Wall clock time and date at job start Mon Mar 30 2020 03:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 N 1.46897 * 109.46887 * 119.99843 * 2 1 3 5 5 C 1.46906 * 110.99690 * 155.00206 * 4 2 1 6 6 C 1.52996 * 109.47214 * 184.45911 * 5 4 2 7 7 O 1.42899 * 109.47194 * 65.56948 * 6 5 4 8 8 C 1.42898 * 114.00505 * 184.91619 * 7 6 5 9 9 C 1.53001 * 109.47716 * 184.92345 * 8 7 6 10 10 C 1.50696 * 115.54711 * 302.30983 * 9 8 7 11 11 H 1.08005 * 120.00302 * 99.50239 * 10 9 8 12 12 C 1.37875 * 120.00061 * 279.23094 * 10 9 8 13 13 N 1.31518 * 120.00010 * 355.38177 * 12 10 9 14 14 Si 1.86801 * 120.00317 * 175.38223 * 12 10 9 15 15 H 1.48499 * 109.46982 * 59.99888 * 14 12 10 16 16 H 1.48504 * 109.47354 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47227 * 300.00182 * 14 12 10 18 18 C 1.53000 * 117.51503 * 88.00667 * 9 8 7 19 19 C 1.52997 * 117.50141 * 156.63686 * 9 8 7 20 20 H 1.08996 * 109.47260 * 299.99997 * 1 2 3 21 21 H 1.09006 * 109.46808 * 60.00169 * 1 2 3 22 22 H 1.08995 * 109.46769 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47617 * 240.00375 * 2 1 3 24 24 H 1.09000 * 109.47317 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47294 * 300.00184 * 3 2 1 26 26 H 1.08999 * 109.46625 * 59.99768 * 3 2 1 27 27 H 1.00896 * 110.99971 * 31.05081 * 4 2 1 28 28 H 1.08998 * 109.47037 * 64.45945 * 5 4 2 29 29 H 1.08999 * 109.47140 * 304.46292 * 5 4 2 30 30 H 1.08999 * 109.47467 * 305.57510 * 6 5 4 31 31 H 1.08996 * 109.47679 * 185.56936 * 6 5 4 32 32 H 1.09001 * 109.47254 * 64.91931 * 8 7 6 33 33 H 1.09007 * 109.47099 * 304.92341 * 8 7 6 34 34 H 0.96998 * 120.00399 * 185.00700 * 13 12 10 35 35 H 1.09004 * 117.49745 * 214.97431 * 18 9 8 36 36 H 1.09000 * 117.50549 * 359.97438 * 18 9 8 37 37 H 1.09004 * 117.49632 * 359.97438 * 19 9 8 38 38 H 1.09001 * 117.49883 * 144.97840 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9807 6 6 3.7973 -2.0419 2.2075 7 8 2.9569 -3.1898 2.3416 8 6 3.2028 -3.9556 3.5228 9 6 2.3384 -5.2178 3.5017 10 6 0.8531 -4.9866 3.3941 11 1 0.3593 -5.0836 2.4385 12 6 0.1237 -4.6568 4.5166 13 7 0.7059 -4.6327 5.6956 14 14 -1.6917 -4.2440 4.3629 15 1 -2.4172 -5.4075 3.7927 16 1 -2.2427 -3.9271 5.7050 17 1 -1.8585 -3.0701 3.4689 18 6 2.9125 -6.4562 2.8106 19 6 2.8090 -6.4105 4.3365 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.3793 -1.4181 1.4847 28 1 4.0675 -0.4157 0.8208 29 1 3.3598 -1.8833 0.1042 30 1 3.7096 -1.4214 3.0994 31 1 4.8324 -2.3616 2.0876 32 1 2.9539 -3.3594 4.4007 33 1 4.2553 -4.2366 3.5611 34 1 0.1787 -4.4721 6.4938 35 1 2.2159 -7.1038 2.2782 36 1 3.9061 -6.3719 2.3705 37 1 3.7348 -6.2960 4.9004 38 1 2.0444 -7.0277 4.8081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:59 Heat of formation + Delta-G solvation = -52.056510 kcal Electronic energy + Delta-G solvation = -16242.409292 eV Core-core repulsion = 13698.582746 eV Total energy + Delta-G solvation = -2543.826546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42157 -38.26831 -37.04689 -33.96556 -32.99571 -28.97848 -28.12390 -27.65825 -26.64372 -23.00099 -22.71534 -21.43691 -21.04805 -18.27068 -17.28149 -16.96846 -16.57017 -16.43140 -15.99145 -15.74932 -15.17649 -14.74036 -14.17444 -13.72325 -13.50261 -13.27875 -13.12346 -12.93009 -12.82150 -12.72111 -12.59673 -12.32446 -12.16015 -12.00977 -11.87540 -11.61086 -11.27479 -10.91581 -10.44331 -10.30928 -9.93245 -9.34258 -8.06720 -6.16500 1.41412 1.44266 1.50514 2.44846 2.91465 3.21798 3.24507 3.59397 4.01748 4.09869 4.24993 4.34622 4.39098 4.44733 4.50723 4.57123 4.60188 4.69741 4.80766 4.82707 4.90838 4.96307 4.98017 5.00087 5.04240 5.08813 5.24594 5.28019 5.43261 5.59710 5.63729 5.81806 6.20630 6.40351 6.41291 6.63503 6.86354 7.49979 9.01130 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.008367 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.523771 B = 3345.622234 C = 4299.696973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.072 3.928 3 C -0.132 4.132 4 N -0.699 5.699 5 C 0.073 3.927 6 C 0.052 3.948 7 O -0.391 6.391 8 C 0.125 3.875 9 C 0.008 3.992 10 C -0.493 4.493 11 H 0.045 0.955 12 C 0.026 3.974 13 N -0.911 5.911 14 Si 0.946 3.054 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.186 4.186 19 C -0.151 4.151 20 H 0.055 0.945 21 H 0.081 0.919 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.342 0.658 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.035 0.965 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 8.301 -9.413 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.037 4.037 3 C -0.190 4.190 4 N -0.332 5.332 5 C -0.056 4.056 6 C -0.025 4.025 7 O -0.311 6.311 8 C 0.049 3.951 9 C 0.008 3.992 10 C -0.531 4.531 11 H 0.063 0.937 12 C -0.173 4.173 13 N -0.549 5.549 14 Si 0.772 3.228 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.223 4.223 19 C -0.189 4.189 20 H 0.074 0.926 21 H 0.100 0.900 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.160 0.840 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.483 8.928 -9.066 13.491 hybrid contribution -1.010 -0.711 0.063 1.237 sum 3.472 8.218 -9.003 12.675 Atomic orbital electron populations 1.21962 0.94631 1.01580 1.02869 1.21636 0.95159 0.96117 0.90788 1.21746 1.00945 0.94332 1.01942 1.60663 1.04340 1.33608 1.34617 1.21983 0.91775 0.96686 0.95186 1.22668 0.94022 0.87292 0.98481 1.87887 1.60891 1.39130 1.43178 1.21772 0.95301 0.92280 0.85797 1.18932 0.93774 0.85912 1.00584 1.20523 0.91851 1.46894 0.93871 0.93681 1.25588 1.01783 0.94856 0.95121 1.70064 1.36664 1.50266 0.97949 0.85811 0.81045 0.78889 0.77103 1.19876 1.21015 1.19749 1.22964 1.00928 1.03759 0.94641 1.22424 1.00374 1.03808 0.92262 0.92578 0.89981 0.93908 0.93903 0.92695 0.90963 0.92936 0.83993 0.88072 0.94945 0.93981 0.91881 0.96059 0.94648 0.93192 0.90641 0.89133 0.90420 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.18 71.98 0.66 -3.06 16 2 C 0.07 1.82 3.22 44.92 0.14 1.96 16 3 C -0.13 -2.72 9.42 71.98 0.68 -2.04 16 4 N -0.70 -21.94 6.34 -491.56 -3.12 -25.06 16 5 C 0.07 2.09 5.95 86.30 0.51 2.60 16 6 C 0.05 1.75 6.26 71.98 0.45 2.20 16 7 O -0.39 -17.07 9.61 -148.98 -1.43 -18.50 16 8 C 0.13 5.82 5.80 71.98 0.42 6.24 16 9 C 0.01 0.42 1.65 -52.93 -0.09 0.34 16 10 C -0.49 -27.87 8.61 25.60 0.22 -27.65 16 11 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 12 C 0.03 1.47 5.44 84.65 0.46 1.93 16 13 N -0.91 -52.90 12.85 21.45 0.28 -52.63 16 14 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 18 C -0.19 -8.15 9.94 30.59 0.30 -7.85 16 19 C -0.15 -7.15 9.42 30.59 0.29 -6.86 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 21 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 23 H 0.04 1.05 7.73 -2.39 -0.02 1.03 16 24 H 0.05 1.08 7.54 -2.39 -0.02 1.06 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.34 12.80 7.82 -89.70 -0.70 12.10 16 28 H 0.10 2.36 7.55 -2.39 -0.02 2.34 16 29 H 0.03 0.94 7.95 -2.39 -0.02 0.92 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 1.46 8.10 -2.38 -0.02 1.44 16 34 H 0.26 14.44 8.32 -92.71 -0.77 13.66 16 35 H 0.07 3.29 8.14 -2.39 -0.02 3.28 16 36 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -60.93 315.06 2.10 -58.83 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.30 Total: 22.88 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 4.05 Total: -32.19 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -2.84 Total: -77.69 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -1.43 Total: -18.50 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -60.93 2.10 -58.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.771 kcal (2) G-P(sol) polarization free energy of solvation -60.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds