Wall clock time and date at job start Mon Mar 30 2020 03:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 N 1.46897 * 109.46887 * 119.99843 * 2 1 3 5 5 C 1.46906 * 110.99690 * 155.00206 * 4 2 1 6 6 C 1.52996 * 109.47214 * 184.45911 * 5 4 2 7 7 O 1.42899 * 109.47194 * 65.56948 * 6 5 4 8 8 C 1.42898 * 114.00505 * 184.91619 * 7 6 5 9 9 C 1.53001 * 109.47716 * 184.92345 * 8 7 6 10 10 C 1.50696 * 115.54711 * 302.30983 * 9 8 7 11 11 H 1.08005 * 120.00302 * 99.50239 * 10 9 8 12 12 C 1.37875 * 120.00061 * 279.23094 * 10 9 8 13 13 N 1.31518 * 120.00010 * 355.38177 * 12 10 9 14 14 Si 1.86801 * 120.00317 * 175.38223 * 12 10 9 15 15 H 1.48499 * 109.46982 * 59.99888 * 14 12 10 16 16 H 1.48504 * 109.47354 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47227 * 300.00182 * 14 12 10 18 18 C 1.53000 * 117.51503 * 88.00667 * 9 8 7 19 19 C 1.52997 * 117.50141 * 156.63686 * 9 8 7 20 20 H 1.08996 * 109.47260 * 299.99997 * 1 2 3 21 21 H 1.09006 * 109.46808 * 60.00169 * 1 2 3 22 22 H 1.08995 * 109.46769 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47617 * 240.00375 * 2 1 3 24 24 H 1.09000 * 109.47317 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47294 * 300.00184 * 3 2 1 26 26 H 1.08999 * 109.46625 * 59.99768 * 3 2 1 27 27 H 1.00896 * 110.99971 * 31.05081 * 4 2 1 28 28 H 1.08998 * 109.47037 * 64.45945 * 5 4 2 29 29 H 1.08999 * 109.47140 * 304.46292 * 5 4 2 30 30 H 1.08999 * 109.47467 * 305.57510 * 6 5 4 31 31 H 1.08996 * 109.47679 * 185.56936 * 6 5 4 32 32 H 1.09001 * 109.47254 * 64.91931 * 8 7 6 33 33 H 1.09007 * 109.47099 * 304.92341 * 8 7 6 34 34 H 0.96998 * 120.00399 * 185.00700 * 13 12 10 35 35 H 1.09004 * 117.49745 * 214.97431 * 18 9 8 36 36 H 1.09000 * 117.50549 * 359.97438 * 18 9 8 37 37 H 1.09004 * 117.49632 * 359.97438 * 19 9 8 38 38 H 1.09001 * 117.49883 * 144.97840 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9807 6 6 3.7973 -2.0419 2.2075 7 8 2.9569 -3.1898 2.3416 8 6 3.2028 -3.9556 3.5228 9 6 2.3384 -5.2178 3.5017 10 6 0.8531 -4.9866 3.3941 11 1 0.3593 -5.0836 2.4385 12 6 0.1237 -4.6568 4.5166 13 7 0.7059 -4.6327 5.6956 14 14 -1.6917 -4.2440 4.3629 15 1 -2.4172 -5.4075 3.7927 16 1 -2.2427 -3.9271 5.7050 17 1 -1.8585 -3.0701 3.4689 18 6 2.9125 -6.4562 2.8106 19 6 2.8090 -6.4105 4.3365 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.3793 -1.4181 1.4847 28 1 4.0675 -0.4157 0.8208 29 1 3.3598 -1.8833 0.1042 30 1 3.7096 -1.4214 3.0994 31 1 4.8324 -2.3616 2.0876 32 1 2.9539 -3.3594 4.4007 33 1 4.2553 -4.2366 3.5611 34 1 0.1787 -4.4721 6.4938 35 1 2.2159 -7.1038 2.2782 36 1 3.9061 -6.3719 2.3705 37 1 3.7348 -6.2960 4.9004 38 1 2.0444 -7.0277 4.8081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:00 Heat of formation + Delta-G solvation = -34.381837 kcal Electronic energy + Delta-G solvation = -16241.642861 eV Core-core repulsion = 13698.582746 eV Total energy + Delta-G solvation = -2543.060115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.85373 -36.83322 -35.41986 -31.88314 -31.74993 -27.62657 -27.06862 -25.79377 -24.76378 -21.54626 -20.99631 -20.38178 -19.09042 -16.41317 -15.80722 -15.39249 -15.14897 -14.67409 -14.54556 -14.06761 -13.85488 -12.99746 -12.70461 -12.37846 -12.18375 -12.03515 -11.87559 -11.33657 -11.22243 -11.04869 -10.85626 -10.79109 -10.75317 -10.44520 -10.36616 -10.13160 -9.38092 -8.98661 -8.60977 -8.34213 -8.14153 -8.02752 -5.94786 -3.99248 3.36419 3.40768 3.44034 4.40255 4.44755 4.52395 5.05781 5.17136 5.34192 5.44445 5.46477 5.50400 5.66219 5.71400 5.80080 5.89544 5.92938 5.97680 6.09653 6.17211 6.24770 6.30794 6.35096 6.38663 6.46044 6.74684 6.77716 6.89047 7.12996 7.34243 7.47853 7.54652 7.77482 7.96864 8.21063 8.54656 8.99712 9.64732 11.13918 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.008367 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.523771 B = 3345.622234 C = 4299.696973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.077 3.923 3 C -0.138 4.138 4 N -0.686 5.686 5 C 0.067 3.933 6 C 0.057 3.943 7 O -0.372 6.372 8 C 0.112 3.888 9 C 0.044 3.956 10 C -0.478 4.478 11 H 0.058 0.942 12 C 0.069 3.931 13 N -0.886 5.886 14 Si 0.890 3.110 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.275 1.275 18 C -0.209 4.209 19 C -0.151 4.151 20 H 0.063 0.937 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.361 0.639 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 7.522 -8.134 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.033 4.033 3 C -0.196 4.196 4 N -0.321 5.321 5 C -0.062 4.062 6 C -0.021 4.021 7 O -0.291 6.291 8 C 0.036 3.964 9 C 0.044 3.956 10 C -0.516 4.516 11 H 0.076 0.924 12 C -0.133 4.133 13 N -0.524 5.524 14 Si 0.718 3.282 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.246 4.246 19 C -0.189 4.189 20 H 0.082 0.918 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.182 0.818 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.900 8.138 -7.768 11.907 hybrid contribution -0.866 -0.487 -0.287 1.034 sum 3.034 7.651 -8.055 11.516 Atomic orbital electron populations 1.21971 0.94872 1.02362 1.02078 1.21488 0.94815 0.95252 0.91763 1.21790 1.00706 0.95781 1.01295 1.60559 1.04302 1.34274 1.32969 1.21944 0.91577 0.96180 0.96491 1.22415 0.93336 0.88571 0.97738 1.87923 1.59277 1.37748 1.44122 1.22087 0.94668 0.93371 0.86304 1.18742 0.94328 0.84232 0.98320 1.20298 0.90063 1.46843 0.94375 0.92369 1.24950 0.98051 0.94911 0.95379 1.69969 1.35429 1.49417 0.97556 0.86695 0.85384 0.79051 0.77078 1.20487 1.21436 1.19999 1.22962 0.99935 1.06111 0.95618 1.22514 1.00395 1.04774 0.91202 0.91776 0.92396 0.92354 0.94304 0.93133 0.93090 0.92107 0.81848 0.90792 0.94802 0.93178 0.94230 0.93018 0.96924 0.93089 0.90507 0.91826 0.92053 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.18 37.16 0.34 -1.63 16 2 C 0.08 1.02 3.22 -67.71 -0.22 0.81 16 3 C -0.14 -1.58 9.42 37.16 0.35 -1.23 16 4 N -0.69 -11.02 6.34 -106.72 -0.68 -11.69 16 5 C 0.07 1.02 5.95 -3.82 -0.02 1.00 16 6 C 0.06 0.99 6.26 37.16 0.23 1.22 16 7 O -0.37 -8.18 9.61 -35.23 -0.34 -8.52 16 8 C 0.11 2.62 5.80 37.16 0.22 2.84 16 9 C 0.04 1.12 1.65 -155.66 -0.26 0.87 16 10 C -0.48 -13.34 8.61 -34.44 -0.30 -13.63 16 11 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 12 C 0.07 1.93 5.44 -17.82 -0.10 1.83 16 13 N -0.89 -25.38 12.85 55.43 0.71 -24.67 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.21 -4.74 9.94 -26.73 -0.27 -5.00 16 19 C -0.15 -3.62 9.42 -26.73 -0.25 -3.87 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 23 H 0.04 0.51 7.73 -51.93 -0.40 0.11 16 24 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.36 6.67 7.82 -39.29 -0.31 6.37 16 28 H 0.07 0.96 7.55 -51.93 -0.39 0.57 16 29 H 0.03 0.52 7.95 -51.93 -0.41 0.11 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.01 0.27 8.10 -51.92 -0.42 -0.15 16 34 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -28.65 315.06 -7.79 -36.44 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.94 Total: 3.98 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.27 Total: -16.80 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.04 Total: -36.36 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.34 Total: -8.52 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.65 -7.79 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.060 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds