Wall clock time and date at job start Mon Mar 30 2020 02:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47214 * 2 1 4 4 H 1.09005 * 109.46897 * 59.65183 * 3 2 1 5 5 C 1.50696 * 109.47389 * 179.65639 * 3 2 1 6 6 H 1.07997 * 120.00132 * 119.99840 * 5 3 2 7 7 C 1.37878 * 119.99793 * 300.00000 * 5 3 2 8 8 N 1.31513 * 120.00137 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00013 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47470 * 89.99981 * 9 7 5 11 11 H 1.48503 * 109.47311 * 210.00049 * 9 7 5 12 12 H 1.48498 * 109.47098 * 329.99658 * 9 7 5 13 13 N 1.46902 * 109.46836 * 299.65493 * 3 2 1 14 14 C 1.46894 * 111.00153 * 292.74988 * 13 3 2 15 15 C 1.53001 * 109.47434 * 162.33864 * 14 13 3 16 16 O 1.42906 * 109.47010 * 66.69875 * 15 14 13 17 17 C 1.42905 * 113.99683 * 184.90100 * 16 15 14 18 18 C 1.46902 * 110.99631 * 168.79554 * 13 3 2 19 19 C 1.52993 * 117.50050 * 355.38069 * 18 13 3 20 20 C 1.53005 * 117.49790 * 286.72331 * 18 13 3 21 21 H 1.08999 * 109.46912 * 305.03235 * 1 2 3 22 22 H 1.08994 * 109.47359 * 65.03199 * 1 2 3 23 23 H 1.09005 * 109.47101 * 185.03265 * 1 2 3 24 24 H 1.09000 * 109.47415 * 240.00109 * 2 1 3 25 25 H 1.09004 * 109.47458 * 119.99754 * 2 1 3 26 26 H 0.97003 * 120.00054 * 180.02562 * 8 7 5 27 27 H 1.09009 * 109.46957 * 282.33920 * 14 13 3 28 28 H 1.08998 * 109.47058 * 42.33545 * 14 13 3 29 29 H 1.08997 * 109.47387 * 186.70265 * 15 14 13 30 30 H 1.09001 * 109.46751 * 306.70782 * 15 14 13 31 31 H 1.09001 * 109.46719 * 300.00259 * 17 16 15 32 32 H 1.08998 * 109.46822 * 60.00448 * 17 16 15 33 33 H 1.09000 * 109.46549 * 180.02562 * 17 16 15 34 34 H 1.08996 * 115.54864 * 141.05618 * 18 13 3 35 35 H 1.09000 * 117.50415 * 0.02562 * 19 18 13 36 36 H 1.09005 * 117.49593 * 145.02158 * 19 18 13 37 37 H 1.08998 * 117.49615 * 214.97873 * 20 18 13 38 38 H 1.08992 * 117.50047 * 0.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6716 1.9582 0.8869 5 6 3.5470 1.4426 0.0085 6 1 4.0915 1.9086 -0.7993 7 6 4.2305 0.8476 1.0477 8 7 3.5673 0.2806 2.0317 9 14 6.0984 0.8483 1.0587 10 1 6.5890 2.0622 1.7595 11 1 6.5898 -0.3628 1.7638 12 1 6.6016 0.8459 -0.3384 13 7 1.5572 2.1326 -1.2036 14 6 2.1712 1.5713 -2.4143 15 6 1.3516 1.9820 -3.6393 16 8 1.4512 3.3952 -3.8270 17 6 0.6312 3.9005 -4.8826 18 6 1.7978 3.5789 -1.1134 19 6 2.3770 4.1184 0.1959 20 6 0.9123 4.3843 -0.1603 21 1 -0.3633 0.5899 0.8415 22 1 -0.3634 0.4338 -0.9316 23 1 -0.3633 -1.0237 0.0902 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 4.0482 -0.1377 2.7630 27 1 3.1887 1.9494 -2.5144 28 1 2.1933 0.4840 -2.3398 29 1 1.7357 1.4703 -4.5217 30 1 0.3076 1.7086 -3.4862 31 1 0.9186 3.4299 -5.8229 32 1 -0.4142 3.6772 -4.6692 33 1 0.7640 4.9795 -4.9610 34 1 2.1106 4.0621 -2.0390 35 1 2.5799 3.4002 0.9903 36 1 3.0707 4.9568 0.1317 37 1 0.6430 5.3974 -0.4588 38 1 0.1515 3.8409 0.4000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042518249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:41 Heat of formation + Delta-G solvation = -12.549373 kcal Electronic energy + Delta-G solvation = -17175.831428 eV Core-core repulsion = 14633.718039 eV Total energy + Delta-G solvation = -2542.113388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.51162 -37.02999 -34.25697 -32.37564 -31.06769 -28.47956 -26.31571 -25.65576 -23.00228 -21.80636 -21.34730 -20.44068 -18.25789 -16.35374 -16.01776 -15.73664 -15.34373 -14.66712 -14.42251 -13.93798 -13.20152 -12.89421 -12.62396 -12.02752 -11.92409 -11.62798 -11.36465 -11.16128 -11.07535 -10.82114 -10.67209 -10.52931 -10.27927 -9.89568 -9.82012 -9.64909 -9.36363 -9.27298 -9.11715 -8.75694 -8.31382 -6.93215 -5.94345 -4.06078 3.29494 3.36842 3.40070 4.18140 4.43210 4.78527 5.18413 5.31138 5.42150 5.52326 5.74955 5.79381 5.79882 5.90891 6.03493 6.11456 6.22247 6.36871 6.44677 6.47134 6.53080 6.68442 6.73289 6.78644 6.97507 7.13066 7.21626 7.31813 7.46275 7.54420 7.66751 7.81003 8.05575 8.21511 8.42113 8.54674 9.03619 9.60080 11.04471 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.009487 C = 0.008976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.138923 B = 2950.828694 C = 3118.518814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.208 3.792 4 H 0.044 0.956 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.504 5.504 14 C 0.067 3.933 15 C 0.065 3.935 16 O -0.383 6.383 17 C 0.032 3.968 18 C 0.045 3.955 19 C -0.201 4.201 20 C -0.193 4.193 21 H 0.038 0.962 22 H 0.046 0.954 23 H 0.024 0.976 24 H 0.032 0.968 25 H 0.091 0.909 26 H 0.260 0.740 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.818 3.572 -8.555 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.103 3.897 4 H 0.062 0.938 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.226 5.226 14 C -0.062 4.062 15 C -0.012 4.012 16 O -0.302 6.302 17 C -0.064 4.064 18 C -0.065 4.065 19 C -0.240 4.240 20 C -0.231 4.231 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.184 3.479 -8.306 10.391 hybrid contribution 1.742 -0.011 -0.036 1.743 sum -3.441 3.469 -8.342 9.667 Atomic orbital electron populations 1.21694 0.98902 0.98218 1.00590 1.21637 0.92113 0.99355 1.01924 1.19448 0.92469 0.90455 0.87376 0.93809 1.21744 0.92300 1.35845 1.07109 0.92482 1.24898 0.97848 0.95242 0.95567 1.69875 1.34957 1.37443 1.10391 0.86705 0.86531 0.77395 0.78027 1.20806 1.21370 1.20097 1.62189 1.56120 1.00778 1.03499 1.21967 0.95759 0.99906 0.88536 1.22775 1.00253 0.80718 0.97407 1.87940 1.65944 1.23135 1.53142 1.22640 0.94427 0.99368 0.90004 1.22528 1.01082 0.89315 0.93572 1.23560 0.94097 1.03271 1.03043 1.22980 0.94704 0.99604 1.05833 0.94270 0.93527 0.95700 0.94931 0.89036 0.92996 0.93824 0.89464 0.94281 0.93087 0.94952 0.94444 0.90433 0.86858 0.85984 0.91109 0.90616 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.68 37.16 0.36 -2.40 16 2 C -0.11 -2.60 5.10 -26.73 -0.14 -2.74 16 3 C 0.21 5.00 1.29 -68.86 -0.09 4.91 16 4 H 0.04 1.18 6.14 -51.93 -0.32 0.86 16 5 C -0.53 -13.80 5.85 -34.44 -0.20 -14.00 16 6 H 0.06 1.53 6.38 -52.49 -0.33 1.19 16 7 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 8 N -0.89 -24.56 11.32 55.43 0.63 -23.94 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.50 -10.65 3.92 -220.10 -0.86 -11.51 16 14 C 0.07 1.30 4.52 -3.83 -0.02 1.29 16 15 C 0.07 1.06 6.24 37.16 0.23 1.29 16 16 O -0.38 -6.28 7.84 -35.23 -0.28 -6.56 16 17 C 0.03 0.40 11.01 101.05 1.11 1.51 16 18 C 0.04 0.92 5.13 -67.71 -0.35 0.57 16 19 C -0.20 -4.23 8.79 -26.70 -0.23 -4.47 16 20 C -0.19 -3.67 10.25 -26.69 -0.27 -3.94 16 21 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.90 7.77 -51.93 -0.40 0.50 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.03 0.74 6.30 -51.93 -0.33 0.41 16 25 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.04 0.93 6.75 -51.92 -0.35 0.58 16 28 H 0.09 1.73 5.97 -51.93 -0.31 1.42 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 2.30 5.64 -51.93 -0.29 2.01 16 35 H 0.12 2.97 5.11 -51.93 -0.27 2.70 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 292.96 15.07 4.41 4.41 Total: -1.00 -27.05 292.96 -7.09 -34.14 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.28 Total: 3.68 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 0.31 Total: -16.30 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.24 Total: -35.45 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.28 Total: -6.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.05 -7.09 -34.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042518249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.588 kcal (2) G-P(sol) polarization free energy of solvation -27.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds