Wall clock time and date at job start Mon Mar 30 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46958 * 2 1 4 4 N 1.46902 * 109.47426 * 120.00402 * 2 1 3 5 5 C 1.46898 * 110.99647 * 298.43861 * 4 2 1 6 6 C 1.50701 * 109.47581 * 78.37737 * 5 4 2 7 7 H 1.08000 * 119.99354 * 357.25727 * 6 5 4 8 8 C 1.37870 * 120.00237 * 176.98445 * 6 5 4 9 9 N 1.31514 * 120.00266 * 180.27615 * 8 6 5 10 10 Si 1.86808 * 120.00179 * 0.27096 * 8 6 5 11 11 H 1.48507 * 109.46826 * 89.99984 * 10 8 6 12 12 H 1.48496 * 109.47343 * 210.00415 * 10 8 6 13 13 H 1.48496 * 109.46810 * 330.00599 * 10 8 6 14 14 C 1.46892 * 111.00056 * 174.48539 * 4 2 1 15 15 C 1.53003 * 109.46870 * 286.87972 * 14 4 2 16 16 H 1.08999 * 110.33031 * 309.11051 * 15 14 4 17 17 C 1.54482 * 110.37223 * 186.86020 * 15 14 4 18 18 C 1.54507 * 104.06283 * 217.18774 * 17 15 14 19 19 C 1.54477 * 104.06423 * 0.02562 * 18 17 15 20 20 O 1.44419 * 110.37519 * 71.36410 * 15 14 4 21 21 H 1.09000 * 109.46897 * 307.36375 * 1 2 3 22 22 H 1.08998 * 109.47445 * 67.36498 * 1 2 3 23 23 H 1.09003 * 109.47002 * 187.36757 * 1 2 3 24 24 H 1.09002 * 109.46659 * 240.00391 * 2 1 3 25 25 H 1.09002 * 109.46837 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47430 * 300.00215 * 3 2 1 27 27 H 1.09002 * 109.47117 * 60.00671 * 3 2 1 28 28 H 1.09006 * 109.47263 * 318.37276 * 5 4 2 29 29 H 1.09005 * 109.46927 * 198.37802 * 5 4 2 30 30 H 0.96996 * 120.00553 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.47531 * 46.87535 * 14 4 2 32 32 H 1.09005 * 109.47180 * 166.88095 * 14 4 2 33 33 H 1.08998 * 110.51048 * 335.83799 * 17 15 14 34 34 H 1.09007 * 110.51366 * 98.40477 * 17 15 14 35 35 H 1.09007 * 110.50945 * 118.64724 * 18 17 15 36 36 H 1.09004 * 110.51160 * 241.35046 * 18 17 15 37 37 H 1.09002 * 110.37430 * 142.81129 * 19 18 17 38 38 H 1.09007 * 110.36916 * 265.03428 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6926 1.1994 5 6 1.5795 -0.0053 2.4207 6 6 0.1401 -0.3522 2.7014 7 1 -0.4074 -0.9811 2.0150 8 6 -0.4761 0.1287 3.8371 9 7 -1.7307 -0.1784 4.0848 10 14 0.4709 1.2166 5.0243 11 1 0.3047 2.6392 4.6321 12 1 -0.0501 1.0183 6.4006 13 1 1.9111 0.8570 4.9836 14 6 3.4822 -0.8273 1.1692 15 6 3.8753 -1.8893 0.1403 16 1 3.3105 -2.8064 0.3079 17 6 5.3925 -2.1716 0.2116 18 6 5.8027 -2.3936 -1.2614 19 6 4.4850 -2.2186 -2.0485 20 8 3.6515 -1.3986 -1.1994 21 1 -0.3633 0.6237 0.8168 22 1 -0.3634 0.3955 -0.9485 23 1 -0.3633 -1.0192 0.1318 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6739 1.0722 2.2854 29 1 2.1997 -0.3218 3.2594 30 1 -2.1641 0.1596 4.8840 31 1 3.9296 0.1279 0.8943 32 1 3.8400 -1.1260 2.1546 33 1 5.9210 -1.3152 0.6304 34 1 5.5872 -3.0660 0.8035 35 1 6.5341 -1.6469 -1.5709 36 1 6.2001 -3.3991 -1.3998 37 1 4.6734 -1.7153 -2.9968 38 1 4.0143 -3.1866 -2.2204 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:04 Heat of formation + Delta-G solvation = -58.755316 kcal Electronic energy + Delta-G solvation = -16932.920748 eV Core-core repulsion = 14388.803719 eV Total energy + Delta-G solvation = -2544.117028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.59272 -38.91299 -34.64910 -33.34225 -32.62305 -31.26969 -29.02112 -27.85606 -25.54216 -23.81862 -22.67697 -21.76959 -20.21177 -18.87808 -17.65560 -16.61768 -16.51786 -16.36517 -16.21822 -15.55452 -14.90170 -14.57479 -14.47163 -14.13906 -13.42383 -13.35787 -13.09935 -12.95051 -12.80517 -12.53778 -12.48332 -12.38456 -11.95483 -11.90556 -11.83375 -11.69628 -11.41040 -11.18105 -10.94395 -10.66163 -10.55963 -8.86268 -8.17811 -6.15392 1.35214 1.36690 1.46418 2.39387 3.05966 3.12146 3.23619 3.77218 3.95720 4.08348 4.20890 4.27633 4.36431 4.38328 4.58575 4.61685 4.64018 4.77291 4.79941 4.90661 4.95043 4.97467 5.00650 5.03761 5.12409 5.17213 5.18971 5.26711 5.28778 5.58198 5.67534 5.78233 6.02772 6.17483 6.55805 6.78492 6.89860 7.43323 8.97853 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.007426 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.390290 B = 3769.864722 C = 4049.099218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 C -0.174 4.174 4 N -0.538 5.538 5 C 0.162 3.838 6 C -0.495 4.495 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.951 5.951 10 Si 0.935 3.065 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.251 1.251 14 C 0.053 3.947 15 C 0.084 3.916 16 H 0.060 0.940 17 C -0.146 4.146 18 C -0.145 4.145 19 C 0.032 3.968 20 O -0.389 6.389 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.032 0.968 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.041 0.959 28 H -0.001 1.001 29 H 0.021 0.979 30 H 0.262 0.738 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.612 -1.691 -10.165 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 C -0.232 4.232 4 N -0.261 5.261 5 C 0.035 3.965 6 C -0.533 4.533 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.594 5.594 10 Si 0.760 3.240 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.174 1.174 14 C -0.075 4.075 15 C 0.026 3.974 16 H 0.078 0.922 17 C -0.184 4.184 18 C -0.183 4.183 19 C -0.044 4.044 20 O -0.309 6.309 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.016 0.984 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.140 -1.969 -10.097 19.139 hybrid contribution 0.076 1.021 0.932 1.385 sum 16.216 -0.948 -9.165 18.651 Atomic orbital electron populations 1.21941 0.95717 1.00808 1.00236 1.21689 0.94707 0.92479 0.93368 1.22326 1.00921 0.98343 1.01615 1.62134 1.09618 1.51845 1.02547 1.20113 0.95071 0.92549 0.88788 1.21505 0.96007 1.29259 1.06542 0.92771 1.25739 0.95674 0.98168 0.99596 1.70042 1.13143 1.48040 1.28143 0.85887 0.80194 0.79495 0.78424 1.19755 1.21143 1.17445 1.22324 0.88629 0.97933 0.98597 1.23001 0.95616 0.96091 0.82704 0.92194 1.22944 0.93996 1.03246 0.98211 1.22891 0.97857 1.03721 0.93784 1.23603 0.90133 0.95530 0.95123 1.89151 1.66449 1.57632 1.17642 0.92944 0.92847 0.94858 0.88524 0.92294 0.91415 0.93965 0.98384 0.96050 0.92861 0.93898 0.90041 0.90405 0.89328 0.89969 0.88941 0.88188 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 7.70 71.98 0.55 -5.10 16 2 C 0.09 3.37 2.74 44.92 0.12 3.50 16 3 C -0.17 -6.12 8.60 71.98 0.62 -5.50 16 4 N -0.54 -22.75 4.43 -875.50 -3.88 -26.63 16 5 C 0.16 7.80 3.56 85.56 0.30 8.11 16 6 C -0.49 -28.45 7.33 25.60 0.19 -28.26 16 7 H 0.05 3.45 5.86 -2.91 -0.02 3.43 16 8 C 0.00 0.25 5.47 84.65 0.46 0.71 16 9 N -0.95 -60.11 13.96 21.44 0.30 -59.81 16 10 Si 0.94 44.67 27.53 68.60 1.89 46.56 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.25 -11.13 6.46 99.48 0.64 -10.49 16 14 C 0.05 1.79 4.59 86.31 0.40 2.19 16 15 C 0.08 2.38 3.41 31.10 0.11 2.49 16 16 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 17 C -0.15 -2.93 6.63 31.61 0.21 -2.72 16 18 C -0.14 -2.35 7.09 31.61 0.22 -2.12 16 19 C 0.03 0.66 7.63 72.48 0.55 1.21 16 20 O -0.39 -11.30 8.63 -148.98 -1.29 -12.59 16 21 H 0.05 2.63 5.91 -2.39 -0.01 2.62 16 22 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.03 1.57 7.17 -2.39 -0.02 1.55 16 24 H 0.10 3.67 5.34 -2.39 -0.01 3.66 16 25 H 0.06 1.91 6.30 -2.39 -0.02 1.89 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.04 1.64 6.03 -2.39 -0.01 1.63 16 28 H 0.00 -0.06 5.06 -2.38 -0.01 -0.08 16 29 H 0.02 1.03 6.44 -2.38 -0.02 1.01 16 30 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 31 H 0.04 1.39 5.97 -2.38 -0.01 1.38 16 32 H 0.08 2.63 7.63 -2.38 -0.02 2.61 16 33 H 0.08 1.50 7.87 -2.39 -0.02 1.48 16 34 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -66.34 283.00 1.73 -64.62 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.96 Total: 13.36 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 3.74 Total: -25.51 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -3.58 Total: -86.44 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.29 Total: -12.59 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.89 Total: 46.56 kcal Total: -66.34 1.73 -64.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.860 kcal (2) G-P(sol) polarization free energy of solvation -66.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds