Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47424 * 2 1 4 4 C 1.50698 * 109.47255 * 185.00315 * 3 2 1 5 5 N 1.27948 * 119.99660 * 231.68112 * 4 3 2 6 6 Si 1.86796 * 120.00337 * 51.67697 * 4 3 2 7 7 H 1.48504 * 109.46707 * 359.97438 * 6 4 3 8 8 H 1.48489 * 109.47267 * 119.99857 * 6 4 3 9 9 H 1.48503 * 109.47435 * 240.00398 * 6 4 3 10 10 N 1.46899 * 109.46870 * 64.99980 * 3 2 1 11 11 C 1.47844 * 111.00061 * 60.84933 * 10 3 2 12 12 C 1.54910 * 104.80018 * 146.36155 * 11 10 3 13 13 H 1.08992 * 111.02198 * 81.03580 * 12 11 10 14 14 O 1.42895 * 110.99258 * 204.84403 * 12 11 10 15 15 C 1.55146 * 101.64907 * 322.93167 * 12 11 10 16 16 C 1.47446 * 110.99922 * 181.68781 * 10 3 2 17 17 H 1.09001 * 109.88171 * 117.34240 * 16 10 3 18 18 C 1.52993 * 109.88947 * 356.15454 * 16 10 3 19 19 C 1.53000 * 109.47586 * 117.13197 * 18 16 10 20 20 C 1.52999 * 109.47086 * 237.13470 * 18 16 10 21 21 H 1.08994 * 109.47423 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46872 * 299.99789 * 1 2 3 23 23 H 1.09003 * 109.47011 * 59.99478 * 1 2 3 24 24 H 1.09001 * 109.47316 * 240.00094 * 2 1 3 25 25 H 1.09003 * 109.47406 * 119.99856 * 2 1 3 26 26 H 1.08998 * 109.47007 * 305.00438 * 3 2 1 27 27 H 0.97000 * 120.00600 * 70.05223 * 5 4 3 28 28 H 1.09007 * 110.37148 * 27.53312 * 11 10 3 29 29 H 1.08994 * 110.37682 * 265.19544 * 11 10 3 30 30 H 0.96704 * 113.99522 * 292.26403 * 14 12 11 31 31 H 1.08998 * 110.70086 * 154.03131 * 15 12 11 32 32 H 1.08995 * 110.70410 * 277.09239 * 15 12 11 33 33 H 1.09005 * 109.47224 * 357.13378 * 18 16 10 34 34 H 1.09000 * 109.47103 * 59.99656 * 19 18 16 35 35 H 1.08998 * 109.47431 * 180.02562 * 19 18 16 36 36 H 1.09003 * 109.46943 * 299.99973 * 19 18 16 37 37 H 1.08998 * 109.47220 * 176.30199 * 20 18 16 38 38 H 1.09006 * 109.46683 * 296.30057 * 20 18 16 39 39 H 1.08995 * 109.47586 * 56.29786 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5419 1.4443 -0.1239 5 7 4.2518 2.1065 0.7095 6 14 4.3673 0.4796 -1.4941 7 1 3.3319 -0.1959 -2.3169 8 1 5.1523 1.4063 -2.3485 9 1 5.2736 -0.5391 -0.9059 10 7 1.6514 2.0993 1.2552 11 6 2.2406 1.4059 2.4205 12 6 2.5235 2.5298 3.4483 13 1 1.6194 2.7955 3.9959 14 8 3.5696 2.1517 4.3454 15 6 2.9760 3.6918 2.5253 16 6 2.0922 3.5062 1.2740 17 1 1.2259 4.1653 1.3308 18 6 2.9030 3.8144 0.0137 19 6 2.1798 4.8821 -0.8097 20 6 4.2881 4.3285 0.4113 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6054 1.9816 -0.8418 27 1 4.3224 1.8094 1.6302 28 1 3.1683 0.9087 2.1370 29 1 1.5332 0.6855 2.8310 30 1 3.3334 1.4286 4.9425 31 1 2.7808 4.6557 2.9954 32 1 4.0318 3.5945 2.2726 33 1 3.0091 2.9071 -0.5811 34 1 2.0736 5.7894 -0.2150 35 1 2.7572 5.1014 -1.7078 36 1 1.1930 4.5159 -1.0930 37 1 4.8883 4.4858 -0.4848 38 1 4.1851 5.2707 0.9498 39 1 4.7775 3.5953 1.0524 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888106489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = 108.391834 kcal Electronic energy + Delta-G solvation = -18600.752333 eV Core-core repulsion = 16050.227610 eV Total energy + Delta-G solvation = -2550.524723 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.170 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.81325 -38.05920 -36.38793 -35.21222 -33.90698 -31.27051 -28.87300 -27.99531 -27.26586 -23.96160 -23.32276 -21.72757 -21.23356 -19.65111 -18.46233 -18.04010 -16.87212 -16.54568 -16.18537 -15.70132 -15.55484 -15.03148 -14.54869 -14.40229 -14.07352 -13.77082 -13.51120 -13.27370 -13.22352 -12.75886 -12.67335 -12.61232 -12.38362 -12.26559 -12.08051 -11.91956 -11.62002 -11.51300 -11.36459 -11.07273 -11.00070 -10.24528 -9.65586 -8.42380 0.01887 1.35334 1.63710 1.77143 1.99675 2.73549 3.37561 3.48096 3.52281 3.84252 3.87896 3.97788 4.07311 4.16259 4.21421 4.30543 4.42271 4.52034 4.58710 4.59045 4.70079 4.74080 4.79584 4.82839 4.89064 4.95776 4.96584 5.00583 5.10325 5.15562 5.21824 5.22806 5.32063 5.46638 5.54521 5.71746 5.92735 5.99730 6.77402 7.20224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.040 3.960 4 C 0.023 3.977 5 N -0.755 5.755 6 Si 1.030 2.970 7 H -0.232 1.232 8 H -0.267 1.267 9 H -0.255 1.255 10 N -0.506 5.506 11 C 0.006 3.994 12 C 0.092 3.908 13 H 0.072 0.928 14 O -0.575 6.575 15 C -0.155 4.155 16 C 0.083 3.917 17 H 0.079 0.921 18 C -0.131 4.131 19 C -0.150 4.150 20 C -0.152 4.152 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.390 0.610 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.397 0.603 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.043 0.957 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -3.362 -0.437 3.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.073 4.073 4 C -0.207 4.207 5 N -0.405 5.405 6 Si 0.846 3.154 7 H -0.155 1.155 8 H -0.192 1.192 9 H -0.179 1.179 10 N -0.230 5.230 11 C -0.122 4.122 12 C 0.032 3.968 13 H 0.090 0.910 14 O -0.383 6.383 15 C -0.192 4.192 16 C -0.025 4.025 17 H 0.097 0.903 18 C -0.150 4.150 19 C -0.208 4.208 20 C -0.208 4.208 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.131 0.869 27 H 0.234 0.766 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.248 0.752 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.834 -2.604 -1.331 3.041 hybrid contribution -0.364 0.252 1.225 1.303 sum -1.198 -2.352 -0.105 2.641 Atomic orbital electron populations 1.21621 0.94785 1.01339 1.02105 1.21674 0.97331 0.93599 1.03305 1.22661 0.93982 0.96750 0.93862 1.31586 0.96872 0.78795 1.13409 1.64298 1.59473 1.02138 1.14580 0.84414 0.79097 0.77342 0.74506 1.15460 1.19155 1.17880 1.63894 1.56004 1.01203 1.01928 1.23866 0.99357 0.97461 0.91553 1.22922 0.90067 0.93999 0.89821 0.91047 1.86481 1.40744 1.58527 1.52510 1.23466 1.02856 0.98058 0.94860 1.22374 0.95946 0.90357 0.93811 0.90321 1.22959 0.95284 1.00346 0.96458 1.21975 1.00361 0.98623 0.99804 1.22645 0.96821 0.99477 1.01906 0.92681 0.92672 0.92898 0.89772 0.91113 0.86897 0.76624 0.92085 0.89065 0.75228 0.91544 0.87971 0.86901 0.93382 0.92765 0.92308 0.93996 0.93829 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.41 9.80 71.98 0.71 1.11 16 2 C -0.12 0.51 4.92 30.60 0.15 0.66 16 3 C 0.04 -0.09 1.48 44.17 0.07 -0.02 16 4 C 0.02 -0.04 2.13 88.67 0.19 0.15 16 5 N -0.76 -0.56 5.09 4.34 0.02 -0.54 16 6 Si 1.03 -2.48 28.29 68.60 1.94 -0.53 16 7 H -0.23 1.10 6.53 99.48 0.65 1.75 16 8 H -0.27 -0.38 7.11 99.48 0.71 0.33 16 9 H -0.25 0.17 7.11 99.48 0.71 0.88 16 10 N -0.51 0.19 4.65 -839.88 -3.90 -3.72 16 11 C 0.01 -0.01 4.36 86.77 0.38 0.37 16 12 C 0.09 -0.01 4.26 31.98 0.14 0.12 16 13 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 14 O -0.57 -0.07 13.47 -148.98 -2.01 -2.08 16 15 C -0.15 -0.34 4.63 31.78 0.15 -0.19 16 16 C 0.08 0.13 3.35 45.25 0.15 0.28 16 17 H 0.08 0.26 7.63 -2.39 -0.02 0.24 16 18 C -0.13 -0.23 1.69 -10.80 -0.02 -0.24 16 19 C -0.15 -0.23 8.90 71.98 0.64 0.42 16 20 C -0.15 -0.55 6.84 71.98 0.49 -0.05 16 21 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 22 H 0.05 -0.03 7.75 -2.38 -0.02 -0.05 16 23 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.08 -0.52 5.94 -2.39 -0.01 -0.53 16 25 H 0.07 -0.34 6.96 -2.39 -0.02 -0.36 16 26 H 0.11 -0.25 7.14 -2.39 -0.02 -0.27 16 27 H 0.39 0.28 4.84 -92.71 -0.45 -0.17 16 28 H 0.06 -0.13 4.79 -2.38 -0.01 -0.15 16 29 H 0.09 -0.31 8.10 -2.39 -0.02 -0.33 16 30 H 0.40 -3.17 9.12 -74.05 -0.68 -3.84 16 31 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.10 0.38 3.69 -2.39 -0.01 0.37 16 33 H 0.11 0.09 2.41 -42.80 -0.10 -0.01 16 34 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.04 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.04 0.19 7.79 -2.38 -0.02 0.17 16 39 H 0.12 0.49 3.32 -77.50 -0.26 0.23 16 Total: 0.00 -5.20 269.23 -0.63 -5.83 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: 0.28 Total: -1.55 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 3.04 Total: 2.60 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -3.88 Total: -4.25 kcal Atomic # 8 Polarization: -0.07 SS G_CDS: -2.01 Total: -2.08 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: 1.94 Total: -0.53 kcal Total: -5.20 -0.63 -5.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.219 kcal (2) G-P(sol) polarization free energy of solvation -5.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds