Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47096 * 2 1 4 4 N 1.46900 * 109.47464 * 179.97438 * 3 2 1 5 5 C 1.46899 * 111.00255 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47091 * 205.00096 * 5 4 3 7 7 C 1.52999 * 109.47026 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47510 * 59.99561 * 7 6 5 9 9 O 1.42903 * 109.46497 * 60.00249 * 8 7 6 10 10 C 1.34929 * 116.99828 * 150.00446 * 9 8 7 11 11 H 1.08009 * 119.99714 * 0.26611 * 10 9 8 12 12 C 1.38635 * 120.00101 * 179.97438 * 10 9 8 13 13 N 1.31581 * 119.99891 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99861 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46986 * 90.00059 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00075 * 14 12 10 17 17 H 1.48499 * 109.47352 * 329.99905 * 14 12 10 18 18 C 1.52993 * 109.47022 * 300.00468 * 8 7 6 19 19 C 1.52996 * 109.46863 * 85.00126 * 5 4 3 20 20 H 1.08996 * 109.47258 * 299.99898 * 1 2 3 21 21 H 1.09000 * 109.46923 * 60.00566 * 1 2 3 22 22 H 1.09009 * 109.46616 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47606 * 239.99684 * 2 1 3 24 24 H 1.09000 * 109.46923 * 119.99434 * 2 1 3 25 25 H 1.09004 * 109.47475 * 59.99516 * 3 2 1 26 26 H 1.09009 * 109.46765 * 299.99734 * 3 2 1 27 27 H 1.00897 * 110.99773 * 303.95188 * 4 3 2 28 28 H 1.08999 * 109.47049 * 325.00174 * 5 4 3 29 29 H 1.08999 * 109.47301 * 59.99724 * 6 5 4 30 30 H 1.08999 * 109.47238 * 299.99963 * 6 5 4 31 31 H 1.08999 * 109.47120 * 299.99438 * 7 6 5 32 32 H 1.09005 * 109.47534 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47019 * 179.97438 * 8 7 6 34 34 H 0.97000 * 119.99571 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.46729 * 179.97438 * 18 8 7 36 36 H 1.08999 * 109.47215 * 299.99566 * 18 8 7 37 37 H 1.09009 * 109.47300 * 299.99693 * 19 5 4 38 38 H 1.08999 * 109.47507 * 59.99685 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0354 2.8140 0.0000 6 6 5.4389 2.8213 -0.6090 7 6 5.9874 4.2496 -0.6090 8 6 6.0522 4.7711 0.8279 9 8 6.9115 3.9309 1.6011 10 6 7.5749 4.5090 2.6240 11 1 7.4402 5.5608 2.8293 12 6 8.4247 3.7515 3.4153 13 7 8.5840 2.4688 3.1690 14 14 9.3437 4.5520 4.8310 15 1 8.5224 4.4670 6.0653 16 1 10.6334 3.8479 5.0451 17 1 9.6057 5.9776 4.5080 18 6 4.6487 4.7638 1.4368 19 6 4.1002 3.3360 1.4367 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6767 1.9563 -0.8901 27 1 3.8703 0.9166 0.7822 28 1 3.3800 3.4545 -0.5900 29 1 5.3928 2.4493 -1.6325 30 1 6.0944 2.1808 -0.0189 31 1 5.3321 4.8904 -1.1989 32 1 6.9872 4.2549 -1.0434 33 1 6.4434 5.7885 0.8278 34 1 9.1789 1.9390 3.7224 35 1 4.6951 5.1349 2.4607 36 1 3.9934 5.4046 0.8470 37 1 3.1002 3.3308 1.8707 38 1 4.7556 2.6954 2.0269 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164135718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -63.541822 kcal Electronic energy + Delta-G solvation = -16384.586036 eV Core-core repulsion = 13840.261450 eV Total energy + Delta-G solvation = -2544.324587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.68923 -36.39335 -34.50105 -32.25245 -31.12107 -30.08414 -27.84099 -24.70368 -24.21402 -22.04095 -21.30703 -20.87207 -18.98762 -17.35594 -15.80136 -15.19237 -15.04464 -14.63167 -14.13788 -13.87160 -13.72260 -13.21580 -12.70217 -12.55889 -12.26563 -11.98930 -11.60781 -11.51966 -11.49287 -11.13197 -11.10452 -10.87804 -10.75363 -10.53108 -10.32521 -10.22076 -10.01475 -9.54195 -9.22712 -8.95724 -8.02849 -7.89115 -5.90216 -3.52012 3.32504 3.35857 3.39234 4.33799 4.40127 4.97324 5.07601 5.29056 5.34008 5.36024 5.48563 5.53575 5.58799 5.71651 5.76669 5.79558 5.91597 5.94093 5.96816 6.08382 6.15855 6.17989 6.25103 6.26958 6.43849 6.58245 6.59235 6.76707 6.91727 6.95191 7.09888 7.20927 7.45435 7.52337 7.71366 8.48256 9.53964 10.25218 11.30740 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035473 B = 0.005964 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.132484 B = 4693.962264 C = 5009.528379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.689 5.689 5 C 0.094 3.906 6 C -0.098 4.098 7 C -0.110 4.110 8 C 0.094 3.906 9 O -0.279 6.279 10 C -0.356 4.356 11 H 0.059 0.941 12 C 0.023 3.977 13 N -0.889 5.889 14 Si 0.919 3.081 15 H -0.283 1.283 16 H -0.284 1.284 17 H -0.277 1.277 18 C -0.130 4.130 19 C -0.136 4.136 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.026 0.974 26 H 0.066 0.934 27 H 0.343 0.657 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.256 0.744 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.370 -0.641 -5.943 13.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.071 4.071 4 N -0.319 5.319 5 C -0.015 4.015 6 C -0.136 4.136 7 C -0.148 4.148 8 C 0.034 3.966 9 O -0.194 6.194 10 C -0.436 4.436 11 H 0.077 0.923 12 C -0.175 4.175 13 N -0.532 5.532 14 Si 0.747 3.253 15 H -0.209 1.209 16 H -0.210 1.210 17 H -0.202 1.202 18 C -0.169 4.169 19 C -0.175 4.175 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.162 0.838 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.213 -1.056 -6.619 13.932 hybrid contribution 0.188 1.017 1.834 2.105 sum -12.026 -0.039 -4.785 12.943 Atomic orbital electron populations 1.21730 0.95936 1.01473 1.01640 1.21514 0.95211 0.96876 1.02563 1.21983 0.88686 0.96404 1.00029 1.60642 1.06372 1.14599 1.50262 1.21541 0.96474 0.87993 0.95492 1.21332 0.95056 0.97180 1.00062 1.21559 1.00590 0.96505 0.96111 1.21734 0.90042 0.93828 0.90946 1.85692 1.57139 1.33471 1.43058 1.20870 1.22324 0.93370 1.07027 0.92318 1.24882 0.98425 0.95568 0.98640 1.70011 1.38349 1.05381 1.39468 0.86051 0.79133 0.78496 0.81609 1.20909 1.20978 1.20175 1.21935 0.97967 0.95955 1.01054 1.22040 0.99474 0.98524 0.97480 0.92941 0.92807 0.92758 0.91245 0.92142 0.95596 0.91595 0.83826 0.91827 0.92785 0.90185 0.92676 0.91770 0.94611 0.93389 0.92209 0.93438 0.94028 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.35 6.19 -26.73 -0.17 -1.52 16 3 C 0.06 0.74 5.48 -3.83 -0.02 0.72 16 4 N -0.69 -10.46 6.25 -106.73 -0.67 -11.13 16 5 C 0.09 1.56 2.47 -67.72 -0.17 1.40 16 6 C -0.10 -1.80 5.38 -26.73 -0.14 -1.94 16 7 C -0.11 -2.03 5.66 -26.73 -0.15 -2.18 16 8 C 0.09 2.04 2.96 -26.73 -0.08 1.96 16 9 O -0.28 -7.69 8.08 -16.51 -0.13 -7.83 16 10 C -0.36 -10.34 9.77 30.88 0.30 -10.04 16 11 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16 12 C 0.02 0.66 5.49 -17.51 -0.10 0.57 16 13 N -0.89 -27.64 13.67 55.48 0.76 -26.88 16 14 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 C -0.13 -2.49 5.63 -26.76 -0.15 -2.65 16 19 C -0.14 -2.49 5.02 -26.76 -0.13 -2.63 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.34 7.44 -51.93 -0.39 -0.05 16 26 H 0.07 0.81 8.06 -51.92 -0.42 0.40 16 27 H 0.34 5.42 8.47 -39.29 -0.33 5.08 16 28 H 0.06 0.99 7.80 -51.93 -0.40 0.59 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.75 7.68 -51.93 -0.40 1.35 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.04 0.78 7.80 -51.93 -0.41 0.37 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.69 7.45 -51.92 -0.39 0.30 16 38 H 0.08 1.79 7.67 -51.93 -0.40 1.39 16 LS Contribution 302.60 15.07 4.56 4.56 Total: -1.00 -30.91 302.60 -7.84 -38.75 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.90 Total: 2.69 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.44 Total: -17.30 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.09 Total: -38.01 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.13 Total: -7.83 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.91 -7.84 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164135718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.794 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds