Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47424 * 2 1 4 4 C 1.50698 * 109.47255 * 185.00315 * 3 2 1 5 5 N 1.27948 * 119.99660 * 231.68112 * 4 3 2 6 6 Si 1.86796 * 120.00337 * 51.67697 * 4 3 2 7 7 H 1.48504 * 109.46707 * 359.97438 * 6 4 3 8 8 H 1.48489 * 109.47267 * 119.99857 * 6 4 3 9 9 H 1.48503 * 109.47435 * 240.00398 * 6 4 3 10 10 N 1.46899 * 109.46870 * 64.99980 * 3 2 1 11 11 C 1.47844 * 111.00061 * 60.84933 * 10 3 2 12 12 C 1.54910 * 104.80018 * 146.36155 * 11 10 3 13 13 H 1.08992 * 111.02198 * 81.03580 * 12 11 10 14 14 O 1.42895 * 110.99258 * 204.84403 * 12 11 10 15 15 C 1.55146 * 101.64907 * 322.93167 * 12 11 10 16 16 C 1.47446 * 110.99922 * 181.68781 * 10 3 2 17 17 H 1.09001 * 109.88171 * 117.34240 * 16 10 3 18 18 C 1.52993 * 109.88947 * 356.15454 * 16 10 3 19 19 C 1.53000 * 109.47586 * 117.13197 * 18 16 10 20 20 C 1.52999 * 109.47086 * 237.13470 * 18 16 10 21 21 H 1.08994 * 109.47423 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46872 * 299.99789 * 1 2 3 23 23 H 1.09003 * 109.47011 * 59.99478 * 1 2 3 24 24 H 1.09001 * 109.47316 * 240.00094 * 2 1 3 25 25 H 1.09003 * 109.47406 * 119.99856 * 2 1 3 26 26 H 1.08998 * 109.47007 * 305.00438 * 3 2 1 27 27 H 0.97000 * 120.00600 * 70.05223 * 5 4 3 28 28 H 1.09007 * 110.37148 * 27.53312 * 11 10 3 29 29 H 1.08994 * 110.37682 * 265.19544 * 11 10 3 30 30 H 0.96704 * 113.99522 * 292.26403 * 14 12 11 31 31 H 1.08998 * 110.70086 * 154.03131 * 15 12 11 32 32 H 1.08995 * 110.70410 * 277.09239 * 15 12 11 33 33 H 1.09005 * 109.47224 * 357.13378 * 18 16 10 34 34 H 1.09000 * 109.47103 * 59.99656 * 19 18 16 35 35 H 1.08998 * 109.47431 * 180.02562 * 19 18 16 36 36 H 1.09003 * 109.46943 * 299.99973 * 19 18 16 37 37 H 1.08998 * 109.47220 * 176.30199 * 20 18 16 38 38 H 1.09006 * 109.46683 * 296.30057 * 20 18 16 39 39 H 1.08995 * 109.47586 * 56.29786 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5419 1.4443 -0.1239 5 7 4.2518 2.1065 0.7095 6 14 4.3673 0.4796 -1.4941 7 1 3.3319 -0.1959 -2.3169 8 1 5.1523 1.4063 -2.3485 9 1 5.2736 -0.5391 -0.9059 10 7 1.6514 2.0993 1.2552 11 6 2.2406 1.4059 2.4205 12 6 2.5235 2.5298 3.4483 13 1 1.6194 2.7955 3.9959 14 8 3.5696 2.1517 4.3454 15 6 2.9760 3.6918 2.5253 16 6 2.0922 3.5062 1.2740 17 1 1.2259 4.1653 1.3308 18 6 2.9030 3.8144 0.0137 19 6 2.1798 4.8821 -0.8097 20 6 4.2881 4.3285 0.4113 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6054 1.9816 -0.8418 27 1 4.3224 1.8094 1.6302 28 1 3.1683 0.9087 2.1370 29 1 1.5332 0.6855 2.8310 30 1 3.3334 1.4286 4.9425 31 1 2.7808 4.6557 2.9954 32 1 4.0318 3.5945 2.2726 33 1 3.0091 2.9071 -0.5811 34 1 2.0736 5.7894 -0.2150 35 1 2.7572 5.1014 -1.7078 36 1 1.1930 4.5159 -1.0930 37 1 4.8883 4.4858 -0.4848 38 1 4.1851 5.2707 0.9498 39 1 4.7775 3.5953 1.0524 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888106489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = 103.699997 kcal Electronic energy + Delta-G solvation = -18600.955787 eV Core-core repulsion = 16050.227610 eV Total energy + Delta-G solvation = -2550.728177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.170 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.81475 -38.08495 -36.39505 -35.22078 -33.92985 -31.29099 -28.87033 -27.92240 -27.29764 -23.96463 -23.36145 -21.75174 -21.24162 -19.63980 -18.48810 -18.04589 -16.89765 -16.57037 -16.18070 -15.71577 -15.54428 -15.08878 -14.56063 -14.38522 -14.08758 -13.78692 -13.49777 -13.32694 -13.24311 -12.77815 -12.65563 -12.58537 -12.40409 -12.32754 -12.04064 -11.95729 -11.59486 -11.54568 -11.42867 -11.07803 -11.00359 -10.20826 -9.65737 -8.44602 -0.01578 1.29528 1.55519 1.71560 1.93972 2.68784 3.31810 3.47239 3.52576 3.83319 3.86888 3.97163 4.05744 4.12659 4.22025 4.25033 4.42108 4.49364 4.53622 4.61454 4.67754 4.77327 4.81028 4.84130 4.86500 4.90234 5.03496 5.05914 5.07820 5.14821 5.19531 5.23918 5.31710 5.45422 5.52543 5.79684 5.90005 5.97292 6.56182 7.17519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.041 3.959 4 C 0.020 3.980 5 N -0.743 5.743 6 Si 1.004 2.996 7 H -0.247 1.247 8 H -0.244 1.244 9 H -0.245 1.245 10 N -0.502 5.502 11 C 0.001 3.999 12 C 0.088 3.912 13 H 0.072 0.928 14 O -0.560 6.560 15 C -0.154 4.154 16 C 0.079 3.921 17 H 0.088 0.912 18 C -0.133 4.133 19 C -0.152 4.152 20 C -0.156 4.156 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.391 0.609 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.382 0.618 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -2.495 -0.286 2.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.072 4.072 4 C -0.210 4.210 5 N -0.393 5.393 6 Si 0.820 3.180 7 H -0.170 1.170 8 H -0.168 1.168 9 H -0.168 1.168 10 N -0.226 5.226 11 C -0.128 4.128 12 C 0.028 3.972 13 H 0.090 0.910 14 O -0.365 6.365 15 C -0.191 4.191 16 C -0.029 4.029 17 H 0.106 0.894 18 C -0.152 4.152 19 C -0.209 4.209 20 C -0.212 4.212 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.130 0.870 27 H 0.235 0.765 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.229 0.771 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.438 -1.723 -1.191 2.140 hybrid contribution -0.499 -0.011 1.160 1.263 sum -0.937 -1.734 -0.031 1.971 Atomic orbital electron populations 1.21655 0.94486 1.01272 1.02682 1.21657 0.97672 0.94170 1.02530 1.22615 0.94187 0.96211 0.94141 1.31415 0.96743 0.79364 1.13510 1.64268 1.59069 1.01489 1.14476 0.84752 0.79564 0.78379 0.75334 1.17033 1.16767 1.16813 1.63885 1.55881 1.01500 1.01361 1.23897 0.99141 0.97713 0.92051 1.22994 0.90277 0.94125 0.89786 0.91011 1.86519 1.40414 1.57565 1.52036 1.23506 1.03235 0.97937 0.94449 1.22484 0.96472 0.89936 0.93996 0.89419 1.22969 0.95728 1.00203 0.96304 1.21992 1.00185 0.98806 0.99954 1.22675 0.96449 0.99657 1.02433 0.93081 0.91618 0.92809 0.90858 0.91554 0.87041 0.76539 0.92253 0.89857 0.77090 0.90757 0.87296 0.87270 0.92940 0.92688 0.92710 0.93169 0.93227 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.15 9.80 37.16 0.36 0.52 16 2 C -0.12 0.19 4.92 -26.73 -0.13 0.06 16 3 C 0.04 -0.04 1.48 -68.86 -0.10 -0.14 16 4 C 0.02 -0.01 2.13 -13.90 -0.03 -0.04 16 5 N -0.74 -0.15 5.09 49.98 0.25 0.10 16 6 Si 1.00 -1.02 28.29 -169.99 -4.81 -5.83 16 7 H -0.25 0.39 6.53 56.52 0.37 0.75 16 8 H -0.24 -0.10 7.11 56.52 0.40 0.30 16 9 H -0.24 0.05 7.11 56.52 0.40 0.45 16 10 N -0.50 0.07 4.65 -216.82 -1.01 -0.93 16 11 C 0.00 0.00 4.36 -2.30 -0.01 -0.01 16 12 C 0.09 -0.01 4.26 -24.59 -0.10 -0.12 16 13 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 14 O -0.56 -0.04 13.47 -35.23 -0.47 -0.51 16 15 C -0.15 -0.11 4.63 -24.91 -0.12 -0.22 16 16 C 0.08 0.04 3.35 -66.73 -0.22 -0.18 16 17 H 0.09 0.11 7.63 -51.93 -0.40 -0.28 16 18 C -0.13 -0.07 1.69 -90.62 -0.15 -0.23 16 19 C -0.15 -0.07 8.90 37.16 0.33 0.26 16 20 C -0.16 -0.20 6.84 37.16 0.25 0.06 16 21 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 22 H 0.06 0.00 7.75 -51.93 -0.40 -0.41 16 23 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.07 -0.17 5.94 -51.93 -0.31 -0.47 16 25 H 0.07 -0.12 6.96 -51.93 -0.36 -0.48 16 26 H 0.11 -0.09 7.14 -51.93 -0.37 -0.47 16 27 H 0.39 0.08 4.84 -40.82 -0.20 -0.12 16 28 H 0.06 -0.05 4.79 -51.93 -0.25 -0.30 16 29 H 0.08 -0.11 8.10 -51.93 -0.42 -0.53 16 30 H 0.38 -1.46 9.12 45.56 0.42 -1.04 16 31 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.11 0.15 3.69 -51.93 -0.19 -0.04 16 33 H 0.11 0.03 2.41 -94.95 -0.23 -0.20 16 34 H 0.05 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.05 0.10 8.14 -51.93 -0.42 -0.33 16 38 H 0.05 0.07 7.79 -51.93 -0.40 -0.33 16 39 H 0.12 0.18 3.32 -89.97 -0.30 -0.12 16 LS Contribution 269.23 15.07 4.06 4.06 Total: 0.00 -2.17 269.23 -7.53 -9.70 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -5.63 Total: -6.53 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 0.08 Total: -0.05 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -0.75 Total: -0.83 kcal Atomic # 8 Polarization: -0.04 SS G_CDS: -0.47 Total: -0.51 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -4.81 Total: -5.83 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -2.17 -7.53 -9.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.396 kcal (2) G-P(sol) polarization free energy of solvation -2.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds