.96254 -11.63312 -11.53641 -11.27216 -11.20034 -10.91145 -10.68766 -10.35022 -8.95273 -8.23589 -6.22252 1.28088 1.30968 1.40453 2.34291 2.97812 3.05789 3.19325 3.98666 4.08136 4.15142 4.32063 4.37074 4.41799 4.50400 4.58878 4.60769 4.68691 4.73771 4.74456 4.91245 4.93866 5.01047 5.07787 5.16201 5.16653 5.21583 5.27796 5.39956 5.43395 5.52878 5.66198 5.71315 6.25738 6.32658 6.34279 6.39892 6.82628 7.37657 8.89275 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.011871 C = 0.010787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.242313 B = 2358.176353 C = 2594.991863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C 0.023 3.977 4 H 0.064 0.936 5 C 0.074 3.926 6 O -0.411 6.411 7 C 0.066 3.934 8 C 0.011 3.989 9 N -0.508 5.508 10 C 0.082 3.918 11 H 0.071 0.929 12 C -0.130 4.130 13 C -0.043 4.043 14 C -0.516 4.516 15 H 0.072 0.928 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.929 3.071 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.253 1.253 22 H 0.029 0.971 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.018 0.982 37 H 0.011 0.989 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -2.341 -11.303 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.085 4.085 4 H 0.082 0.918 5 C -0.003 4.003 6 O -0.330 6.330 7 C -0.010 4.010 8 C -0.118 4.118 9 N -0.232 5.232 10 C -0.026 4.026 11 H 0.089 0.911 12 C -0.188 4.188 13 C -0.081 4.081 14 C -0.554 4.554 15 H 0.090 0.910 16 C -0.186 4.186 17 N -0.586 5.586 18 Si 0.755 3.245 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.177 1.177 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.030 0.970 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.661 -2.330 -11.618 13.132 hybrid contribution 0.085 0.821 1.958 2.124 sum 5.746 -1.509 -9.660 11.341 Atomic orbital electron populations 1.21735 0.95191 1.01920 1.01434 1.21388 0.96006 0.95023 1.01546 1.22757 0.88641 0.97547 0.99562 0.91791 1.22797 0.98082 0.82325 0.97072 1.87913 1.21994 1.28377 1.94716 1.22770 0.79972 1.01257 0.97026 1.22835 1.00785 0.90153 0.98001 1.62724 1.04943 1.12255 1.43313 1.21680 0.95875 0.96504 0.88567 0.91098 1.21744 0.93984 1.01410 1.01646 1.20273 0.95708 0.96418 0.95733 1.21730 0.94050 1.26573 1.13057 0.90995 1.25785 0.96859 0.97930 0.98041 1.70037 1.19406 1.41307 1.27841 0.85963 0.81201 0.79555 0.77776 1.20197 1.21514 1.17650 0.95162 0.91066 0.91489 0.90457 0.93395 0.88873 0.91546 0.87576 0.91074 0.96037 0.88632 0.91258 0.92804 0.92246 0.96379 0.97029 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 9.26 71.98 0.67 -3.91 16 2 C -0.10 -3.51 4.58 30.60 0.14 -3.37 16 3 C 0.02 0.91 1.52 44.93 0.07 0.98 16 4 H 0.06 3.24 4.56 -2.39 -0.01 3.23 16 5 C 0.07 2.51 5.71 72.01 0.41 2.93 16 6 O -0.41 -15.14 10.83 -148.98 -1.61 -16.76 16 7 C 0.07 2.02 7.01 72.02 0.50 2.53 16 8 C 0.01 0.38 4.68 86.32 0.40 0.78 16 9 N -0.51 -18.40 4.45 -844.94 -3.76 -22.16 16 10 C 0.08 3.10 2.36 44.92 0.11 3.21 16 11 H 0.07 2.81 5.61 -2.39 -0.01 2.80 16 12 C -0.13 -3.86 9.23 71.98 0.66 -3.19 16 13 C -0.04 -1.96 3.08 29.85 0.09 -1.87 16 14 C -0.52 -28.30 7.53 25.60 0.19 -28.10 16 15 H 0.07 4.17 4.58 -2.91 -0.01 4.16 16 16 C 0.01 0.62 5.47 84.65 0.46 1.08 16 17 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 18 Si 0.93 45.13 27.36 68.60 1.88 47.01 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.25 -11.53 6.72 99.48 0.67 -10.86 16 22 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.89 6.75 -2.39 -0.02 1.88 16 24 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.87 5.60 -2.39 -0.01 1.86 16 27 H 0.09 3.05 6.68 -2.39 -0.02 3.03 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.02 0.93 6.14 -2.39 -0.01 0.91 16 32 H 0.10 2.86 6.63 -2.38 -0.02 2.85 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.51 6.72 -2.39 -0.02 1.50 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.02 0.84 4.88 -2.39 -0.01 0.82 16 37 H 0.01 0.53 7.58 -2.39 -0.02 0.51 16 38 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -63.96 277.12 1.52 -62.44 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.00 Total: 16.80 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.71 Total: -28.96 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -3.46 Total: -80.54 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.61 Total: -16.76 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -63.96 1.52 -62.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.547 kcal (2) G-P(sol) polarization free energy of solvation -63.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds