Wall clock time and date at job start Mon Mar 30 2020 03:27:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52998 * 109.47096 * 2 1
4 4 N 1.46900 * 109.47464 * 179.97438 * 3 2 1
5 5 C 1.46899 * 111.00255 * 179.97438 * 4 3 2
6 6 C 1.52994 * 109.47091 * 205.00096 * 5 4 3
7 7 C 1.52999 * 109.47026 * 180.02562 * 6 5 4
8 8 C 1.53001 * 109.47510 * 59.99561 * 7 6 5
9 9 O 1.42903 * 109.46497 * 60.00249 * 8 7 6
10 10 C 1.34929 * 116.99828 * 150.00446 * 9 8 7
11 11 H 1.08009 * 119.99714 * 0.26611 * 10 9 8
12 12 C 1.38635 * 120.00101 * 179.97438 * 10 9 8
13 13 N 1.31581 * 119.99891 * 359.97438 * 12 10 9
14 14 Si 1.86803 * 119.99861 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.46986 * 90.00059 * 14 12 10
16 16 H 1.48496 * 109.47029 * 210.00075 * 14 12 10
17 17 H 1.48499 * 109.47352 * 329.99905 * 14 12 10
18 18 C 1.52993 * 109.47022 * 300.00468 * 8 7 6
19 19 C 1.52996 * 109.46863 * 85.00126 * 5 4 3
20 20 H 1.08996 * 109.47258 * 299.99898 * 1 2 3
21 21 H 1.09000 * 109.46923 * 60.00566 * 1 2 3
22 22 H 1.09009 * 109.46616 * 180.02562 * 1 2 3
23 23 H 1.08996 * 109.47606 * 239.99684 * 2 1 3
24 24 H 1.09000 * 109.46923 * 119.99434 * 2 1 3
25 25 H 1.09004 * 109.47475 * 59.99516 * 3 2 1
26 26 H 1.09009 * 109.46765 * 299.99734 * 3 2 1
27 27 H 1.00897 * 110.99773 * 303.95188 * 4 3 2
28 28 H 1.08999 * 109.47049 * 325.00174 * 5 4 3
29 29 H 1.08999 * 109.47301 * 59.99724 * 6 5 4
30 30 H 1.08999 * 109.47238 * 299.99963 * 6 5 4
31 31 H 1.08999 * 109.47120 * 299.99438 * 7 6 5
32 32 H 1.09005 * 109.47534 * 180.02562 * 7 6 5
33 33 H 1.09000 * 109.47019 * 179.97438 * 8 7 6
34 34 H 0.97000 * 119.99571 * 179.97438 * 13 12 10
35 35 H 1.09003 * 109.46729 * 179.97438 * 18 8 7
36 36 H 1.08999 * 109.47215 * 299.99566 * 18 8 7
37 37 H 1.09009 * 109.47300 * 299.99693 * 19 5 4
38 38 H 1.08999 * 109.47507 * 59.99685 * 19 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5090 1.4426 0.0006
5 6 4.0354 2.8140 0.0000
6 6 5.4389 2.8213 -0.6090
7 6 5.9874 4.2496 -0.6090
8 6 6.0522 4.7711 0.8279
9 8 6.9115 3.9309 1.6011
10 6 7.5749 4.5090 2.6240
11 1 7.4402 5.5608 2.8293
12 6 8.4247 3.7515 3.4153
13 7 8.5840 2.4688 3.1690
14 14 9.3437 4.5520 4.8310
15 1 8.5224 4.4670 6.0653
16 1 10.6334 3.8479 5.0451
17 1 9.6057 5.9776 4.5080
18 6 4.6487 4.7638 1.4368
19 6 4.1002 3.3360 1.4367
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 0.5137 -0.8900
22 1 -0.3633 -1.0278 0.0005
23 1 1.8934 -0.5138 -0.8899
24 1 1.8933 -0.5137 0.8900
25 1 1.6766 1.9564 0.8899
26 1 1.6767 1.9563 -0.8901
27 1 3.8703 0.9166 0.7822
28 1 3.3800 3.4545 -0.5900
29 1 5.3928 2.4493 -1.6325
30 1 6.0944 2.1808 -0.0189
31 1 5.3321 4.8904 -1.1989
32 1 6.9872 4.2549 -1.0434
33 1 6.4434 5.7885 0.8278
34 1 9.1789 1.9390 3.7224
35 1 4.6951 5.1349 2.4607
36 1 3.9934 5.4046 0.8470
37 1 3.1002 3.3308 1.8707
38 1 4.7556 2.6954 2.0269
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000164135718.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:36
Heat of formation + Delta-G solvation = -63.541822 kcal
Electronic energy + Delta-G solvation = -16384.586036 eV
Core-core repulsion = 13840.261450 eV
Total energy + Delta-G solvation = -2544.324587 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-38.68923 -36.39335 -34.50105 -32.25245 -31.12107 -30.08414 -27.84099 -24.70368
-24.21402 -22.04095 -21.30703 -20.87207 -18.98762 -17.35594 -15.80136 -15.19237
-15.04464 -14.63167 -14.13788 -13.87160 -13.72260 -13.21580 -12.70217 -12.55889
-12.26563 -11.98930 -11.60781 -11.51966 -11.49287 -11.13197 -11.10452 -10.87804
-10.75363 -10.53108 -10.32521 -10.22076 -10.01475 -9.54195 -9.22712 -8.95724
-8.02849 -7.89115 -5.90216 -3.52012 3.32504 3.35857 3.39234 4.33799
4.40127 4.97324 5.07601 5.29056 5.34008 5.36024 5.48563 5.53575
5.58799 5.71651 5.76669 5.79558 5.91597 5.94093 5.96816 6.08382
6.15855 6.17989 6.25103 6.26958 6.43849 6.58245 6.59235 6.76707
6.91727 6.95191 7.09888 7.20927 7.45435 7.52337 7.71366 8.48256
9.53964 10.25218 11.30740
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.035473 B = 0.005964 C = 0.005588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 789.132484 B = 4693.962264 C = 5009.528379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.124 4.124
3 C 0.058 3.942
4 N -0.689 5.689
5 C 0.094 3.906
6 C -0.098 4.098
7 C -0.110 4.110
8 C 0.094 3.906
9 O -0.279 6.279
10 C -0.356 4.356
11 H 0.059 0.941
12 C 0.023 3.977
13 N -0.889 5.889
14 Si 0.919 3.081
15 H -0.283 1.283
16 H -0.284 1.284
17 H -0.277 1.277
18 C -0.130 4.130
19 C -0.136 4.136
20 H 0.051 0.949
21 H 0.053 0.947
22 H 0.053 0.947
23 H 0.069 0.931
24 H 0.060 0.940
25 H 0.026 0.974
26 H 0.066 0.934
27 H 0.343 0.657
28 H 0.063 0.937
29 H 0.053 0.947
30 H 0.079 0.921
31 H 0.055 0.945
32 H 0.064 0.936
33 H 0.036 0.964
34 H 0.256 0.744
35 H 0.059 0.941
36 H 0.047 0.953
37 H 0.041 0.959
38 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.370 -0.641 -5.943 13.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.162 4.162
3 C -0.071 4.071
4 N -0.319 5.319
5 C -0.015 4.015
6 C -0.136 4.136
7 C -0.148 4.148
8 C 0.034 3.966
9 O -0.194 6.194
10 C -0.436 4.436
11 H 0.077 0.923
12 C -0.175 4.175
13 N -0.532 5.532
14 Si 0.747 3.253
15 H -0.209 1.209
16 H -0.210 1.210
17 H -0.202 1.202
18 C -0.169 4.169
19 C -0.175 4.175
20 H 0.071 0.929
21 H 0.072 0.928
22 H 0.072 0.928
23 H 0.088 0.912
24 H 0.079 0.921
25 H 0.044 0.956
26 H 0.084 0.916
27 H 0.162 0.838
28 H 0.082 0.918
29 H 0.072 0.928
30 H 0.098 0.902
31 H 0.073 0.927
32 H 0.082 0.918
33 H 0.054 0.946
34 H 0.066 0.934
35 H 0.078 0.922
36 H 0.066 0.934
37 H 0.060 0.940
38 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -12.213 -1.056 -6.619 13.932
hybrid contribution 0.188 1.017 1.834 2.105
sum -12.026 -0.039 -4.785 12.943
Atomic orbital electron populations
1.21730 0.95936 1.01473 1.01640 1.21514 0.95211 0.96876 1.02563
1.21983 0.88686 0.96404 1.00029 1.60642 1.06372 1.14599 1.50262
1.21541 0.96474 0.87993 0.95492 1.21332 0.95056 0.97180 1.00062
1.21559 1.00590 0.96505 0.96111 1.21734 0.90042 0.93828 0.90946
1.85692 1.57139 1.33471 1.43058 1.20870 1.22324 0.93370 1.07027
0.92318 1.24882 0.98425 0.95568 0.98640 1.70011 1.38349 1.05381
1.39468 0.86051 0.79133 0.78496 0.81609 1.20909 1.20978 1.20175
1.21935 0.97967 0.95955 1.01054 1.22040 0.99474 0.98524 0.97480
0.92941 0.92807 0.92758 0.91245 0.92142 0.95596 0.91595 0.83826
0.91827 0.92785 0.90185 0.92676 0.91770 0.94611 0.93389 0.92209
0.93438 0.94028 0.90032
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16
2 C -0.12 -1.35 6.19 -26.73 -0.17 -1.52 16
3 C 0.06 0.74 5.48 -3.83 -0.02 0.72 16
4 N -0.69 -10.46 6.25 -106.73 -0.67 -11.13 16
5 C 0.09 1.56 2.47 -67.72 -0.17 1.40 16
6 C -0.10 -1.80 5.38 -26.73 -0.14 -1.94 16
7 C -0.11 -2.03 5.66 -26.73 -0.15 -2.18 16
8 C 0.09 2.04 2.96 -26.73 -0.08 1.96 16
9 O -0.28 -7.69 8.08 -16.51 -0.13 -7.83 16
10 C -0.36 -10.34 9.77 30.88 0.30 -10.04 16
11 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16
12 C 0.02 0.66 5.49 -17.51 -0.10 0.57 16
13 N -0.89 -27.64 13.67 55.48 0.76 -26.88 16
14 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16
15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16
18 C -0.13 -2.49 5.63 -26.76 -0.15 -2.65 16
19 C -0.14 -2.49 5.02 -26.76 -0.13 -2.63 16
20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
22 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16
23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
25 H 0.03 0.34 7.44 -51.93 -0.39 -0.05 16
26 H 0.07 0.81 8.06 -51.92 -0.42 0.40 16
27 H 0.34 5.42 8.47 -39.29 -0.33 5.08 16
28 H 0.06 0.99 7.80 -51.93 -0.40 0.59 16
29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16
30 H 0.08 1.75 7.68 -51.93 -0.40 1.35 16
31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
33 H 0.04 0.78 7.80 -51.93 -0.41 0.37 16
34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
37 H 0.04 0.69 7.45 -51.92 -0.39 0.30 16
38 H 0.08 1.79 7.67 -51.93 -0.40 1.39 16
LS Contribution 302.60 15.07 4.56 4.56
Total: -1.00 -30.91 302.60 -7.84 -38.75
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: -6.90 Total: 2.69 kcal
Atomic # 6 Polarization: -16.87 SS G_CDS: -0.44 Total: -17.30 kcal
Atomic # 7 Polarization: -38.10 SS G_CDS: 0.09 Total: -38.01 kcal
Atomic # 8 Polarization: -7.69 SS G_CDS: -0.13 Total: -7.83 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -30.91 -7.84 -38.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000164135718.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.794 kcal
(2) G-P(sol) polarization free energy of solvation -30.909 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.703 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.542 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds