Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47096 * 2 1 4 4 N 1.46900 * 109.47464 * 179.97438 * 3 2 1 5 5 C 1.46899 * 111.00255 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47091 * 205.00096 * 5 4 3 7 7 C 1.52999 * 109.47026 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47510 * 59.99561 * 7 6 5 9 9 O 1.42903 * 109.46497 * 60.00249 * 8 7 6 10 10 C 1.34929 * 116.99828 * 150.00446 * 9 8 7 11 11 H 1.08009 * 119.99714 * 0.26611 * 10 9 8 12 12 C 1.38635 * 120.00101 * 179.97438 * 10 9 8 13 13 N 1.31581 * 119.99891 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99861 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46986 * 90.00059 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00075 * 14 12 10 17 17 H 1.48499 * 109.47352 * 329.99905 * 14 12 10 18 18 C 1.52993 * 109.47022 * 300.00468 * 8 7 6 19 19 C 1.52996 * 109.46863 * 85.00126 * 5 4 3 20 20 H 1.08996 * 109.47258 * 299.99898 * 1 2 3 21 21 H 1.09000 * 109.46923 * 60.00566 * 1 2 3 22 22 H 1.09009 * 109.46616 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47606 * 239.99684 * 2 1 3 24 24 H 1.09000 * 109.46923 * 119.99434 * 2 1 3 25 25 H 1.09004 * 109.47475 * 59.99516 * 3 2 1 26 26 H 1.09009 * 109.46765 * 299.99734 * 3 2 1 27 27 H 1.00897 * 110.99773 * 303.95188 * 4 3 2 28 28 H 1.08999 * 109.47049 * 325.00174 * 5 4 3 29 29 H 1.08999 * 109.47301 * 59.99724 * 6 5 4 30 30 H 1.08999 * 109.47238 * 299.99963 * 6 5 4 31 31 H 1.08999 * 109.47120 * 299.99438 * 7 6 5 32 32 H 1.09005 * 109.47534 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47019 * 179.97438 * 8 7 6 34 34 H 0.97000 * 119.99571 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.46729 * 179.97438 * 18 8 7 36 36 H 1.08999 * 109.47215 * 299.99566 * 18 8 7 37 37 H 1.09009 * 109.47300 * 299.99693 * 19 5 4 38 38 H 1.08999 * 109.47507 * 59.99685 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0354 2.8140 0.0000 6 6 5.4389 2.8213 -0.6090 7 6 5.9874 4.2496 -0.6090 8 6 6.0522 4.7711 0.8279 9 8 6.9115 3.9309 1.6011 10 6 7.5749 4.5090 2.6240 11 1 7.4402 5.5608 2.8293 12 6 8.4247 3.7515 3.4153 13 7 8.5840 2.4688 3.1690 14 14 9.3437 4.5520 4.8310 15 1 8.5224 4.4670 6.0653 16 1 10.6334 3.8479 5.0451 17 1 9.6057 5.9776 4.5080 18 6 4.6487 4.7638 1.4368 19 6 4.1002 3.3360 1.4367 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6767 1.9563 -0.8901 27 1 3.8703 0.9166 0.7822 28 1 3.3800 3.4545 -0.5900 29 1 5.3928 2.4493 -1.6325 30 1 6.0944 2.1808 -0.0189 31 1 5.3321 4.8904 -1.1989 32 1 6.9872 4.2549 -1.0434 33 1 6.4434 5.7885 0.8278 34 1 9.1789 1.9390 3.7224 35 1 4.6951 5.1349 2.4607 36 1 3.9934 5.4046 0.8470 37 1 3.1002 3.3308 1.8707 38 1 4.7556 2.6954 2.0269 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164135718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = -83.850933 kcal Electronic energy + Delta-G solvation = -16385.466706 eV Core-core repulsion = 13840.261450 eV Total energy + Delta-G solvation = -2545.205256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23073 -37.91761 -35.96330 -33.90644 -32.83173 -31.60546 -29.22445 -26.64940 -25.55084 -23.53094 -22.41369 -22.19257 -20.62212 -19.43143 -17.31687 -16.74115 -16.41513 -15.95266 -15.82869 -15.50194 -15.19592 -14.47047 -14.25682 -13.80596 -13.69167 -13.45242 -13.11533 -12.98479 -12.93170 -12.86221 -12.54136 -12.22196 -12.12779 -11.93750 -11.83348 -11.66502 -11.59900 -11.14480 -10.92377 -10.86114 -10.04025 -9.25741 -8.12417 -5.78714 1.38538 1.44043 1.53022 2.34764 3.19477 3.20904 3.80302 3.90334 3.95165 4.08585 4.21149 4.25235 4.36632 4.44084 4.51492 4.55937 4.66793 4.72055 4.72833 4.80291 4.92945 4.94312 5.00337 5.09829 5.16092 5.20829 5.27493 5.31251 5.37741 5.38642 5.44130 5.55957 5.64932 6.21598 6.26619 6.43679 7.31536 8.17219 9.12176 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035473 B = 0.005964 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.132484 B = 4693.962264 C = 5009.528379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.059 3.941 4 N -0.694 5.694 5 C 0.104 3.896 6 C -0.093 4.093 7 C -0.104 4.104 8 C 0.079 3.921 9 O -0.314 6.314 10 C -0.367 4.367 11 H 0.065 0.935 12 C -0.042 4.042 13 N -0.938 5.938 14 Si 0.996 3.004 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.261 1.261 18 C -0.125 4.125 19 C -0.128 4.128 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.026 0.974 26 H 0.077 0.923 27 H 0.336 0.664 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.257 0.743 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.985 0.544 -6.485 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.323 5.323 5 C -0.005 4.005 6 C -0.131 4.131 7 C -0.142 4.142 8 C 0.020 3.980 9 O -0.230 6.230 10 C -0.447 4.447 11 H 0.083 0.917 12 C -0.234 4.234 13 N -0.583 5.583 14 Si 0.819 3.181 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.185 1.185 18 C -0.163 4.163 19 C -0.167 4.167 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.153 0.847 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.855 0.149 -7.181 15.606 hybrid contribution 0.627 0.656 1.922 2.125 sum -13.228 0.805 -5.259 14.257 Atomic orbital electron populations 1.21699 0.94242 1.02314 1.02109 1.21489 0.96618 0.95660 1.02121 1.22082 0.86820 0.97660 1.00451 1.60659 1.08156 1.13603 1.49895 1.21433 0.95808 0.89133 0.94171 1.21257 0.95344 0.96197 1.00299 1.21567 1.01054 0.97263 0.94354 1.22142 0.90519 0.93101 0.92219 1.85653 1.58289 1.35708 1.43335 1.21318 1.22208 0.93736 1.07397 0.91719 1.26048 0.99502 0.96183 1.01709 1.70193 1.39637 1.07275 1.41202 0.84889 0.77484 0.78053 0.77670 1.19942 1.20589 1.18530 1.21874 0.97012 0.97071 1.00387 1.21943 0.99203 0.97162 0.98374 0.92781 0.92002 0.91807 0.91546 0.92797 0.95606 0.90501 0.84663 0.89209 0.90965 0.95015 0.88504 0.92991 0.94954 0.93430 0.94157 0.89463 0.92018 0.94859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -2.45 6.19 30.59 0.19 -2.26 16 3 C 0.06 1.37 5.48 86.30 0.47 1.84 16 4 N -0.69 -20.41 6.25 -491.58 -3.07 -23.48 16 5 C 0.10 3.29 2.47 44.91 0.11 3.40 16 6 C -0.09 -3.36 5.38 30.59 0.16 -3.20 16 7 C -0.10 -3.76 5.66 30.59 0.17 -3.58 16 8 C 0.08 3.41 2.96 30.59 0.09 3.50 16 9 O -0.31 -17.97 8.08 -81.98 -0.66 -18.64 16 10 C -0.37 -21.82 9.77 67.91 0.66 -21.15 16 11 H 0.07 3.63 7.65 -2.91 -0.02 3.61 16 12 C -0.04 -2.48 5.49 84.83 0.47 -2.02 16 13 N -0.94 -60.38 13.67 21.61 0.30 -60.08 16 14 Si 1.00 46.00 29.55 68.60 2.03 48.03 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 18 C -0.12 -4.64 5.63 30.58 0.17 -4.47 16 19 C -0.13 -4.62 5.02 30.58 0.15 -4.47 16 20 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.03 0.61 7.44 -2.39 -0.02 0.59 16 26 H 0.08 1.64 8.06 -2.38 -0.02 1.62 16 27 H 0.34 10.78 8.47 -89.70 -0.76 10.02 16 28 H 0.09 2.43 7.80 -2.39 -0.02 2.41 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 31 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.03 1.40 7.80 -2.39 -0.02 1.38 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.06 1.96 7.45 -2.38 -0.02 1.94 16 38 H 0.03 1.52 7.67 -2.39 -0.02 1.50 16 Total: -1.00 -68.98 302.60 2.21 -66.77 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.25 Total: 21.41 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 3.37 Total: -34.01 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -2.78 Total: -83.56 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.66 Total: -18.64 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -68.98 2.21 -66.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164135718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.077 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds