Wall clock time and date at job start Mon Mar 30 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 N 1.46502 * 109.47175 * 182.84732 * 3 2 1 5 5 C 1.36942 * 120.00130 * 263.98714 * 4 3 2 6 6 H 1.07992 * 119.99918 * 190.43019 * 5 4 3 7 7 C 1.38816 * 119.99740 * 10.43473 * 5 4 3 8 8 N 1.31624 * 120.00246 * 26.88328 * 7 5 4 9 9 Si 1.86798 * 119.99858 * 206.88720 * 7 5 4 10 10 H 1.48498 * 109.47601 * 94.99028 * 9 7 5 11 11 H 1.48505 * 109.47036 * 214.99002 * 9 7 5 12 12 H 1.48499 * 109.47163 * 334.98814 * 9 7 5 13 13 C 1.46497 * 120.00023 * 83.99358 * 4 3 2 14 14 C 1.52999 * 109.47513 * 85.32888 * 13 4 3 15 15 C 1.53180 * 109.54333 * 64.77743 * 14 13 4 16 16 C 1.53086 * 109.16133 * 176.84588 * 15 14 13 17 17 O 1.42897 * 109.42121 * 302.39513 * 16 15 14 18 18 C 1.42903 * 114.09543 * 61.15634 * 17 16 15 19 19 C 1.53092 * 109.41587 * 298.84381 * 18 17 16 20 20 H 1.08995 * 109.46886 * 59.99352 * 1 2 3 21 21 H 1.08996 * 109.47506 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46866 * 300.00381 * 1 2 3 23 23 H 1.08999 * 109.47259 * 240.00215 * 2 1 3 24 24 H 1.08999 * 109.47257 * 120.00335 * 2 1 3 25 25 H 1.09003 * 109.47304 * 62.85094 * 3 2 1 26 26 H 1.09000 * 109.47150 * 302.84844 * 3 2 1 27 27 H 0.97001 * 119.99670 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46939 * 325.32631 * 13 4 3 29 29 H 1.08995 * 109.46972 * 205.33215 * 13 4 3 30 30 H 1.09003 * 109.61410 * 304.55905 * 14 13 4 31 31 H 1.08998 * 109.52566 * 296.75599 * 15 14 13 32 32 H 1.09002 * 109.51743 * 56.94613 * 15 14 13 33 33 H 1.09002 * 109.47678 * 182.40659 * 16 15 14 34 34 H 1.09002 * 109.47856 * 62.38374 * 16 15 14 35 35 H 1.09008 * 109.47725 * 178.86613 * 18 17 16 36 36 H 1.08993 * 109.49148 * 58.83214 * 18 17 16 37 37 H 1.09000 * 109.52242 * 297.70331 * 19 18 17 38 38 H 1.09001 * 109.52157 * 177.51716 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5035 1.4430 -0.0686 5 6 4.2427 1.5479 1.0793 6 1 5.3077 1.7176 1.0221 7 6 3.6231 1.4360 2.3165 8 7 2.5145 0.7367 2.4365 9 14 4.3627 2.2780 3.8110 10 1 3.7173 3.6015 4.0035 11 1 4.1375 1.4377 5.0145 12 1 5.8212 2.4641 3.6030 13 6 4.1760 1.3314 -1.3653 14 6 4.2994 2.7194 -1.9970 15 6 5.2145 3.5950 -1.1355 16 6 5.3951 4.9545 -1.8157 17 8 5.9317 4.7627 -3.1261 18 6 5.0964 3.9909 -3.9914 19 6 4.9039 2.5925 -3.3987 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.7191 1.9414 0.9145 26 1 1.6356 1.9708 -0.8633 27 1 2.0814 0.6589 3.3010 28 1 3.5945 0.6838 -2.0216 29 1 5.1699 0.9070 -1.2237 30 1 3.3135 3.1793 -2.0654 31 1 4.7643 3.7361 -0.1530 32 1 6.1849 3.1106 -1.0264 33 1 6.0797 5.5666 -1.2285 34 1 4.4299 5.4559 -1.8879 35 1 5.5660 3.9087 -4.9717 36 1 4.1273 4.4794 -4.0923 37 1 5.8680 2.0879 -3.3353 38 1 4.2315 2.0168 -4.0347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052172798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:31 Heat of formation + Delta-G solvation = -55.908965 kcal Electronic energy + Delta-G solvation = -16897.546815 eV Core-core repulsion = 14353.553214 eV Total energy + Delta-G solvation = -2543.993601 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31108 -38.09765 -35.24437 -33.69568 -32.39145 -31.84826 -28.22079 -27.33836 -24.73803 -24.31159 -22.80399 -21.72976 -20.59896 -18.59520 -17.08282 -16.96154 -16.77197 -15.85711 -15.55595 -15.49755 -15.11939 -14.82974 -14.29169 -14.13476 -13.57903 -13.39653 -13.13640 -12.75529 -12.59930 -12.53189 -12.25589 -12.15400 -12.01343 -11.93940 -11.78238 -11.52498 -11.23291 -11.06981 -10.93510 -10.44273 -10.26164 -8.71079 -7.74982 -5.05140 1.46903 1.51624 1.57146 2.57030 3.03692 3.29913 3.66955 3.92385 4.11754 4.14220 4.22922 4.38653 4.52351 4.56563 4.61736 4.65984 4.81558 4.83892 4.87087 4.93456 4.98264 5.04651 5.08197 5.16359 5.22272 5.31288 5.42557 5.52319 5.55607 5.60060 5.69291 5.86336 6.26681 6.32588 6.40610 7.28414 7.99695 8.41311 9.25457 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.009548 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.046601 B = 2931.796378 C = 3891.923224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.127 4.127 3 C 0.183 3.817 4 N -0.610 5.610 5 C -0.243 4.243 6 H 0.068 0.932 7 C -0.049 4.049 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.293 1.293 11 H -0.302 1.302 12 H -0.276 1.276 13 C 0.157 3.843 14 C -0.099 4.099 15 C -0.135 4.135 16 C 0.065 3.935 17 O -0.403 6.403 18 C 0.060 3.940 19 C -0.143 4.143 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.038 0.962 23 H 0.020 0.980 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.017 0.983 27 H 0.244 0.756 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 4.587 -10.663 11.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.058 3.942 4 N -0.331 5.331 5 C -0.373 4.373 6 H 0.085 0.915 7 C -0.244 4.244 8 N -0.557 5.557 9 Si 0.771 3.229 10 H -0.221 1.221 11 H -0.229 1.229 12 H -0.201 1.201 13 C 0.031 3.969 14 C -0.120 4.120 15 C -0.173 4.173 16 C -0.011 4.011 17 O -0.322 6.322 18 C -0.016 4.016 19 C -0.181 4.181 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.039 0.961 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.253 4.625 -10.583 11.617 hybrid contribution -0.019 0.006 1.393 1.394 sum 1.234 4.632 -9.189 10.364 Atomic orbital electron populations 1.21532 0.96168 1.00533 1.00388 1.22031 0.94870 0.99669 1.00091 1.20547 0.82078 0.94589 0.96999 1.44322 1.01992 1.85014 1.01788 1.19376 0.92336 1.40887 0.84704 0.91459 1.25239 0.98998 1.01102 0.99082 1.70279 1.22420 1.40063 1.22937 0.85628 0.78179 0.78566 0.80489 1.22091 1.22913 1.20083 1.20844 0.95604 0.94207 0.86276 1.21661 0.97903 0.97801 0.94649 1.22029 0.99284 0.96215 0.99743 1.22609 0.99058 0.96131 0.83336 1.87846 1.47662 1.73177 1.23548 1.22708 0.95058 0.90175 0.93654 1.22160 1.01622 0.98341 0.95975 0.92966 0.93170 0.94277 0.96102 0.91105 0.93413 0.96459 0.94670 0.94177 0.94458 0.92710 0.91843 0.93127 0.88424 0.93084 0.87061 0.92820 0.91709 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.91 71.98 0.71 -4.03 16 2 C -0.13 -5.68 5.82 30.59 0.18 -5.51 16 3 C 0.18 8.61 4.90 86.38 0.42 9.03 16 4 N -0.61 -29.18 2.33 -702.00 -1.64 -30.82 16 5 C -0.24 -12.83 8.07 84.03 0.68 -12.16 16 6 H 0.07 3.55 7.87 -2.91 -0.02 3.53 16 7 C -0.05 -2.66 4.81 84.86 0.41 -2.25 16 8 N -0.91 -50.91 8.64 21.65 0.19 -50.72 16 9 Si 0.94 44.55 29.63 68.60 2.03 46.59 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.16 6.22 5.17 86.38 0.45 6.66 16 14 C -0.10 -3.31 2.49 -10.68 -0.03 -3.34 16 15 C -0.13 -4.68 4.86 30.68 0.15 -4.53 16 16 C 0.07 1.89 6.84 72.01 0.49 2.39 16 17 O -0.40 -11.70 10.77 -148.98 -1.60 -13.31 16 18 C 0.06 1.43 6.84 72.01 0.49 1.92 16 19 C -0.14 -3.73 5.42 30.68 0.17 -3.56 16 20 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 23 H 0.02 0.88 8.02 -2.39 -0.02 0.86 16 24 H 0.07 3.74 6.00 -2.39 -0.01 3.72 16 25 H 0.05 2.54 6.07 -2.39 -0.01 2.53 16 26 H 0.02 0.74 8.08 -2.39 -0.02 0.72 16 27 H 0.24 13.48 8.31 -92.71 -0.77 12.71 16 28 H 0.04 1.51 7.99 -2.38 -0.02 1.49 16 29 H 0.04 1.52 8.00 -2.39 -0.02 1.51 16 30 H 0.05 1.91 8.11 -2.39 -0.02 1.89 16 31 H 0.06 2.57 6.83 -2.39 -0.02 2.56 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -57.80 294.52 4.09 -53.71 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.99 Total: 9.92 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 4.12 Total: -15.37 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.45 Total: -81.55 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.60 Total: -13.31 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.59 kcal Total: -57.80 4.09 -53.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052172798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.200 kcal (2) G-P(sol) polarization free energy of solvation -57.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds